6jy8 - Revision history

OCA at 10:21, 22 November 2023

OCA — Wed, 22 Nov 2023 10:21:47 GMT

←Older revision		Revision as of 10:21, 22 November 2023
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	<StructureSection load='6jy8' size='340' side='right'caption='[[6jy8]], [[Resolution\|resolution]] 1.90Å' scene=''>		<StructureSection load='6jy8' size='340' side='right'caption='[[6jy8]], [[Resolution\|resolution]] 1.90Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[6jy8]] is a 1 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6JY8 OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=6JY8 FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[6jy8]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Nonlabens_marinus_S1-08 Nonlabens marinus S1-08]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6JY8 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=6JY8 FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=OLA:OLEIC+ACID'>OLA</scene>, <scene name='pdbligand=RET:RETINAL'>RET</scene></td></tr>	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 1.9Å</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=6jy8 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6jy8 OCA], [~~http~~://pdbe.org/6jy8 PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=6jy8 RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/6jy8 PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=6jy8 ProSAT]</span></td></tr>	+	<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=OLA:OLEIC+ACID'>OLA</scene>, <scene name='pdbligand=RET:RETINAL'>RET</scene></td></tr>
		+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=6jy8 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6jy8 OCA], [https://pdbe.org/6jy8 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=6jy8 RCSB], [https://www.ebi.ac.uk/pdbsum/6jy8 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=6jy8 ProSAT]</span></td></tr>
	</table>		</table>
		+	== Function ==
		+	[https://www.uniprot.org/uniprot/W8VZW3_9FLAO W8VZW3_9FLAO]
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
	== Publication Abstract from PubMed ==		== Publication Abstract from PubMed ==
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	</div>		</div>
	<div class="pdbe-citations 6jy8" style="background-color:#fffaf0;"></div>		<div class="pdbe-citations 6jy8" style="background-color:#fffaf0;"></div>
		+
		+	==See Also==
		+	*[[Rhodopsin 3D structures\|Rhodopsin 3D structures]]
	== References ==		== References ==
	<references/>		<references/>
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	</StructureSection>		</StructureSection>
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: ~~Lee, W~~]]	+	[[Category: Nonlabens marinus S1-08]]
-	[[Category: ~~Ohki, M~~]]	+	[[Category: Lee W]]
-	[[Category: ~~Park, S Y~~]]	+	[[Category: Ohki M]]
-	[[Category: ~~Yun, J H~~]]	+	[[Category: Park SY]]
-	[[Category: ~~Chloride pump]]~~	+	[[Category: Yun JH]]
-	~~[[Category: Membrane protein]]~~	+
-	~~[[Category: Photo-excitation]]~~	+
-	~~[[Category: Retinal~~]]	+

OCA at 06:39, 4 March 2020

OCA — Wed, 04 Mar 2020 06:39:51 GMT

←Older revision		Revision as of 06:39, 4 March 2020
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-	'''Unreleased structure'''

-	~~The entry~~ 6jy8 is ~~ON HOLD until Paper~~ Publication	+	==Structure of dark-state marine bacterial chloride importer, NM-R3, with CW laser (ND-3%) at 95K.==
		+	<StructureSection load='6jy8' size='340' side='right'caption='[[6jy8]], [[Resolution\|resolution]] 1.90Å' scene=''>
		+	== Structural highlights ==
		+	<table><tr><td colspan='2'>[[6jy8]] is a 1 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6JY8 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6JY8 FirstGlance]. <br>
		+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=OLA:OLEIC+ACID'>OLA</scene>, <scene name='pdbligand=RET:RETINAL'>RET</scene></td></tr>
		+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6jy8 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6jy8 OCA], [http://pdbe.org/6jy8 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6jy8 RCSB], [http://www.ebi.ac.uk/pdbsum/6jy8 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6jy8 ProSAT]</span></td></tr>
		+	</table>
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	A newly identified microbial rhodopsin, NM-R3, from the marine flavobacterium Nonlabens marinus, was recently shown to drive chloride ion uptake, extending our understanding of the diversity of mechanisms for biological energy conversion. To clarify the mechanism underlying its function, we characterized the crystal structures of NM-R3 in both the dark state and early intermediate photoexcited states produced by laser pulses of different intensities and temperatures. The displacement of chloride ions at five different locations in the model reflected the detailed anion-conduction pathway, and the activity-related key residues-Cys(105), Ser(60), Gln(224), and Phe(90)-were identified by mutation assays and spectroscopy. Comparisons with other proteins, including a closely related outward sodium ion pump, revealed key motifs and provided structural insights into light-driven ion transport across membranes by the NQ subfamily of rhodopsins. Unexpectedly, the response of the retinal in NM-R3 to photostimulation appears to be substantially different from that seen in bacteriorhodopsin.

-	~~Authors~~:	+	Pumping mechanism of NM-R3, a light-driven bacterial chloride importer in the rhodopsin family.,Yun JH, Ohki M, Park JH, Ishimoto N, Sato-Tomita A, Lee W, Jin Z, Tame JRH, Shibayama N, Park SY, Lee W Sci Adv. 2020 Feb 7;6(6):eaay2042. doi: 10.1126/sciadv.aay2042. eCollection 2020 , Feb. PMID:32083178<ref>PMID:32083178</ref>

-	~~Description~~:	+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
-	[[Category: ~~Unreleased~~ Structures]]	+	</div>
		+	<div class="pdbe-citations 6jy8" style="background-color:#fffaf0;"></div>
		+	== References ==
		+	<references/>
		+	__TOC__
		+	</StructureSection>
		+	[[Category: Large Structures]]
		+	[[Category: Lee, W]]
		+	[[Category: Ohki, M]]
		+	[[Category: Park, S Y]]
		+	[[Category: Yun, J H]]
		+	[[Category: Chloride pump]]
		+	[[Category: Membrane protein]]
		+	[[Category: Photo-excitation]]
		+	[[Category: Retinal]]

OCA at 03:50, 12 June 2019

OCA — Wed, 12 Jun 2019 03:50:23 GMT

←Older revision		Revision as of 03:50, 12 June 2019
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	'''Unreleased structure'''		'''Unreleased structure'''

-	The entry 6jy8 is ON HOLD	+	The entry 6jy8 is ON HOLD until Paper Publication

	Authors:		Authors:

OCA: Protected "6jy8" [edit=sysop:move=sysop]

OCA — Wed, 01 May 2019 07:02:15 GMT

Protected "6jy8" [edit=sysop:move=sysop]

←Older revision

Revision as of 07:02, 1 May 2019

OCA: New page: '''Unreleased structure''' The entry 6jy8 is ON HOLD Authors: Description: Category: Unreleased Structures

OCA — Wed, 01 May 2019 07:02:13 GMT

New page: '''Unreleased structure''' The entry 6jy8 is ON HOLD Authors: Description: Category: Unreleased Structures

New page

'''Unreleased structure'''

The entry 6jy8 is ON HOLD

Authors:

Description:
[[Category: Unreleased Structures]]