OCA at 16:08, 29 January 2020

OCA — Wed, 29 Jan 2020 16:08:58 GMT

←Older revision		Revision as of 16:08, 29 January 2020
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-	'''Unreleased structure'''

-	The entry ~~6kam~~ is ~~ON HOLD~~ ~~until Paper~~ Publication	+	==Crystal structure of FKRP in complex with Ba ion, CDP-ribtol, and sugar acceptor==
		+	<StructureSection load='6kam' size='340' side='right'caption='[[6kam]], [[Resolution\|resolution]] 2.46Å' scene=''>
		+	== Structural highlights ==
		+	<table><tr><td colspan='2'>[[6kam]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Human Human]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6KAM OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6KAM FirstGlance]. <br>
		+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=BA:BARIUM+ION'>BA</scene>, <scene name='pdbligand=CDP:CYTIDINE-5-DIPHOSPHATE'>CDP</scene>, <scene name='pdbligand=MAN:ALPHA-D-MANNOSE'>MAN</scene>, <scene name='pdbligand=NAG:N-ACETYL-D-GLUCOSAMINE'>NAG</scene>, <scene name='pdbligand=NGA:N-ACETYL-D-GALACTOSAMINE'>NGA</scene>, <scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene>, <scene name='pdbligand=RB0:D-RIBITOL'>RB0</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
		+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">FKRP ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=9606 HUMAN])</td></tr>
		+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6kam FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6kam OCA], [http://pdbe.org/6kam PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6kam RCSB], [http://www.ebi.ac.uk/pdbsum/6kam PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6kam ProSAT]</span></td></tr>
		+	</table>
		+	== Disease ==
		+	[[http://www.uniprot.org/uniprot/FKRP_HUMAN FKRP_HUMAN]] Congenital muscular dystrophy with intellectual disability;Walker-Warburg syndrome;Autosomal recessive limb-girdle muscular dystrophy type 2I;Congenital muscular dystrophy with cerebellar involvement;Muscle-eye-brain disease;Congenital muscular dystrophy without intellectual disability. The disease is caused by mutations affecting the gene represented in this entry. The disease is caused by mutations affecting the gene represented in this entry. The disease is caused by mutations affecting the gene represented in this entry.
		+	== Function ==
		+	[[http://www.uniprot.org/uniprot/FKRP_HUMAN FKRP_HUMAN]] Catalyzes the transfer of CDP-ribitol to ribitol 5-phosphate previously attached by FKTN/fukutin of to the phosphorylated O-mannosyl trisaccharide (N-acetylgalactosamine-beta-3-N-acetylglucosamine-beta-4-(phosphate-6-)mannose), a carbohydrate structure present in alpha-dystroglycan (DAG1) (PubMed:25279699, PubMed:26923585, PubMed:29477842). This constitutes the second step in the formation of the ribose 5-phosphate tandem repeat which links the phosphorylated O-mannosyl trisaccharide to the ligand binding moiety composed of repeats of 3-xylosyl-alpha-1,3-glucuronic acid-beta-1 (PubMed:25279699, PubMed:26923585, PubMed:29477842).<ref>PMID:25279699</ref> <ref>PMID:26923585</ref> <ref>PMID:29477842</ref>
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	alpha-Dystroglycan (alpha-DG) is a highly-glycosylated surface membrane protein. Defects in the O-mannosyl glycan of alpha-DG cause dystroglycanopathy, a group of congenital muscular dystrophies. The core M3 O-mannosyl glycan contains tandem ribitol-phosphate (RboP), a characteristic feature first found in mammals. Fukutin and fukutin-related protein (FKRP), whose mutated genes underlie dystroglycanopathy, sequentially transfer RboP from cytidine diphosphate-ribitol (CDP-Rbo) to form a tandem RboP unit in the core M3 glycan. Here, we report a series of crystal structures of FKRP with and without donor (CDP-Rbo) and/or acceptor [RboP-(phospho-)core M3 peptide] substrates. FKRP has N-terminal stem and C-terminal catalytic domains, and forms a tetramer both in crystal and in solution. In the acceptor complex, the phosphate group of RboP is recognized by the catalytic domain of one subunit, and a phosphate group on O-mannose is recognized by the stem domain of another subunit. Structure-based functional studies confirmed that the dimeric structure is essential for FKRP enzymatic activity.

-	~~Authors~~:	+	Crystal structures of fukutin-related protein (FKRP), a ribitol-phosphate transferase related to muscular dystrophy.,Kuwabara N, Imae R, Manya H, Tanaka T, Mizuno M, Tsumoto H, Kanagawa M, Kobayashi K, Toda T, Senda T, Endo T, Kato R Nat Commun. 2020 Jan 16;11(1):303. doi: 10.1038/s41467-019-14220-z. PMID:31949166<ref>PMID:31949166</ref>

-	~~Description~~:	+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
-	[[Category: ~~Unreleased~~ Structures]]	+	</div>
		+	<div class="pdbe-citations 6kam" style="background-color:#fffaf0;"></div>
		+	== References ==
		+	<references/>
		+	__TOC__
		+	</StructureSection>
		+	[[Category: Human]]
		+	[[Category: Large Structures]]
		+	[[Category: Kuwabara, N]]
		+	[[Category: Glycosyltranferase]]
		+	[[Category: Phospho ribitoyl tranferase]]
		+	[[Category: Transferase]]

OCA at 06:31, 2 October 2019

OCA — Wed, 02 Oct 2019 06:31:26 GMT

←Older revision		Revision as of 06:31, 2 October 2019
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	'''Unreleased structure'''		'''Unreleased structure'''

-	The entry 6kam is ON HOLD	+	The entry 6kam is ON HOLD until Paper Publication

	Authors:		Authors:

OCA: Protected "6kam" [edit=sysop:move=sysop]

OCA — Wed, 03 Jul 2019 04:04:35 GMT

Protected "6kam" [edit=sysop:move=sysop]

←Older revision

Revision as of 04:04, 3 July 2019

OCA: New page: '''Unreleased structure''' The entry 6kam is ON HOLD Authors: Description: Category: Unreleased Structures

OCA — Wed, 03 Jul 2019 04:04:34 GMT

New page: '''Unreleased structure''' The entry 6kam is ON HOLD Authors: Description: Category: Unreleased Structures

New page

'''Unreleased structure'''

The entry 6kam is ON HOLD

Authors:

Description:
[[Category: Unreleased Structures]]

6kam - Revision history

OCA at 16:08, 29 January 2020

OCA at 06:31, 2 October 2019

OCA: Protected "6kam" [edit=sysop:move=sysop]

OCA: New page: '''Unreleased structure''' The entry 6kam is ON HOLD Authors: Description: Category: Unreleased Structures