OCA at 10:59, 22 November 2023

OCA — Wed, 22 Nov 2023 10:59:11 GMT

←Older revision		Revision as of 10:59, 22 November 2023
Line 1:		Line 1:
-	'''Unreleased structure'''

-	~~The entry~~ 6lfb is ~~ON HOLD until Paper~~ Publication	+	==E. coli Thioesterase I mutant DG==
		+	<StructureSection load='6lfb' size='340' side='right'caption='[[6lfb]], [[Resolution\|resolution]] 1.99Å' scene=''>
		+	== Structural highlights ==
		+	<table><tr><td colspan='2'>[[6lfb]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6LFB OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=6LFB FirstGlance]. <br>
		+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 1.99Å</td></tr>
		+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=6lfb FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6lfb OCA], [https://pdbe.org/6lfb PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=6lfb RCSB], [https://www.ebi.ac.uk/pdbsum/6lfb PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=6lfb ProSAT]</span></td></tr>
		+	</table>
		+	== Function ==
		+	[https://www.uniprot.org/uniprot/TESA_ECOLI TESA_ECOLI] Hydrolyzes only long chain acyl thioesters (C12-C18). Specificity similar to chymotrypsin.
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	Medium-chain fatty acids (C6-C10) have attracted much attention recently for their unique properties compared to their long-chain counterparts, including low melting points and relatively higher carbon conversion yield. Thioesterase enzymes, which can catalyze the hydrolysis of acyl-ACP (acyl carrier protein) to release free fatty acids (FAs), regulate both overall FA yields and acyl chain length distributions in bacterial and yeast fermentation cultures. These enzymes typically prefer longer chain substrates. Herein, seeking to increase bacterial production of MCFAs, we conducted structure-guided mutational screening of multiple residues in the substrate-binding pocket of the E. coli thioesterase enzyme 'TesA. Confirming our hypothesis that enhancing substrate selectivity for medium-chain acyl substrates would promote overall MCFA production, we found that replacement of residues lining the bottom of the pocket with more hydrophobic residues strongly promoted the C8 substrate selectivity of 'TesA. Specifically, two rounds of saturation mutagenesis led to the identification of the 'TesA(RD-2) variant that exhibited a 133-fold increase in selectivity for the C8-ACP substrate as compared to C16-ACP substrate. Moreover, the recombinant expression of this variant in an E. coli strain with a blocked beta-oxidation pathway led to a 1030% increase in the in vivo octanoic acid (C8) production titer. When this strain was fermented in a 5-L fed-batch bioreactor, it produced 2.7 g/L of free C8 (45%, molar fraction) and 7.9 g/L of total free FAs, which is the highest-to-date free C8 titer to date reported using the E. coli type II fatty acid synthetic pathway. Thus, reshaping the substrate binding pocket of a bacterial thioesterase enzyme by manipulating the hydrophobicity of multiple residues altered the substrate selectivity and therefore fatty acid product distributions in cells. Our study demonstrates the relevance of this strategy for increasing titers of industrially attractive MCFAs as fermentation products.

-	~~Authors: Xi, D~~., ~~Liuqing~~, C., ~~Guangyu~~, Y.	+	Structure-guided reshaping of the acyl binding pocket of 'TesA thioesterase enhances octanoic acid production in E. coli.,Deng X, Chen L, Hei M, Liu T, Feng Y, Yang GY Metab Eng. 2020 Sep;61:24-32. doi: 10.1016/j.ymben.2020.04.010. Epub 2020 Apr 24. PMID:32339761<ref>PMID:32339761</ref>

-	~~Description: E~~. ~~coli~~ Thioesterase ~~I mutant DG~~	+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
-	[[Category: ~~Unreleased~~ Structures]]	+	</div>
-	[[Category: ~~Xi, D~~]]	+	<div class="pdbe-citations 6lfb" style="background-color:#fffaf0;"></div>
-	[[Category: ~~Liuqing, C~~]]	+
-	[[Category: ~~Guangyu, Y~~]]	+	==See Also==
		+	*[[Thioesterase 3D structures\|Thioesterase 3D structures]]
		+	== References ==
		+	<references/>
		+	__TOC__
		+	</StructureSection>
		+	[[Category: Escherichia coli]]
		+	[[Category: Large Structures]]
		+	[[Category: Chen L]]
		+	[[Category: Deng X]]
		+	[[Category: Yang G]]

OCA at 10:32, 8 July 2020

OCA — Wed, 08 Jul 2020 10:32:36 GMT

←Older revision		Revision as of 10:32, 8 July 2020
Line 1:		Line 1:
	'''Unreleased structure'''		'''Unreleased structure'''

-	The entry 6lfb is ON HOLD	+	The entry 6lfb is ON HOLD until Paper Publication

	Authors: Xi, D., Liuqing, C., Guangyu, Y.		Authors: Xi, D., Liuqing, C., Guangyu, Y.

OCA: Protected "6lfb" [edit=sysop:move=sysop]

OCA — Wed, 11 Dec 2019 13:25:47 GMT

Protected "6lfb" [edit=sysop:move=sysop]

←Older revision

Revision as of 13:25, 11 December 2019

OCA: New page: '''Unreleased structure''' The entry 6lfb is ON HOLD Authors: Xi, D., Liuqing, C., Guangyu, Y. Description: E. coli Thioesterase I mutant DG Category: Unreleased Structures [[Categ...

OCA — Wed, 11 Dec 2019 13:25:45 GMT

New page: '''Unreleased structure''' The entry 6lfb is ON HOLD Authors: Xi, D., Liuqing, C., Guangyu, Y. Description: E. coli Thioesterase I mutant DG Category: Unreleased Structures [[Categ...

New page

'''Unreleased structure'''

The entry 6lfb is ON HOLD

Authors: Xi, D., Liuqing, C., Guangyu, Y.

Description: E. coli Thioesterase I mutant DG
[[Category: Unreleased Structures]]
[[Category: Xi, D]]
[[Category: Liuqing, C]]
[[Category: Guangyu, Y]]

6lfb - Revision history

OCA at 10:59, 22 November 2023

OCA at 10:32, 8 July 2020

OCA: Protected "6lfb" [edit=sysop:move=sysop]

OCA: New page: '''Unreleased structure''' The entry 6lfb is ON HOLD Authors: Xi, D., Liuqing, C., Guangyu, Y. Description: E. coli Thioesterase I mutant DG Category: Unreleased Structures [[Categ...