6l7q - Revision history

OCA at 10:45, 27 March 2024

OCA — Wed, 27 Mar 2024 10:45:41 GMT

←Older revision		Revision as of 10:45, 27 March 2024
Line 3:		Line 3:
	<StructureSection load='6l7q' size='340' side='right'caption='[[6l7q]], [[Resolution\|resolution]] 1.16Å' scene=''>		<StructureSection load='6l7q' size='340' side='right'caption='[[6l7q]], [[Resolution\|resolution]] 1.16Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[6l7q]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/~~Pyryc Pyryc~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6L7Q OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=6L7Q FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[6l7q]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Pyrococcus_yayanosii_CH1 Pyrococcus yayanosii CH1]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6L7Q OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=6L7Q FirstGlance]. <br>
-	</td></tr><tr id='~~gene~~'><td class="sblockLbl"><b>[[~~Gene~~\|~~Gene~~:]]</b></td><td class="sblockDat">~~PYCH_01220 (~~[~~https://www~~.~~ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info~~&~~srchmode=5&id=529709 PYRYC])~~</td></tr>	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 1.16Å</td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=6l7q FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6l7q OCA], [https://pdbe.org/6l7q PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=6l7q RCSB], [https://www.ebi.ac.uk/pdbsum/6l7q PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=6l7q ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=6l7q FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6l7q OCA], [https://pdbe.org/6l7q PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=6l7q RCSB], [https://www.ebi.ac.uk/pdbsum/6l7q PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=6l7q ProSAT]</span></td></tr>
	</table>		</table>
-	~~<div style~~=~~"background-color:#fffaf0;">~~	+	== Function ==
-	=~~= Publication Abstract from PubMed~~ ==	+	[https://www.uniprot.org/uniprot/F8AFT0_PYRYC F8AFT0_PYRYC]
-	We report the crystal structure of PYCH_01220, a hypothetical protein in Pyrococcus yayanosii CH1. This protein is composed of two domains, named Domain A and Domain B. While Domain B is not significantly homologous to known protein structures, Domain A is structurally analogous to the C-terminal ribonuclease domain of Escherichia coli colicin D. Domain A has a positively charged surface patch rendered by 13 basic residues, eight arginine or lysine residues of which are evolutionarily conserved. Electrophoretic mobility shift assays showed that PYCH_01220 binds to DNA, and charge-inversion mutations on this patch negatively affect the DNA binding, suggesting that the function of PYCH_01220 might involve nucleic acid-binding via the positively charged patch. This article is protected by copyright. All rights reserved.	+
-		+
-	~~Crystal structure of PYCH_01220 from Pyrococcus yayanosii potentially involved in binding nucleic acid.,Noh H, Jeon JH, Kim YG, Oh BH Proteins. 2020 Nov 25. doi~~: ~~10.1002~~/~~prot.26029. PMID:33236809<ref>PMID:33236809<~~/~~ref>~~	+
-		+
-	~~From MEDLINE®/PubMed®, a database of the U~~.S. ~~National Library of Medicine.<br>~~	+
-	</~~div>~~	+
-	~~<div class="pdbe-citations 6l7q" style="background-color:#fffaf0;"></div>~~	+
-	~~== References ==~~	+
-	~~<references~~/>	+
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: ~~Pyryc~~]]	+	[[Category: Pyrococcus yayanosii CH1]]
-	[[Category: Jeon, J H]]	+	[[Category: Jeon J-H]]
-	[[Category: Noh, H]]	+	[[Category: Noh H]]
-	[[Category: Oh, B H]]	+	[[Category: Oh B-H]]
-	~~[[Category: Cytosolic protein]]~~	+
-	~~[[Category: Hypothetical protein]]~~	+
-	~~[[Category: Unknown function~~]]	+

OCA at 06:50, 17 March 2021

OCA — Wed, 17 Mar 2021 06:50:58 GMT

←Older revision		Revision as of 06:50, 17 March 2021
Line 3:		Line 3:
	<StructureSection load='6l7q' size='340' side='right'caption='[[6l7q]], [[Resolution\|resolution]] 1.16Å' scene=''>		<StructureSection load='6l7q' size='340' side='right'caption='[[6l7q]], [[Resolution\|resolution]] 1.16Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[6l7q]] is a 1 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/Pyryc Pyryc]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6L7Q OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://proteopedia.org/fgij/fg.htm?mol=6L7Q FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[6l7q]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Pyryc Pyryc]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6L7Q OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=6L7Q FirstGlance]. <br>
-	</td></tr><tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">PYCH_01220 ([~~http~~://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=529709 PYRYC])</td></tr>	+	</td></tr><tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">PYCH_01220 ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=529709 PYRYC])</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://proteopedia.org/fgij/fg.htm?mol=6l7q FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6l7q OCA], [~~http~~://pdbe.org/6l7q PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=6l7q RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/6l7q PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=6l7q ProSAT]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=6l7q FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6l7q OCA], [https://pdbe.org/6l7q PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=6l7q RCSB], [https://www.ebi.ac.uk/pdbsum/6l7q PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=6l7q ProSAT]</span></td></tr>
	</table>		</table>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">

OCA at 06:45, 9 December 2020

OCA — Wed, 09 Dec 2020 06:45:29 GMT

←Older revision		Revision as of 06:45, 9 December 2020
Line 1:		Line 1:

	==Crystal structure of a hypothetical protein PYCH_01220 derived from Pyrococcus yayanosii==		==Crystal structure of a hypothetical protein PYCH_01220 derived from Pyrococcus yayanosii==
-	<StructureSection load='6l7q' size='340' side='right'caption='[[6l7q]]' scene=''>	+	<StructureSection load='6l7q' size='340' side='right'caption='[[6l7q]], [[Resolution\|resolution]] 1.16Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6L7Q OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=6L7Q FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[6l7q]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Pyryc Pyryc]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6L7Q OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=6L7Q FirstGlance]. <br>
-	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=6l7q FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6l7q OCA], [http://pdbe.org/6l7q PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6l7q RCSB], [http://www.ebi.ac.uk/pdbsum/6l7q PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6l7q ProSAT]</span></td></tr>	+	</td></tr><tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">PYCH_01220 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=529709 PYRYC])</td></tr>
		+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=6l7q FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6l7q OCA], [http://pdbe.org/6l7q PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6l7q RCSB], [http://www.ebi.ac.uk/pdbsum/6l7q PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6l7q ProSAT]</span></td></tr>
	</table>		</table>
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	We report the crystal structure of PYCH_01220, a hypothetical protein in Pyrococcus yayanosii CH1. This protein is composed of two domains, named Domain A and Domain B. While Domain B is not significantly homologous to known protein structures, Domain A is structurally analogous to the C-terminal ribonuclease domain of Escherichia coli colicin D. Domain A has a positively charged surface patch rendered by 13 basic residues, eight arginine or lysine residues of which are evolutionarily conserved. Electrophoretic mobility shift assays showed that PYCH_01220 binds to DNA, and charge-inversion mutations on this patch negatively affect the DNA binding, suggesting that the function of PYCH_01220 might involve nucleic acid-binding via the positively charged patch. This article is protected by copyright. All rights reserved.
		+
		+	Crystal structure of PYCH_01220 from Pyrococcus yayanosii potentially involved in binding nucleic acid.,Noh H, Jeon JH, Kim YG, Oh BH Proteins. 2020 Nov 25. doi: 10.1002/prot.26029. PMID:33236809<ref>PMID:33236809</ref>
		+
		+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
		+	</div>
		+	<div class="pdbe-citations 6l7q" style="background-color:#fffaf0;"></div>
		+	== References ==
		+	<references/>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: Jeon J-H]]	+	[[Category: Pyryc]]
-	[[Category: Noh H]]	+	[[Category: Jeon, J H]]
-	[[Category: Oh B-H]]	+	[[Category: Noh, H]]
		+	[[Category: Oh, B H]]
		+	[[Category: Cytosolic protein]]
		+	[[Category: Hypothetical protein]]
		+	[[Category: Unknown function]]

OCA at 07:20, 4 November 2020

OCA — Wed, 04 Nov 2020 07:20:46 GMT

←Older revision		Revision as of 07:20, 4 November 2020
Line 1:		Line 1:
-	'''Unreleased structure'''

-	~~The entry~~ 6l7q ~~is ON HOLD until Paper Publication~~	+	==Crystal structure of a hypothetical protein PYCH_01220 derived from Pyrococcus yayanosii==
-		+	<StructureSection load='6l7q' size='340' side='right'caption='[[6l7q]]' scene=''>
-	~~Authors~~: ~~Jeon, J~~.-H., ~~Noh~~, H., Oh, B.-H.	+	== Structural highlights ==
-		+	<table><tr><td colspan='2'>Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6L7Q OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=6L7Q FirstGlance]. <br>
-	~~Description: Crystal structure of a hypothetical protein PYCH_01220 derived from Pyrococcus yayanosii~~	+	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=6l7q FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6l7q OCA], [http://pdbe.org/6l7q PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6l7q RCSB], [http://www.ebi.ac.uk/pdbsum/6l7q PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6l7q ProSAT]</span></td></tr>
-	[[Category: ~~Unreleased~~ Structures]]	+	</table>
-	[[Category: ~~Oh, B.~~-H]]	+	__TOC__
-	[[Category: Noh, H]]	+	</StructureSection>
-	[[Category: ~~Jeon, J.~~-H]]	+	[[Category: Large Structures]]
		+	[[Category: Jeon J-H]]
		+	[[Category: Noh H]]
		+	[[Category: Oh B-H]]

OCA at 03:44, 5 August 2020

OCA — Wed, 05 Aug 2020 03:44:58 GMT

←Older revision		Revision as of 03:44, 5 August 2020
Line 3:		Line 3:
	The entry 6l7q is ON HOLD until Paper Publication		The entry 6l7q is ON HOLD until Paper Publication

-	Authors: Jeon, J.-H., ~~Kwak~~, ~~M.-J~~., Oh, B.-H.	+	Authors: Jeon, J.-H., Noh, H., Oh, B.-H.

	Description: Crystal structure of a hypothetical protein PYCH_01220 derived from Pyrococcus yayanosii		Description: Crystal structure of a hypothetical protein PYCH_01220 derived from Pyrococcus yayanosii
	[[Category: Unreleased Structures]]		[[Category: Unreleased Structures]]
	[[Category: Oh, B.-H]]		[[Category: Oh, B.-H]]
		+	[[Category: Noh, H]]
	[[Category: Jeon, J.-H]]		[[Category: Jeon, J.-H]]
-	[[Category: Kwak, M.-J]]

OCA at 13:24, 20 November 2019

OCA — Wed, 20 Nov 2019 13:24:00 GMT

←Older revision		Revision as of 13:24, 20 November 2019
Line 1:		Line 1:
	'''Unreleased structure'''		'''Unreleased structure'''

-	The entry 6l7q is ON HOLD	+	The entry 6l7q is ON HOLD until Paper Publication

	Authors: Jeon, J.-H., Kwak, M.-J., Oh, B.-H.		Authors: Jeon, J.-H., Kwak, M.-J., Oh, B.-H.

OCA: Protected "6l7q" [edit=sysop:move=sysop]

OCA — Wed, 13 Nov 2019 09:15:33 GMT

Protected "6l7q" [edit=sysop:move=sysop]

←Older revision

Revision as of 09:15, 13 November 2019

OCA: New page: '''Unreleased structure''' The entry 6l7q is ON HOLD Authors: Jeon, J.-H., Kwak, M.-J., Oh, B.-H. Description: Crystal structure of a hypothetical protein PYCH_01220 derived from Pyroc...

OCA — Wed, 13 Nov 2019 09:15:32 GMT

New page: '''Unreleased structure''' The entry 6l7q is ON HOLD Authors: Jeon, J.-H., Kwak, M.-J., Oh, B.-H. Description: Crystal structure of a hypothetical protein PYCH_01220 derived from Pyroc...

New page

'''Unreleased structure'''

The entry 6l7q is ON HOLD

Authors: Jeon, J.-H., Kwak, M.-J., Oh, B.-H.

Description: Crystal structure of a hypothetical protein PYCH_01220 derived from Pyrococcus yayanosii
[[Category: Unreleased Structures]]
[[Category: Oh, B.-H]]
[[Category: Jeon, J.-H]]
[[Category: Kwak, M.-J]]