6jzi - Revision history

OCA at 10:04, 6 September 2023

OCA — Wed, 06 Sep 2023 10:04:50 GMT

←Older revision		Revision as of 10:04, 6 September 2023
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	<StructureSection load='6jzi' size='340' side='right'caption='[[6jzi]], [[Resolution\|resolution]] 2.00Å' scene=''>		<StructureSection load='6jzi' size='340' side='right'caption='[[6jzi]], [[Resolution\|resolution]] 2.00Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[6jzi]] is a 1 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/Gallus_gallus Gallus gallus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6JZI OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=6JZI FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[6jzi]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Gallus_gallus Gallus gallus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6JZI OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=6JZI FirstGlance]. <br>
-	</td></tr><tr id='~~ligand~~'><td class="sblockLbl"><b>[[~~Ligand~~\|~~Ligands~~:]]</b></td><td class="sblockDat"~~><scene name~~=~~'pdbligand=CL:CHLORIDE+ION'>CL</scene~~>, ~~<scene name='pdbligand=NA:SODIUM+ION'>NA</scene>~~</td></tr>	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 2Å</td></tr>
-	<tr id='~~activity~~'><td class="sblockLbl"><b>~~Activity~~:</b></td><td class="sblockDat"><~~span class~~='~~plainlinks~~'>~~[http:~~/~~/en.wikipedia.org/wiki/Lysozyme Lysozyme]~~, ~~with EC number [http~~:~~//www.brenda-enzymes.info/php/result_flat.php4?ecno=3.2.1.17 3.2.1.17]~~ </~~span~~></td></tr>	+	<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=6jzi FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6jzi OCA], [~~http~~://pdbe.org/6jzi PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=6jzi RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/6jzi PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=6jzi ProSAT]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=6jzi FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6jzi OCA], [https://pdbe.org/6jzi PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=6jzi RCSB], [https://www.ebi.ac.uk/pdbsum/6jzi PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=6jzi ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
-	[~~[http~~://www.uniprot.org/uniprot/LYSC_CHICK LYSC_CHICK]] Lysozymes have primarily a bacteriolytic function; those in tissues and body fluids are associated with the monocyte-macrophage system and enhance the activity of immunoagents. Has bacteriolytic activity against M.luteus.<ref>PMID:22044478</ref>	+	[https://www.uniprot.org/uniprot/LYSC_CHICK LYSC_CHICK] Lysozymes have primarily a bacteriolytic function; those in tissues and body fluids are associated with the monocyte-macrophage system and enhance the activity of immunoagents. Has bacteriolytic activity against M.luteus.<ref>PMID:22044478</ref>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
	== Publication Abstract from PubMed ==		== Publication Abstract from PubMed ==
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	</div>		</div>
	<div class="pdbe-citations 6jzi" style="background-color:#fffaf0;"></div>		<div class="pdbe-citations 6jzi" style="background-color:#fffaf0;"></div>
		+
		+	==See Also==
		+	*[[Lysozyme 3D structures\|Lysozyme 3D structures]]
	== References ==		== References ==
	<references/>		<references/>
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	[[Category: Gallus gallus]]		[[Category: Gallus gallus]]
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	~~[[Category: Lysozyme]]~~	+	[[Category: Iwata S]]
-	[[Category: Iwata, S]]	+	[[Category: Nakane T]]
-	[[Category: Nakane, T]]	+	[[Category: Nango E]]
-	[[Category: Nango, E]]	+	[[Category: Sugahara M]]
-	[[Category: Sugahara, M]]	+	[[Category: Tanaka T]]
-	[[Category: Tanaka, T]]	+
-	~~[[Category: Hydrolase]]~~	+
-	~~[[Category: X-ray free-electron lasers room-temperatur~~]]	+

OCA at 10:48, 18 December 2019

OCA — Wed, 18 Dec 2019 10:48:06 GMT

←Older revision		Revision as of 10:48, 18 December 2019
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	== Function ==		== Function ==
	[[http://www.uniprot.org/uniprot/LYSC_CHICK LYSC_CHICK]] Lysozymes have primarily a bacteriolytic function; those in tissues and body fluids are associated with the monocyte-macrophage system and enhance the activity of immunoagents. Has bacteriolytic activity against M.luteus.<ref>PMID:22044478</ref>		[[http://www.uniprot.org/uniprot/LYSC_CHICK LYSC_CHICK]] Lysozymes have primarily a bacteriolytic function; those in tissues and body fluids are associated with the monocyte-macrophage system and enhance the activity of immunoagents. Has bacteriolytic activity against M.luteus.<ref>PMID:22044478</ref>
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	A sample-injection device has been developed at SPring-8 Angstrom Compact Free-Electron Laser (SACLA) for serial femtosecond crystallography (SFX) at atmospheric pressure. Microcrystals embedded in a highly viscous carrier are stably delivered from a capillary nozzle with the aid of a coaxial gas flow and a suction device. The cartridge-type sample reservoir is easily replaceable and facilitates sample reloading or exchange. The reservoir is positioned in a cooling jacket with a temperature-regulated water flow, which is useful to prevent drastic changes in the sample temperature during data collection. This work demonstrates that the injector successfully worked in SFX of the human A2A adenosine receptor complexed with an antagonist, ZM241385, in lipidic cubic phase and for hen egg-white lysozyme microcrystals in a grease carrier. The injection device has also been applied to many kinds of proteins, not only for static structural analyses but also for dynamics studies using pump-probe techniques.
		+
		+	High-viscosity sample-injection device for serial femtosecond crystallography at atmospheric pressure.,Shimazu Y, Tono K, Tanaka T, Yamanaka Y, Nakane T, Mori C, Terakado Kimura K, Fujiwara T, Sugahara M, Tanaka R, Doak RB, Shimamura T, Iwata S, Nango E, Yabashi M J Appl Crystallogr. 2019 Oct 17;52(Pt 6):1280-1288. doi:, 10.1107/S1600576719012846. eCollection 2019 Dec 1. PMID:31798359<ref>PMID:31798359</ref>
		+
		+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
		+	</div>
		+	<div class="pdbe-citations 6jzi" style="background-color:#fffaf0;"></div>
	== References ==		== References ==
	<references/>		<references/>

OCA at 09:03, 30 October 2019

OCA — Wed, 30 Oct 2019 09:03:39 GMT

←Older revision		Revision as of 09:03, 30 October 2019
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-	'''Unreleased structure'''

-	~~The entry~~ 6jzi is ~~ON HOLD until Paper Publication~~	+	==Structure of hen egg-white lysozyme obtained from SFX experiments under atmospheric pressure==
-		+	<StructureSection load='6jzi' size='340' side='right'caption='[[6jzi]], [[Resolution\|resolution]] 2.00Å' scene=''>
-	~~Authors~~:	+	== Structural highlights ==
-		+	<table><tr><td colspan='2'>[[6jzi]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Gallus_gallus Gallus gallus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6JZI OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6JZI FirstGlance]. <br>
-	~~Description~~:	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene></td></tr>
-	[[Category: ~~Unreleased~~ Structures]]	+	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Lysozyme Lysozyme], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.2.1.17 3.2.1.17] </span></td></tr>
		+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6jzi FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6jzi OCA], [http://pdbe.org/6jzi PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6jzi RCSB], [http://www.ebi.ac.uk/pdbsum/6jzi PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6jzi ProSAT]</span></td></tr>
		+	</table>
		+	== Function ==
		+	[[http://www.uniprot.org/uniprot/LYSC_CHICK LYSC_CHICK]] Lysozymes have primarily a bacteriolytic function; those in tissues and body fluids are associated with the monocyte-macrophage system and enhance the activity of immunoagents. Has bacteriolytic activity against M.luteus.<ref>PMID:22044478</ref>
		+	== References ==
		+	<references/>
		+	__TOC__
		+	</StructureSection>
		+	[[Category: Gallus gallus]]
		+	[[Category: Large Structures]]
		+	[[Category: Lysozyme]]
		+	[[Category: Iwata, S]]
		+	[[Category: Nakane, T]]
		+	[[Category: Nango, E]]
		+	[[Category: Sugahara, M]]
		+	[[Category: Tanaka, T]]
		+	[[Category: Hydrolase]]
		+	[[Category: X-ray free-electron lasers room-temperatur]]

OCA at 04:10, 24 July 2019

OCA — Wed, 24 Jul 2019 04:10:40 GMT

←Older revision		Revision as of 04:10, 24 July 2019
Line 1:		Line 1:
	'''Unreleased structure'''		'''Unreleased structure'''

-	The entry 6jzi is ON HOLD	+	The entry 6jzi is ON HOLD until Paper Publication

	Authors:		Authors:

OCA: Protected "6jzi" [edit=sysop:move=sysop]

OCA — Fri, 10 May 2019 07:40:40 GMT

Protected "6jzi" [edit=sysop:move=sysop]

←Older revision

Revision as of 07:40, 10 May 2019

OCA: New page: '''Unreleased structure''' The entry 6jzi is ON HOLD Authors: Description: Category: Unreleased Structures

OCA — Fri, 10 May 2019 07:40:37 GMT

New page: '''Unreleased structure''' The entry 6jzi is ON HOLD Authors: Description: Category: Unreleased Structures

New page

'''Unreleased structure'''

The entry 6jzi is ON HOLD

Authors:

Description:
[[Category: Unreleased Structures]]