6lbc - Revision history

OCA at 10:55, 22 November 2023

OCA — Wed, 22 Nov 2023 10:55:01 GMT

←Older revision		Revision as of 10:55, 22 November 2023
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	<StructureSection load='6lbc' size='340' side='right'caption='[[6lbc]], [[Resolution\|resolution]] 1.80Å' scene=''>		<StructureSection load='6lbc' size='340' side='right'caption='[[6lbc]], [[Resolution\|resolution]] 1.80Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[6lbc]] is a 6 chain structure with sequence from [https://en.wikipedia.org/wiki/~~Kuruma_prawn Kuruma prawn~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6LBC OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=6LBC FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[6lbc]] is a 6 chain structure with sequence from [https://en.wikipedia.org/wiki/Penaeus_japonicus Penaeus japonicus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6LBC OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=6LBC FirstGlance]. <br>
-	</td></tr><tr id='~~ligand~~'><td class="sblockLbl"><b>[[~~Ligand~~\|~~Ligands~~:]]</b></td><td class="sblockDat" id="~~ligandDat~~">~~<scene name='pdbligand=FE:FE+(III)+ION'>FE</scene>~~</td></tr>	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 1.801Å</td></tr>
-	<tr id='~~activity~~'><td class="sblockLbl"><b>~~Activity~~:</b></td><td class="sblockDat"><~~span class~~='~~plainlinks~~'>~~[https://en.wikipedia.org/wiki/Ferroxidase Ferroxidase], with EC number [https://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.16.3.1 1.16.3.1]~~ </~~span~~></td></tr>	+	<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=FE:FE+(III)+ION'>FE</scene></td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=6lbc FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6lbc OCA], [https://pdbe.org/6lbc PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=6lbc RCSB], [https://www.ebi.ac.uk/pdbsum/6lbc PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=6lbc ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=6lbc FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6lbc OCA], [https://pdbe.org/6lbc PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=6lbc RCSB], [https://www.ebi.ac.uk/pdbsum/6lbc PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=6lbc ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
-	[[https://www.uniprot.org/uniprot/T2B7E1_PENJP T2B7E1_PENJP]] Stores iron in a soluble, non-toxic, readily available form. Important for iron homeostasis. Iron is taken up in the ferrous form and deposited as ferric hydroxides after oxidation.[RuleBase:RU361145]	+	[https://www.uniprot.org/uniprot/T2B7E1_PENJP T2B7E1_PENJP] Stores iron in a soluble, non-toxic, readily available form. Important for iron homeostasis. Iron is taken up in the ferrous form and deposited as ferric hydroxides after oxidation.[RuleBase:RU361145]
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
	== Publication Abstract from PubMed ==		== Publication Abstract from PubMed ==
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	</div>		</div>
	<div class="pdbe-citations 6lbc" style="background-color:#fffaf0;"></div>		<div class="pdbe-citations 6lbc" style="background-color:#fffaf0;"></div>
		+
		+	==See Also==
		+	*[[Ferritin 3D structures\|Ferritin 3D structures]]
	== References ==		== References ==
	<references/>		<references/>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: Ferroxidase]]
-	[[Category: Kuruma prawn]]
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: ~~Chen, H~~]]	+	[[Category: Penaeus japonicus]]
-	[[Category: ~~Zhang, T~~]]	+	[[Category: Chen H]]
-	[[Category: ~~Zhao, G~~]]	+	[[Category: Zhang T]]
-	[[Category: ~~Arginine-arginine interaction]]~~	+	[[Category: Zhao G]]
-	~~[[Category: Biosynthetic protein]]~~	+
-	~~[[Category: Metal binding protein~~]]	+

OCA at 12:23, 9 June 2021

OCA — Wed, 09 Jun 2021 12:23:46 GMT

←Older revision		Revision as of 12:23, 9 June 2021
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	==shrimp ferritin-T158R==		==shrimp ferritin-T158R==
-	<StructureSection load='6lbc' size='340' side='right'caption='[[6lbc]]' scene=''>	+	<StructureSection load='6lbc' size='340' side='right'caption='[[6lbc]], [[Resolution\|resolution]] 1.80Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6LBC OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://proteopedia.org/fgij/fg.htm?mol=6LBC FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[6lbc]] is a 6 chain structure with sequence from [https://en.wikipedia.org/wiki/Kuruma_prawn Kuruma prawn]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6LBC OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=6LBC FirstGlance]. <br>
-	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://proteopedia.org/fgij/fg.htm?mol=6lbc FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6lbc OCA], [~~http~~://pdbe.org/6lbc PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=6lbc RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/6lbc PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=6lbc ProSAT]</span></td></tr>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=FE:FE+(III)+ION'>FE</scene></td></tr>
		+	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[https://en.wikipedia.org/wiki/Ferroxidase Ferroxidase], with EC number [https://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.16.3.1 1.16.3.1] </span></td></tr>
		+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=6lbc FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6lbc OCA], [https://pdbe.org/6lbc PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=6lbc RCSB], [https://www.ebi.ac.uk/pdbsum/6lbc PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=6lbc ProSAT]</span></td></tr>
	</table>		</table>
		+	== Function ==
		+	[[https://www.uniprot.org/uniprot/T2B7E1_PENJP T2B7E1_PENJP]] Stores iron in a soluble, non-toxic, readily available form. Important for iron homeostasis. Iron is taken up in the ferrous form and deposited as ferric hydroxides after oxidation.[RuleBase:RU361145]
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	Protein colloid crystals are considered as high porous soft materials, presenting great potentials in nutrients and drug encapsulation, but protein crystal fabrication usually needs precipitant and high protein concentration. Herein, an easy implemented approach was reported for the construction of protein colloid crystals in diluted solution with shimp ferritin as building blocks by taking advantage of the strength of multiple intermolecular arginine-arginine interactions. The X-ray single-crystal structure reveals that a group of exquisite arginine-arginine interactions between two neighboring ferritin enable them self-assembly into long-range ordered protein soft materials. The arginine-arginine interactions mediate crystal generation favored at pH 9.5 with 200 mM NaCl, and the resulting colloid crystals exhibit high thermal stability (90 degrees C for 30 min). Importantly, the interglobular cavity in colloid crystals is three times larger in volume than that of intrinsic ferritin cavity in each unit cell, which can be used for molecular encapsulation.
		+
		+	Construction of thermally robust and porous shrimp ferritin crystalline for molecular encapsulation through intermolecular arginine-arginine attractions.,Chen H, Zhang T, Tan X, Wang Y, Liu Y, Zhao G Food Chem. 2021 Jul 1;349:129089. doi: 10.1016/j.foodchem.2021.129089. Epub 2021 , Jan 19. PMID:33548881<ref>PMID:33548881</ref>
		+
		+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
		+	</div>
		+	<div class="pdbe-citations 6lbc" style="background-color:#fffaf0;"></div>
		+	== References ==
		+	<references/>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
		+	[[Category: Ferroxidase]]
		+	[[Category: Kuruma prawn]]
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: Chen H]]	+	[[Category: Chen, H]]
-	[[Category: Zhang T]]	+	[[Category: Zhang, T]]
-	[[Category: Zhao G]]	+	[[Category: Zhao, G]]
		+	[[Category: Arginine-arginine interaction]]
		+	[[Category: Biosynthetic protein]]
		+	[[Category: Metal binding protein]]

OCA at 06:51, 25 November 2020

OCA — Wed, 25 Nov 2020 06:51:12 GMT

←Older revision		Revision as of 06:51, 25 November 2020
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-	'''Unreleased structure'''

-	~~The entry~~ 6lbc is ~~ON HOLD until Paper Publication~~	+	==shrimp ferritin-T158R==
-		+	<StructureSection load='6lbc' size='340' side='right'caption='[[6lbc]]' scene=''>
-	~~Authors~~:	+	== Structural highlights ==
-		+	<table><tr><td colspan='2'>Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6LBC OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=6LBC FirstGlance]. <br>
-	~~Description~~:	+	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=6lbc FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6lbc OCA], [http://pdbe.org/6lbc PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6lbc RCSB], [http://www.ebi.ac.uk/pdbsum/6lbc PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6lbc ProSAT]</span></td></tr>
-	[[Category: ~~Unreleased Structures~~]]	+	</table>
		+	__TOC__
		+	</StructureSection>
		+	[[Category: Large Structures]]
		+	[[Category: Chen H]]
		+	[[Category: Zhang T]]
		+	[[Category: Zhao G]]

OCA at 08:29, 17 June 2020

OCA — Wed, 17 Jun 2020 08:29:52 GMT

←Older revision		Revision as of 08:29, 17 June 2020
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	'''Unreleased structure'''		'''Unreleased structure'''

-	The entry 6lbc is ON HOLD	+	The entry 6lbc is ON HOLD until Paper Publication

	Authors:		Authors:

OCA: Protected "6lbc" [edit=sysop:move=sysop]

OCA — Wed, 20 Nov 2019 13:31:22 GMT

Protected "6lbc" [edit=sysop:move=sysop]

←Older revision

Revision as of 13:31, 20 November 2019

OCA: New page: '''Unreleased structure''' The entry 6lbc is ON HOLD Authors: Description: Category: Unreleased Structures

OCA — Wed, 20 Nov 2019 13:31:20 GMT

New page: '''Unreleased structure''' The entry 6lbc is ON HOLD Authors: Description: Category: Unreleased Structures

New page

'''Unreleased structure'''

The entry 6lbc is ON HOLD

Authors:

Description:
[[Category: Unreleased Structures]]