6jxp - Revision history

OCA at 10:04, 6 September 2023

OCA — Wed, 06 Sep 2023 10:04:45 GMT

←Older revision		Revision as of 10:04, 6 September 2023
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	<StructureSection load='6jxp' size='340' side='right'caption='[[6jxp]], [[Resolution\|resolution]] 1.56Å' scene=''>		<StructureSection load='6jxp' size='340' side='right'caption='[[6jxp]], [[Resolution\|resolution]] 1.56Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[6jxp]] is a 1 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/Gallus_gallus Gallus gallus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6JXP OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://proteopedia.org/fgij/fg.htm?mol=6JXP FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[6jxp]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Gallus_gallus Gallus gallus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6JXP OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=6JXP FirstGlance]. <br>
-	</td></tr><tr id='~~ligand~~'><td class="sblockLbl"><b>[[~~Ligand~~\|~~Ligands~~:]]</b></td><td class="sblockDat" id="~~ligandDat~~">~~<scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>~~</td></tr>	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 1.56Å</td></tr>
-	<tr id='~~activity~~'><td class="sblockLbl"><b>~~Activity~~:</b></td><td class="sblockDat"><~~span class~~='~~plainlinks~~'>~~[http://en.wikipedia.org/wiki/Lysozyme Lysozyme], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.2.1.17 3.2.1.17]~~ </~~span~~></td></tr>	+	<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://proteopedia.org/fgij/fg.htm?mol=6jxp FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6jxp OCA], [~~http~~://pdbe.org/6jxp PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=6jxp RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/6jxp PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=6jxp ProSAT]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=6jxp FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6jxp OCA], [https://pdbe.org/6jxp PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=6jxp RCSB], [https://www.ebi.ac.uk/pdbsum/6jxp PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=6jxp ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
-	[~~[http~~://www.uniprot.org/uniprot/LYSC_CHICK LYSC_CHICK]] Lysozymes have primarily a bacteriolytic function; those in tissues and body fluids are associated with the monocyte-macrophage system and enhance the activity of immunoagents. Has bacteriolytic activity against M.luteus.<ref>PMID:22044478</ref>	+	[https://www.uniprot.org/uniprot/LYSC_CHICK LYSC_CHICK] Lysozymes have primarily a bacteriolytic function; those in tissues and body fluids are associated with the monocyte-macrophage system and enhance the activity of immunoagents. Has bacteriolytic activity against M.luteus.<ref>PMID:22044478</ref>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
	== Publication Abstract from PubMed ==		== Publication Abstract from PubMed ==
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	[[Category: Gallus gallus]]		[[Category: Gallus gallus]]
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	~~[[Category: Lysozyme]]~~	+	[[Category: Nam KH]]
-	[[Category: Nam~~, K H]]~~	+
-	~~[[Category: Hydrolase]]~~	+
-	~~[[Category: Lcp]]~~	+
-	~~[[Category: Serial crystallography~~]]	+

OCA at 11:21, 29 July 2020

OCA — Wed, 29 Jul 2020 11:21:11 GMT

←Older revision		Revision as of 11:21, 29 July 2020
Line 3:		Line 3:
	<StructureSection load='6jxp' size='340' side='right'caption='[[6jxp]], [[Resolution\|resolution]] 1.56Å' scene=''>		<StructureSection load='6jxp' size='340' side='right'caption='[[6jxp]], [[Resolution\|resolution]] 1.56Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[6jxp]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Gallus_gallus Gallus gallus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6JXP OCA]. For a <b>guided tour on the structure components</b> use [http://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=6JXP FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[6jxp]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Gallus_gallus Gallus gallus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6JXP OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=6JXP FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene></td></tr>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene></td></tr>
	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Lysozyme Lysozyme], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.2.1.17 3.2.1.17] </span></td></tr>		<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Lysozyme Lysozyme], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.2.1.17 3.2.1.17] </span></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=6jxp FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6jxp OCA], [http://pdbe.org/6jxp PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6jxp RCSB], [http://www.ebi.ac.uk/pdbsum/6jxp PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6jxp ProSAT]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=6jxp FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6jxp OCA], [http://pdbe.org/6jxp PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6jxp RCSB], [http://www.ebi.ac.uk/pdbsum/6jxp PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6jxp ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
	[[http://www.uniprot.org/uniprot/LYSC_CHICK LYSC_CHICK]] Lysozymes have primarily a bacteriolytic function; those in tissues and body fluids are associated with the monocyte-macrophage system and enhance the activity of immunoagents. Has bacteriolytic activity against M.luteus.<ref>PMID:22044478</ref>		[[http://www.uniprot.org/uniprot/LYSC_CHICK LYSC_CHICK]] Lysozymes have primarily a bacteriolytic function; those in tissues and body fluids are associated with the monocyte-macrophage system and enhance the activity of immunoagents. Has bacteriolytic activity against M.luteus.<ref>PMID:22044478</ref>
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	Sample delivery using injectors is widely used in serial crystallography (SX) and has significantly contributed to the determination of crystal structures at room temperature. However, sophisticated injector nozzle fabrication methods and sample delivery operations have made it difficult for ordinary users to access the SX research. Herein, a simple and easily accessible sample delivery method for SX experiments is introduced, that uses a viscous medium, commercially available syringe and syringe pump. The syringe containing the lysozyme crystals embedded in lipidic cubic phase (LCP) or polyacrylamide (PAM) delivery media was connected to a needle having an inner diameter of 168 microm, after which it was installed on a syringe pump. By driving the syringe pump, the syringe plunger was pushed and the crystal sample was delivered to the X-ray beam position in a stable manner. Using this system, the room-temperature crystal structures of lysozyme embedded in LCP and PAM at 1.56 A and 1.75 A, respectively, were determined. This straightforward syringe pump-based sample delivery system can be utilized in SX.
		+
		+	Sample delivery using viscous media, a syringe and a syringe pump for serial crystallography.,Park SY, Nam KH J Synchrotron Radiat. 2019 Sep 1;26(Pt 5):1815-1819. doi:, 10.1107/S160057751900897X. Epub 2019 Aug 15. PMID:31490174<ref>PMID:31490174</ref>
		+
		+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
		+	</div>
		+	<div class="pdbe-citations 6jxp" style="background-color:#fffaf0;"></div>
		+
		+	==See Also==
		+	*[[Lysozyme 3D structures\|Lysozyme 3D structures]]
	== References ==		== References ==
	<references/>		<references/>

OCA at 07:31, 21 May 2019

OCA — Tue, 21 May 2019 07:31:14 GMT

←Older revision		Revision as of 07:31, 21 May 2019
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-	'''Unreleased structure'''

-	~~The entry 6jxp is ON HOLD~~	+	==Room temperature structure of lysozyme delivered in LCP by serial millisecond crystallography==
-		+	<StructureSection load='6jxp' size='340' side='right'caption='[[6jxp]], [[Resolution\|resolution]] 1.56Å' scene=''>
-	~~Authors: Nam, K.H.~~	+	== Structural highlights ==
-		+	<table><tr><td colspan='2'>[[6jxp]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Gallus_gallus Gallus gallus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6JXP OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6JXP FirstGlance]. <br>
-	~~Description:~~ Room temperature structure of lysozyme delivered in LCP by serial millisecond crystallography	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene></td></tr>
-	[[Category: ~~Unreleased~~ Structures]]	+	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Lysozyme Lysozyme], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.2.1.17 3.2.1.17] </span></td></tr>
-	[[Category: Nam, K.H]]	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6jxp FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6jxp OCA], [http://pdbe.org/6jxp PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6jxp RCSB], [http://www.ebi.ac.uk/pdbsum/6jxp PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6jxp ProSAT]</span></td></tr>
		+	</table>
		+	== Function ==
		+	[[http://www.uniprot.org/uniprot/LYSC_CHICK LYSC_CHICK]] Lysozymes have primarily a bacteriolytic function; those in tissues and body fluids are associated with the monocyte-macrophage system and enhance the activity of immunoagents. Has bacteriolytic activity against M.luteus.<ref>PMID:22044478</ref>
		+	== References ==
		+	<references/>
		+	__TOC__
		+	</StructureSection>
		+	[[Category: Gallus gallus]]
		+	[[Category: Large Structures]]
		+	[[Category: Lysozyme]]
		+	[[Category: Nam, K H]]
		+	[[Category: Hydrolase]]
		+	[[Category: Lcp]]
		+	[[Category: Serial crystallography]]

OCA: Protected "6jxp" [edit=sysop:move=sysop]

OCA — Wed, 01 May 2019 07:00:35 GMT

Protected "6jxp" [edit=sysop:move=sysop]

←Older revision

Revision as of 07:00, 1 May 2019

OCA: New page: '''Unreleased structure''' The entry 6jxp is ON HOLD Authors: Nam, K.H. Description: Room temperature structure of lysozyme delivered in LCP by serial millisecond crystallography [[Cat...

OCA — Wed, 01 May 2019 07:00:34 GMT

New page: '''Unreleased structure''' The entry 6jxp is ON HOLD Authors: Nam, K.H. Description: Room temperature structure of lysozyme delivered in LCP by serial millisecond crystallography [[Cat...

New page

'''Unreleased structure'''

The entry 6jxp is ON HOLD

Authors: Nam, K.H.

Description: Room temperature structure of lysozyme delivered in LCP by serial millisecond crystallography
[[Category: Unreleased Structures]]
[[Category: Nam, K.H]]