6jzt - Revision history

OCA at 10:40, 27 March 2024

OCA — Wed, 27 Mar 2024 10:40:36 GMT

←Older revision		Revision as of 10:40, 27 March 2024
Line 3:		Line 3:
	<SX load='6jzt' size='340' side='right' viewer='molstar' caption='[[6jzt]], [[Resolution\|resolution]] 7.10Å' scene=''>		<SX load='6jzt' size='340' side='right' viewer='molstar' caption='[[6jzt]], [[Resolution\|resolution]] 7.10Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[6jzt]] is a 22 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/~~Salmonella_typhimurium~~ Salmonella ~~typhimurium~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6JZT OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://proteopedia.org/fgij/fg.htm?mol=6JZT FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[6jzt]] is a 22 chain structure with sequence from [https://en.wikipedia.org/wiki/Salmonella_enterica_subsp._enterica_serovar_Typhimurium Salmonella enterica subsp. enterica serovar Typhimurium]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6JZT OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=6JZT FirstGlance]. <br>
-	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://proteopedia.org/fgij/fg.htm?mol=6jzt FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6jzt OCA], [~~http~~://pdbe.org/6jzt PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=6jzt RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/6jzt PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=6jzt ProSAT]</span></td></tr>	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">Electron Microscopy, [[Resolution\|Resolution]] 7.1Å</td></tr>
		+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=6jzt FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6jzt OCA], [https://pdbe.org/6jzt PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=6jzt RCSB], [https://www.ebi.ac.uk/pdbsum/6jzt PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=6jzt ProSAT]</span></td></tr>
	</table>		</table>
-	~~<div style~~=~~"background-color:#fffaf0;">~~	+	== Function ==
-	=~~= Publication Abstract from PubMed~~ ==	+	[https://www.uniprot.org/uniprot/FLGE_SALTY FLGE_SALTY]
-	The bacterial flagellum is a large molecular complex composed of thousands of protein subunits for motility. The filamentous part of the flagellum, which is called the axial structure, consists of the filament, the hook, and the rods, with other minor components-the cap protein and the hook associated proteins. They share a common basic architecture of subunit arrangement, but each part shows quite distinct mechanical properties to achieve its specific function. The distal rod and the hook are helical assemblies of a single protein, FlgG and FlgE, respectively. They show a significant sequence similarity but have distinct mechanical characteristics. The rod is a rigid, straight cylinder, whereas the hook is a curved tube with high bending flexibility. Here, we report a structural model of the rod constructed by using the crystal structure of a core fragment of FlgG with a density map obtained previously by electron cryomicroscopy. Our structural model suggests that a segment called L-stretch plays a key role in achieving the distinct mechanical properties of the rod using a structurally similar component protein to that of the hook.	+

-	Architecture of the Bacterial Flagellar Distal Rod and Hook of Salmonella.,Saijo-Hamano Y, Matsunami H, Namba K, Imada K Biomolecules. 2019 Jul 7;9(7). pii: biom9070260. doi: 10.3390/biom9070260. PMID:31284631<ref>PMID:31284631</ref>	+	==See Also==
-		+	*[[Flagellar protein 3D structures\|Flagellar protein 3D structures]]
-	~~From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>~~	+
-	~~</div>~~	+
-	~~<div class~~=~~"pdbe-citations 6jzt" style~~=~~"background-color:#fffaf0;"></div>~~	+
-	~~== References~~ ==	+
-	~~<references/>~~	+
	__TOC__		__TOC__
	</SX>		</SX>
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: Salmonella ~~typhimurium~~]]	+	[[Category: Salmonella enterica subsp. enterica serovar Typhimurium]]
-	[[Category: Imada, K]]	+	[[Category: Imada K]]
-	[[Category: Matsunami, H]]	+	[[Category: Matsunami H]]
-	[[Category: Namba, K]]	+	[[Category: Namba K]]
-	[[Category: Saijo-Hamano, Y]]	+	[[Category: Saijo-Hamano Y]]
-	~~[[Category: Bacterial flagellum]]~~	+
-	~~[[Category: Hook protein]]~~	+
-	~~[[Category: Motor protein]]~~	+
-	~~[[Category: Structural protein~~]]	+

OCA at 02:17, 11 April 2020

OCA — Sat, 11 Apr 2020 02:17:47 GMT

←Older revision		Revision as of 02:17, 11 April 2020
Line 3:		Line 3:
	<SX load='6jzt' size='340' side='right' viewer='molstar' caption='[[6jzt]], [[Resolution\|resolution]] 7.10Å' scene=''>		<SX load='6jzt' size='340' side='right' viewer='molstar' caption='[[6jzt]], [[Resolution\|resolution]] 7.10Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[6jzt]] is a 22 chain structure with sequence from [http://en.wikipedia.org/wiki/Salmonella_typhimurium Salmonella typhimurium]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6JZT OCA]. For a <b>guided tour on the structure components</b> use [http://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=6JZT FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[6jzt]] is a 22 chain structure with sequence from [http://en.wikipedia.org/wiki/Salmonella_typhimurium Salmonella typhimurium]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6JZT OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=6JZT FirstGlance]. <br>
-	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=6jzt FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6jzt OCA], [http://pdbe.org/6jzt PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6jzt RCSB], [http://www.ebi.ac.uk/pdbsum/6jzt PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6jzt ProSAT]</span></td></tr>	+	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=6jzt FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6jzt OCA], [http://pdbe.org/6jzt PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6jzt RCSB], [http://www.ebi.ac.uk/pdbsum/6jzt PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6jzt ProSAT]</span></td></tr>
	</table>		</table>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">

OCA at 22:21, 6 March 2020

OCA — Fri, 06 Mar 2020 22:21:45 GMT

←Older revision		Revision as of 22:21, 6 March 2020
Line 1:		Line 1:

	==Structure of the bacterial flagellar hook from Salmonella typhimurium==		==Structure of the bacterial flagellar hook from Salmonella typhimurium==
-	<~~StructureSection~~ load='6jzt' size='340' side='right'caption='[[6jzt]], [[Resolution\|resolution]] 7.10Å' scene=''>	+	<SX load='6jzt' size='340' side='right' viewer='molstar' caption='[[6jzt]], [[Resolution\|resolution]] 7.10Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[6jzt]] is a 22 chain structure with sequence from [http://en.wikipedia.org/wiki/Salmonella_typhimurium Salmonella typhimurium]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6JZT OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6JZT FirstGlance]. <br>		<table><tr><td colspan='2'>[[6jzt]] is a 22 chain structure with sequence from [http://en.wikipedia.org/wiki/Salmonella_typhimurium Salmonella typhimurium]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6JZT OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6JZT FirstGlance]. <br>
Line 18:		Line 18:
	<references/>		<references/>
	__TOC__		__TOC__
-	</~~StructureSection~~>	+	</SX>
	[[Category: Large Structures]]		[[Category: Large Structures]]
	[[Category: Salmonella typhimurium]]		[[Category: Salmonella typhimurium]]

OCA at 08:37, 24 July 2019

OCA — Wed, 24 Jul 2019 08:37:52 GMT

←Older revision		Revision as of 08:37, 24 July 2019
Line 6:		Line 6:
	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6jzt FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6jzt OCA], [http://pdbe.org/6jzt PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6jzt RCSB], [http://www.ebi.ac.uk/pdbsum/6jzt PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6jzt ProSAT]</span></td></tr>		</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6jzt FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6jzt OCA], [http://pdbe.org/6jzt PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6jzt RCSB], [http://www.ebi.ac.uk/pdbsum/6jzt PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6jzt ProSAT]</span></td></tr>
	</table>		</table>
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	The bacterial flagellum is a large molecular complex composed of thousands of protein subunits for motility. The filamentous part of the flagellum, which is called the axial structure, consists of the filament, the hook, and the rods, with other minor components-the cap protein and the hook associated proteins. They share a common basic architecture of subunit arrangement, but each part shows quite distinct mechanical properties to achieve its specific function. The distal rod and the hook are helical assemblies of a single protein, FlgG and FlgE, respectively. They show a significant sequence similarity but have distinct mechanical characteristics. The rod is a rigid, straight cylinder, whereas the hook is a curved tube with high bending flexibility. Here, we report a structural model of the rod constructed by using the crystal structure of a core fragment of FlgG with a density map obtained previously by electron cryomicroscopy. Our structural model suggests that a segment called L-stretch plays a key role in achieving the distinct mechanical properties of the rod using a structurally similar component protein to that of the hook.
		+
		+	Architecture of the Bacterial Flagellar Distal Rod and Hook of Salmonella.,Saijo-Hamano Y, Matsunami H, Namba K, Imada K Biomolecules. 2019 Jul 7;9(7). pii: biom9070260. doi: 10.3390/biom9070260. PMID:31284631<ref>PMID:31284631</ref>
		+
		+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
		+	</div>
		+	<div class="pdbe-citations 6jzt" style="background-color:#fffaf0;"></div>
		+	== References ==
		+	<references/>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>

OCA at 10:43, 17 July 2019

OCA — Wed, 17 Jul 2019 10:43:31 GMT

←Older revision		Revision as of 10:43, 17 July 2019
Line 1:		Line 1:
-	'''Unreleased structure'''

-	~~The entry~~ 6jzt ~~is ON HOLD~~	+	==Structure of the bacterial flagellar hook from Salmonella typhimurium==
-		+	<StructureSection load='6jzt' size='340' side='right'caption='[[6jzt]], [[Resolution\|resolution]] 7.10Å' scene=''>
-	~~Authors~~: ~~Saijo~~-~~Hamano~~, Y., ~~Matsunami~~, H., ~~Namba, K~~., ~~Imada, K~~.	+	== Structural highlights ==
-		+	<table><tr><td colspan='2'>[[6jzt]] is a 22 chain structure with sequence from [http://en.wikipedia.org/wiki/Salmonella_typhimurium Salmonella typhimurium]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6JZT OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6JZT FirstGlance]. <br>
-	~~Description: Structure of the bacterial flagellar hook from Salmonella typhimurium~~	+	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6jzt FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6jzt OCA], [http://pdbe.org/6jzt PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6jzt RCSB], [http://www.ebi.ac.uk/pdbsum/6jzt PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6jzt ProSAT]</span></td></tr>
-	[[Category: ~~Unreleased~~ Structures]]	+	</table>
-	[[Category: ~~Saijo-Hamano~~, Y]]	+	__TOC__
		+	</StructureSection>
		+	[[Category: Large Structures]]
		+	[[Category: Salmonella typhimurium]]
		+	[[Category: Imada, K]]
	[[Category: Matsunami, H]]		[[Category: Matsunami, H]]
	[[Category: Namba, K]]		[[Category: Namba, K]]
-	[[Category: ~~Imada~~, K]]	+	[[Category: Saijo-Hamano, Y]]
		+	[[Category: Bacterial flagellum]]
		+	[[Category: Hook protein]]
		+	[[Category: Motor protein]]
		+	[[Category: Structural protein]]

OCA: Protected "6jzt" [edit=sysop:move=sysop]

OCA — Fri, 10 May 2019 07:42:36 GMT

Protected "6jzt" [edit=sysop:move=sysop]

←Older revision

Revision as of 07:42, 10 May 2019

OCA: New page: '''Unreleased structure''' The entry 6jzt is ON HOLD Authors: Saijo-Hamano, Y., Matsunami, H., Namba, K., Imada, K. Description: Structure of the bacterial flagellar hook from Salmonel...

OCA — Fri, 10 May 2019 07:42:33 GMT

New page: '''Unreleased structure''' The entry 6jzt is ON HOLD Authors: Saijo-Hamano, Y., Matsunami, H., Namba, K., Imada, K. Description: Structure of the bacterial flagellar hook from Salmonel...

New page

'''Unreleased structure'''

The entry 6jzt is ON HOLD

Authors: Saijo-Hamano, Y., Matsunami, H., Namba, K., Imada, K.

Description: Structure of the bacterial flagellar hook from Salmonella typhimurium
[[Category: Unreleased Structures]]
[[Category: Saijo-Hamano, Y]]
[[Category: Matsunami, H]]
[[Category: Namba, K]]
[[Category: Imada, K]]