OCA at 10:44, 22 November 2023

OCA — Wed, 22 Nov 2023 10:44:29 GMT

←Older revision		Revision as of 10:44, 22 November 2023
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	==S. aureus FtsZ in complex with 3-(1-(5-bromo-4-(4-(trifluoromethyl)phenyl)oxazol-2-yl)ethoxy)-2,6-difluorobenzamide (compound 2)==		==S. aureus FtsZ in complex with 3-(1-(5-bromo-4-(4-(trifluoromethyl)phenyl)oxazol-2-yl)ethoxy)-2,6-difluorobenzamide (compound 2)==
-	<StructureSection load='6kvp' size='340' side='right'caption='[[6kvp]]' scene=''>	+	<StructureSection load='6kvp' size='340' side='right'caption='[[6kvp]], [[Resolution\|resolution]] 1.40Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6KVP OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=6KVP FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[6kvp]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Staphylococcus_aureus Staphylococcus aureus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6KVP OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=6KVP FirstGlance]. <br>
-	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=6kvp FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6kvp OCA], [https://pdbe.org/6kvp PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=6kvp RCSB], [https://www.ebi.ac.uk/pdbsum/6kvp PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=6kvp ProSAT]</span></td></tr>	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 1.4Å</td></tr>
		+	<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=GDP:GUANOSINE-5-DIPHOSPHATE'>GDP</scene>, <scene name='pdbligand=ZI1:3-[(1R)-1-[5-bromanyl-4-[4-(trifluoromethyl)phenyl]-1,3-oxazol-2-yl]ethoxy]-2,6-bis(fluoranyl)benzamide'>ZI1</scene></td></tr>
		+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=6kvp FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6kvp OCA], [https://pdbe.org/6kvp PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=6kvp RCSB], [https://www.ebi.ac.uk/pdbsum/6kvp PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=6kvp ProSAT]</span></td></tr>
	</table>		</table>
		+	== Function ==
		+	[https://www.uniprot.org/uniprot/FTSZ_STAAR FTSZ_STAAR] Essential cell division protein that forms a contractile ring structure (Z ring) at the future cell division site. The regulation of the ring assembly controls the timing and the location of cell division. One of the functions of the FtsZ ring is to recruit other cell division proteins to the septum to produce a new cell wall between the dividing cells. Binds GTP and shows GTPase activity.
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	Addressing the growing problem of antibiotic resistance requires the development of new drugs with novel antibacterial targets. FtsZ has been identified as an appealing new target for antibacterial agents. Here, we describe the structure-guided design of a new fluorescent probe (BOFP) in which a BODIPY fluorophore has been conjugated to an oxazole-benzamide FtsZ inhibitor. Crystallographic studies have enabled us to identify the optimal position for tethering the fluorophore that facilitates the high-affinity FtsZ binding of BOFP. Fluorescence anisotropy studies demonstrate that BOFP binds the FtsZ proteins from the Gram-positive pathogens Staphylococcus aureus, Enterococcus faecalis, Enterococcus faecium, Streptococcus pyogenes, Streptococcus agalactiae, and Streptococcus pneumoniae with Kd values of 0.6-4.6 microM. Significantly, BOFP binds the FtsZ proteins from the Gram-negative pathogens Escherichia coli, Klebsiella pneumoniae, Pseudomonas aeruginosa, and Acinetobacter baumannii with an even higher affinity (Kd = 0.2-0.8 microM). Fluorescence microscopy studies reveal that BOFP can effectively label FtsZ in all the above Gram-positive and Gram-negative pathogens. In addition, BOFP is effective at monitoring the impact of non-fluorescent inhibitors on FtsZ localization in these target pathogens. Viewed as a whole, our results highlight the utility of BOFP as a powerful tool for identifying new broad-spectrum FtsZ inhibitors and understanding their mechanisms of action.
		+
		+	Structure-Guided Design of a Fluorescent Probe for the Visualization of FtsZ in Clinically Important Gram-Positive and Gram-Negative Bacterial Pathogens.,Ferrer-Gonzalez E, Fujita J, Yoshizawa T, Nelson JM, Pilch AJ, Hillman E, Ozawa M, Kuroda N, Al-Tameemi HM, Boyd JM, LaVoie EJ, Matsumura H, Pilch DS Sci Rep. 2019 Dec 27;9(1):20092. doi: 10.1038/s41598-019-56557-x. PMID:31882782<ref>PMID:31882782</ref>
		+
		+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
		+	</div>
		+	<div class="pdbe-citations 6kvp" style="background-color:#fffaf0;"></div>

	==See Also==		==See Also==
	*[[Cell division protein 3D structures\|Cell division protein 3D structures]]		*[[Cell division protein 3D structures\|Cell division protein 3D structures]]
		+	== References ==
		+	<references/>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
	[[Category: Large Structures]]		[[Category: Large Structures]]
		+	[[Category: Staphylococcus aureus]]
	[[Category: Ferrer-Gonzalez E]]		[[Category: Ferrer-Gonzalez E]]
	[[Category: Fujita J]]		[[Category: Fujita J]]

OCA at 11:44, 23 March 2022

OCA — Wed, 23 Mar 2022 11:44:55 GMT

←Older revision		Revision as of 11:44, 23 March 2022
Line 1:		Line 1:
-	'''Unreleased structure'''

-	~~The entry~~ 6kvp is ~~ON HOLD until Paper Publication~~	+	==S. aureus FtsZ in complex with 3-(1-(5-bromo-4-(4-(trifluoromethyl)phenyl)oxazol-2-yl)ethoxy)-2,6-difluorobenzamide (compound 2)==
		+	<StructureSection load='6kvp' size='340' side='right'caption='[[6kvp]]' scene=''>
		+	== Structural highlights ==
		+	<table><tr><td colspan='2'>Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6KVP OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=6KVP FirstGlance]. <br>
		+	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=6kvp FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6kvp OCA], [https://pdbe.org/6kvp PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=6kvp RCSB], [https://www.ebi.ac.uk/pdbsum/6kvp PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=6kvp ProSAT]</span></td></tr>
		+	</table>

-	~~Authors~~:	+	==See Also==
-		+	*[[Cell division protein 3D structures\|Cell division protein 3D structures]]
-	~~Description~~:	+	__TOC__
-	[[Category: ~~Unreleased Structures~~]]	+	</StructureSection>
		+	[[Category: Large Structures]]
		+	[[Category: Ferrer-Gonzalez E]]
		+	[[Category: Fujita J]]
		+	[[Category: Hillman E]]
		+	[[Category: Kuroda N]]
		+	[[Category: LaVoie EJ]]
		+	[[Category: Matsumura H]]
		+	[[Category: Nelson JM]]
		+	[[Category: Ozawa M]]
		+	[[Category: Parhi AK]]
		+	[[Category: Pilch AJ]]
		+	[[Category: Pilch DS]]
		+	[[Category: Yoshizawa T]]

OCA: Protected "6kvp" [edit=sysop:move=sysop]

OCA — Wed, 02 Oct 2019 06:51:24 GMT

Protected "6kvp" [edit=sysop:move=sysop]

←Older revision

Revision as of 06:51, 2 October 2019

OCA: New page: '''Unreleased structure''' The entry 6kvp is ON HOLD until Paper Publication Authors: Description: Category: Unreleased Structures

OCA — Wed, 02 Oct 2019 06:51:22 GMT

New page: '''Unreleased structure''' The entry 6kvp is ON HOLD until Paper Publication Authors: Description: Category: Unreleased Structures

New page

'''Unreleased structure'''

The entry 6kvp is ON HOLD until Paper Publication

Authors:

Description:
[[Category: Unreleased Structures]]

6kvp - Revision history

OCA at 10:44, 22 November 2023

OCA at 11:44, 23 March 2022

OCA: Protected "6kvp" [edit=sysop:move=sysop]

OCA: New page: '''Unreleased structure''' The entry 6kvp is ON HOLD until Paper Publication Authors: Description: Category: Unreleased Structures