6lue - Revision history

OCA at 14:53, 29 November 2023

OCA — Wed, 29 Nov 2023 14:53:57 GMT

←Older revision		Revision as of 14:53, 29 November 2023
Line 3:		Line 3:
	<StructureSection load='6lue' size='340' side='right'caption='[[6lue]], [[Resolution\|resolution]] 2.10Å' scene=''>		<StructureSection load='6lue' size='340' side='right'caption='[[6lue]], [[Resolution\|resolution]] 2.10Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[6lue]] is a 2 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/~~Lk3_transgenic_mice Lk3 transgenic mice~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6LUE OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://proteopedia.org/fgij/fg.htm?mol=6LUE FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[6lue]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Mus_musculus Mus musculus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6LUE OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=6LUE FirstGlance]. <br>
-	</td></tr><tr id='~~ligand~~'><td class="sblockLbl"><b>[[~~Ligand~~\|~~Ligands~~:]]</b></td><td class="sblockDat" id="~~ligandDat~~">~~<scene name='pdbligand=EUL:2~~-~~bromanyl-N-(5~~,~~6,7,8-tetrahydro-~~[1]~~benzothiolo[~~2~~,3-d]pyrimidin-4-yl)benzamide'>EUL</scene>~~</td></tr>	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 2.1Å</td></tr>
-	<tr id='~~gene~~'><td class="sblockLbl"><b>[[~~Gene~~\|~~Gene~~:]]</b></td><td class="sblockDat">~~Cry1 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode~~=~~Info&srchmode~~=5~~&id=10090 LK3 transgenic mice~~])</td></tr>	+	<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=EUL:2-bromanyl-N-(5,6,7,8-tetrahydro-[1]benzothiolo[2,3-d]pyrimidin-4-yl)benzamide'>EUL</scene></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://proteopedia.org/fgij/fg.htm?mol=6lue FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6lue OCA], [~~http~~://pdbe.org/6lue PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=6lue RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/6lue PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=6lue ProSAT]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=6lue FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6lue OCA], [https://pdbe.org/6lue PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=6lue RCSB], [https://www.ebi.ac.uk/pdbsum/6lue PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=6lue ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
-	[~~[http~~://www.uniprot.org/uniprot/CRY1_MOUSE CRY1_MOUSE]] Blue light-dependent regulator of the circadian feedback loop. Inhibits CLOCK\|NPAS2-ARNTL E box-mediated transcription. Acts, in conjunction with CRY2, in maintaining period length and circadian rhythmicity. Has no photolyase activity. Capable of translocating circadian clock core proteins such as PER proteins to the nucleus. May inhibit CLOCK\|NPAS2-ARNTL transcriptional activity through stabilizing the unphosphorylated form of ARNTL.<ref>PMID:10428031</ref> <ref>PMID:16628007</ref> <ref>PMID:16478995</ref>	+	[https://www.uniprot.org/uniprot/CRY1_MOUSE CRY1_MOUSE] Blue light-dependent regulator of the circadian feedback loop. Inhibits CLOCK\|NPAS2-ARNTL E box-mediated transcription. Acts, in conjunction with CRY2, in maintaining period length and circadian rhythmicity. Has no photolyase activity. Capable of translocating circadian clock core proteins such as PER proteins to the nucleus. May inhibit CLOCK\|NPAS2-ARNTL transcriptional activity through stabilizing the unphosphorylated form of ARNTL.<ref>PMID:10428031</ref> <ref>PMID:16628007</ref> <ref>PMID:16478995</ref>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
	== Publication Abstract from PubMed ==		== Publication Abstract from PubMed ==
Line 27:		Line 27:
	</StructureSection>		</StructureSection>
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: ~~Lk3 transgenic mice~~]]	+	[[Category: Mus musculus]]
-	[[Category: Aikawa, Y]]	+	[[Category: Aikawa Y]]
-	[[Category: Hirota, T]]	+	[[Category: Hirota T]]
-	[[Category: Miller, S]]	+	[[Category: Miller S]]
-	~~[[Category: Circadian clock]]~~	+
-	~~[[Category: Circadian clock protein]]~~	+
-	~~[[Category: Cry]]~~	+
-	~~[[Category: Cryptochrome]]~~	+
-	~~[[Category: Kl201~~]]	+

OCA at 07:22, 30 September 2020

OCA — Wed, 30 Sep 2020 07:22:03 GMT

←Older revision		Revision as of 07:22, 30 September 2020
Line 19:		Line 19:
	</div>		</div>
	<div class="pdbe-citations 6lue" style="background-color:#fffaf0;"></div>		<div class="pdbe-citations 6lue" style="background-color:#fffaf0;"></div>
		+
		+	==See Also==
		+	*[[Cryptochrome 3D structures\|Cryptochrome 3D structures]]
	== References ==		== References ==
	<references/>		<references/>

OCA at 06:50, 25 June 2020

OCA — Thu, 25 Jun 2020 06:50:37 GMT

←Older revision		Revision as of 06:50, 25 June 2020
Line 1:		Line 1:

	==Crystal structure of mouse Cryptochrome 1 in complex with compound KL201==		==Crystal structure of mouse Cryptochrome 1 in complex with compound KL201==
-	<StructureSection load='6lue' size='340' side='right'caption='[[6lue]]' scene=''>	+	<StructureSection load='6lue' size='340' side='right'caption='[[6lue]], [[Resolution\|resolution]] 2.10Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6LUE OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=6LUE FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[6lue]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Lk3_transgenic_mice Lk3 transgenic mice]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6LUE OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=6LUE FirstGlance]. <br>
-	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=6lue FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6lue OCA], [http://pdbe.org/6lue PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6lue RCSB], [http://www.ebi.ac.uk/pdbsum/6lue PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6lue ProSAT]</span></td></tr>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=EUL:2-bromanyl-N-(5,6,7,8-tetrahydro-[1]benzothiolo[2,3-d]pyrimidin-4-yl)benzamide'>EUL</scene></td></tr>
		+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">Cry1 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=10090 LK3 transgenic mice])</td></tr>
		+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=6lue FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6lue OCA], [http://pdbe.org/6lue PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6lue RCSB], [http://www.ebi.ac.uk/pdbsum/6lue PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6lue ProSAT]</span></td></tr>
	</table>		</table>
		+	== Function ==
		+	[[http://www.uniprot.org/uniprot/CRY1_MOUSE CRY1_MOUSE]] Blue light-dependent regulator of the circadian feedback loop. Inhibits CLOCK\|NPAS2-ARNTL E box-mediated transcription. Acts, in conjunction with CRY2, in maintaining period length and circadian rhythmicity. Has no photolyase activity. Capable of translocating circadian clock core proteins such as PER proteins to the nucleus. May inhibit CLOCK\|NPAS2-ARNTL transcriptional activity through stabilizing the unphosphorylated form of ARNTL.<ref>PMID:10428031</ref> <ref>PMID:16628007</ref> <ref>PMID:16478995</ref>
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	Cryptochrome 1 (CRY1) and CRY2 are core regulators of the circadian clock, and the development of isoform-selective modulators is important for the elucidation of their redundant and distinct functions. Here, we report the identification and functional characterization of a small-molecule modulator of the mammalian circadian clock that selectively controls CRY1. Cell-based circadian chemical screening identified a thienopyrimidine derivative KL201 that lengthened the period of circadian rhythms in cells and tissues. Functional assays revealed stabilization of CRY1 but not CRY2 by KL201. A structure-activity relationship study of KL201 derivatives in combination with X-ray crystallography of the CRY1-KL201 complex uncovered critical sites and interactions required for CRY1 regulation. KL201 bound to CRY1 in overlap with FBXL3, a subunit of ubiquitin ligase complex, and the effect of KL201 was blunted by knockdown of FBXL3. KL201 will facilitate isoform-selective regulation of CRY1 to accelerate chronobiology research and therapeutics against clock-related diseases.
		+
		+	An Isoform-Selective Modulator of Cryptochrome 1 Regulates Circadian Rhythms in Mammals.,Miller S, Aikawa Y, Sugiyama A, Nagai Y, Hara A, Oshima T, Amaike K, Kay SA, Itami K, Hirota T Cell Chem Biol. 2020 Jun 1. pii: S2451-9456(20)30185-9. doi:, 10.1016/j.chembiol.2020.05.008. PMID:32502390<ref>PMID:32502390</ref>
		+
		+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
		+	</div>
		+	<div class="pdbe-citations 6lue" style="background-color:#fffaf0;"></div>
		+	== References ==
		+	<references/>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: Aikawa Y]]	+	[[Category: Lk3 transgenic mice]]
-	[[Category: Hirota T]]	+	[[Category: Aikawa, Y]]
-	[[Category: Miller S]]	+	[[Category: Hirota, T]]
		+	[[Category: Miller, S]]
		+	[[Category: Circadian clock]]
		+	[[Category: Circadian clock protein]]
		+	[[Category: Cry]]
		+	[[Category: Cryptochrome]]
		+	[[Category: Kl201]]

OCA at 06:23, 10 June 2020

OCA — Wed, 10 Jun 2020 06:23:28 GMT

←Older revision		Revision as of 06:23, 10 June 2020
Line 1:		Line 1:
-	'''Unreleased structure'''

-	~~The entry~~ 6lue is ~~ON HOLD until Paper Publication~~	+	==Crystal structure of mouse Cryptochrome 1 in complex with compound KL201==
-		+	<StructureSection load='6lue' size='340' side='right'caption='[[6lue]]' scene=''>
-	~~Authors~~:	+	== Structural highlights ==
-		+	<table><tr><td colspan='2'>Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6LUE OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=6LUE FirstGlance]. <br>
-	~~Description~~:	+	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=6lue FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6lue OCA], [http://pdbe.org/6lue PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6lue RCSB], [http://www.ebi.ac.uk/pdbsum/6lue PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6lue ProSAT]</span></td></tr>
-	[[Category: ~~Unreleased Structures~~]]	+	</table>
		+	__TOC__
		+	</StructureSection>
		+	[[Category: Large Structures]]
		+	[[Category: Aikawa Y]]
		+	[[Category: Hirota T]]
		+	[[Category: Miller S]]

OCA at 07:58, 26 February 2020

OCA — Wed, 26 Feb 2020 07:58:19 GMT

←Older revision		Revision as of 07:58, 26 February 2020
Line 1:		Line 1:
	'''Unreleased structure'''		'''Unreleased structure'''

-	The entry 6lue is ON HOLD	+	The entry 6lue is ON HOLD until Paper Publication

	Authors:		Authors:

OCA: Protected "6lue" [edit=sysop:move=sysop]

OCA — Wed, 05 Feb 2020 06:06:16 GMT

Protected "6lue" [edit=sysop:move=sysop]

←Older revision

Revision as of 06:06, 5 February 2020

OCA: New page: '''Unreleased structure''' The entry 6lue is ON HOLD Authors: Description: Category: Unreleased Structures

OCA — Wed, 05 Feb 2020 06:06:15 GMT

New page: '''Unreleased structure''' The entry 6lue is ON HOLD Authors: Description: Category: Unreleased Structures

New page

'''Unreleased structure'''

The entry 6lue is ON HOLD

Authors:

Description:
[[Category: Unreleased Structures]]