6lc1 - Revision history

OCA at 10:56, 22 November 2023

OCA — Wed, 22 Nov 2023 10:56:03 GMT

←Older revision		Revision as of 10:56, 22 November 2023
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	<StructureSection load='6lc1' size='340' side='right'caption='[[6lc1]], [[Resolution\|resolution]] 3.12Å' scene=''>		<StructureSection load='6lc1' size='340' side='right'caption='[[6lc1]], [[Resolution\|resolution]] 3.12Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[6lc1]] is a 8 chain structure with sequence from [~~http://en.wikipedia.org/wiki/ ] and [http~~://en.wikipedia.org/wiki/~~Human Human~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6LC1 OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=6LC1 FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[6lc1]] is a 8 chain structure with sequence from [https://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6LC1 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=6LC1 FirstGlance]. <br>
-	</td></tr><tr id='~~ligand~~'><td class="sblockLbl"><b>[[~~Ligand~~\|~~Ligands~~:]]</b></td><td class="sblockDat"~~><scene name~~=~~'pdbligand=ZN:ZINC+ION'>ZN</scene~~></td></tr>	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 3.12Å</td></tr>
-	<tr id='~~gene~~'><td class="sblockLbl"><b>[[~~Gene~~\|~~Gene~~:]]</b></td><td class="sblockDat">~~NR4A1, GFRP1, HMR, NAK1 ([http~~:/~~/www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=9606 HUMAN])~~</td></tr>	+	<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=6lc1 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6lc1 OCA], [~~http~~://pdbe.org/6lc1 PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=6lc1 RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/6lc1 PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=6lc1 ProSAT]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=6lc1 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6lc1 OCA], [https://pdbe.org/6lc1 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=6lc1 RCSB], [https://www.ebi.ac.uk/pdbsum/6lc1 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=6lc1 ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
-	[~~[http~~://www.uniprot.org/uniprot/NR4A1_HUMAN NR4A1_HUMAN]] Orphan nuclear receptor. May act concomitantly with NURR1 in regulating the expression of delayed-early genes during liver regeneration. Binds the NGFI-B response element (NBRE) 5'-AAAAGGTCA-3' (By similarity). May inhibit NF-kappa-B transactivation of IL2.<ref>PMID:15466594</ref>	+	[https://www.uniprot.org/uniprot/NR4A1_HUMAN NR4A1_HUMAN] Orphan nuclear receptor. May act concomitantly with NURR1 in regulating the expression of delayed-early genes during liver regeneration. Binds the NGFI-B response element (NBRE) 5'-AAAAGGTCA-3' (By similarity). May inhibit NF-kappa-B transactivation of IL2.<ref>PMID:15466594</ref>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
	== Publication Abstract from PubMed ==		== Publication Abstract from PubMed ==
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	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: ~~Human~~]]	+	[[Category: Homo sapiens]]
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: Chen, Y]]	+	[[Category: Chen Y]]
-	[[Category: Jiang, L]]	+	[[Category: Jiang L]]
-	~~[[Category: Dna binding protein]]~~	+
-	~~[[Category: Dna binding protein-dna complex]]~~	+
-	~~[[Category: Nuclear receptor~~]]	+

OCA at 13:00, 25 December 2019

OCA — Wed, 25 Dec 2019 13:00:06 GMT

←Older revision		Revision as of 13:00, 25 December 2019
Line 3:		Line 3:
	<StructureSection load='6lc1' size='340' side='right'caption='[[6lc1]], [[Resolution\|resolution]] 3.12Å' scene=''>		<StructureSection load='6lc1' size='340' side='right'caption='[[6lc1]], [[Resolution\|resolution]] 3.12Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[6lc1]] is a 8 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6LC1 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6LC1 FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[6lc1]] is a 8 chain structure with sequence from [http://en.wikipedia.org/wiki/ ] and [http://en.wikipedia.org/wiki/Human Human]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6LC1 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6LC1 FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
		+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">NR4A1, GFRP1, HMR, NAK1 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=9606 HUMAN])</td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6lc1 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6lc1 OCA], [http://pdbe.org/6lc1 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6lc1 RCSB], [http://www.ebi.ac.uk/pdbsum/6lc1 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6lc1 ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6lc1 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6lc1 OCA], [http://pdbe.org/6lc1 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6lc1 RCSB], [http://www.ebi.ac.uk/pdbsum/6lc1 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6lc1 ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
	[[http://www.uniprot.org/uniprot/NR4A1_HUMAN NR4A1_HUMAN]] Orphan nuclear receptor. May act concomitantly with NURR1 in regulating the expression of delayed-early genes during liver regeneration. Binds the NGFI-B response element (NBRE) 5'-AAAAGGTCA-3' (By similarity). May inhibit NF-kappa-B transactivation of IL2.<ref>PMID:15466594</ref>		[[http://www.uniprot.org/uniprot/NR4A1_HUMAN NR4A1_HUMAN]] Orphan nuclear receptor. May act concomitantly with NURR1 in regulating the expression of delayed-early genes during liver regeneration. Binds the NGFI-B response element (NBRE) 5'-AAAAGGTCA-3' (By similarity). May inhibit NF-kappa-B transactivation of IL2.<ref>PMID:15466594</ref>
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	The nuclear receptor NR4A subfamily (NR4A1/NGFI-B, NR4A2/Nurr1 and NR4A3/NOR-1) can recognize different classes of DNA response elements either as a monomer, homodimer, or heterodimer. In this study, we determined the structure of the NR4A1 DNA-binding domain (NR4A1-DBD) bound to natural Nur-responsive elements (NurREs) in the promoter region of the pituitary proopiomelanocortin (POMC) gene (NurREPOMC) at 3.12 A resolution. The NR4A1-DBD molecules bound independently to this element in our structure. The N-terminal helix H1 forms specific contacts with major groove, and C-terminal extension interact extensively with minor groove. Moreover our modelling structure of NR4A1 large fragment complexed with NurREPOMC indicated that ligand binding domain of NR4A might form dimer interactions to help recognize DNA. Overall, our analyses provide a molecular basis for DNA binding of NR4A proteins as a homodimer and novel insight into the molecular functions of NR4A modulation of gene expression.
		+
		+	Structural basis of NR4A1 bound to the human pituitary proopiomelanocortin gene promoter.,Jiang L, Wei H, Yan N, Dai S, Li J, Qu L, Chen X, Guo M, Chen Z, Chen Y Biochem Biophys Res Commun. 2019 Dec 7. pii: S0006-291X(19)32320-4. doi:, 10.1016/j.bbrc.2019.11.192. PMID:31822342<ref>PMID:31822342</ref>
		+
		+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
		+	</div>
		+	<div class="pdbe-citations 6lc1" style="background-color:#fffaf0;"></div>
	== References ==		== References ==
	<references/>		<references/>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
		+	[[Category: Human]]
	[[Category: Large Structures]]		[[Category: Large Structures]]
	[[Category: Chen, Y]]		[[Category: Chen, Y]]

OCA at 07:42, 18 December 2019

OCA — Wed, 18 Dec 2019 07:42:58 GMT

←Older revision		Revision as of 07:42, 18 December 2019
Line 1:		Line 1:
-	'''Unreleased structure'''

-	~~The entry~~ 6lc1 is ~~ON HOLD until Paper Publication~~	+	==Structural basis of NR4A1 bound to the human pituitary proopiomelanocortin gene promoter==
-		+	<StructureSection load='6lc1' size='340' side='right'caption='[[6lc1]], [[Resolution\|resolution]] 3.12Å' scene=''>
-	~~Authors~~: ~~Jiang~~, L., ~~Chen~~, Y.	+	== Structural highlights ==
-		+	<table><tr><td colspan='2'>[[6lc1]] is a 8 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6LC1 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6LC1 FirstGlance]. <br>
-	~~Description~~: ~~Structural basis~~ of ~~NR4A1 bound to~~ the ~~human pituitary proopiomelanocortin gene promoter~~	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
-	[[Category: ~~Unreleased~~ Structures]]	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6lc1 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6lc1 OCA], [http://pdbe.org/6lc1 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6lc1 RCSB], [http://www.ebi.ac.uk/pdbsum/6lc1 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6lc1 ProSAT]</span></td></tr>
		+	</table>
		+	== Function ==
		+	[[http://www.uniprot.org/uniprot/NR4A1_HUMAN NR4A1_HUMAN]] Orphan nuclear receptor. May act concomitantly with NURR1 in regulating the expression of delayed-early genes during liver regeneration. Binds the NGFI-B response element (NBRE) 5'-AAAAGGTCA-3' (By similarity). May inhibit NF-kappa-B transactivation of IL2.<ref>PMID:15466594</ref>
		+	== References ==
		+	<references/>
		+	__TOC__
		+	</StructureSection>
		+	[[Category: Large Structures]]
	[[Category: Chen, Y]]		[[Category: Chen, Y]]
	[[Category: Jiang, L]]		[[Category: Jiang, L]]
		+	[[Category: Dna binding protein]]
		+	[[Category: Dna binding protein-dna complex]]
		+	[[Category: Nuclear receptor]]

OCA at 06:15, 4 December 2019

OCA — Wed, 04 Dec 2019 06:15:34 GMT

←Older revision		Revision as of 06:15, 4 December 2019
Line 1:		Line 1:
	'''Unreleased structure'''		'''Unreleased structure'''

-	The entry 6lc1 is ON HOLD	+	The entry 6lc1 is ON HOLD until Paper Publication

	Authors: Jiang, L., Chen, Y.		Authors: Jiang, L., Chen, Y.

OCA: Protected "6lc1" [edit=sysop:move=sysop]

OCA — Wed, 27 Nov 2019 05:05:04 GMT

Protected "6lc1" [edit=sysop:move=sysop]

←Older revision

Revision as of 05:05, 27 November 2019

OCA: New page: '''Unreleased structure''' The entry 6lc1 is ON HOLD Authors: Jiang, L., Chen, Y. Description: Structural basis of NR4A1 bound to the human pituitary proopiomelanocortin gene promoter ...

OCA — Wed, 27 Nov 2019 05:05:03 GMT

New page: '''Unreleased structure''' The entry 6lc1 is ON HOLD Authors: Jiang, L., Chen, Y. Description: Structural basis of NR4A1 bound to the human pituitary proopiomelanocortin gene promoter ...

New page

'''Unreleased structure'''

The entry 6lc1 is ON HOLD

Authors: Jiang, L., Chen, Y.

Description: Structural basis of NR4A1 bound to the human pituitary proopiomelanocortin gene promoter
[[Category: Unreleased Structures]]
[[Category: Chen, Y]]
[[Category: Jiang, L]]