6m8v - Revision history

OCA at 06:26, 11 October 2023

OCA — Wed, 11 Oct 2023 06:26:29 GMT

←Older revision		Revision as of 06:26, 11 October 2023
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	<StructureSection load='6m8v' size='340' side='right'caption='[[6m8v]], [[Resolution\|resolution]] 2.22Å' scene=''>		<StructureSection load='6m8v' size='340' side='right'caption='[[6m8v]], [[Resolution\|resolution]] 2.22Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[6m8v]] is a 1 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6M8V OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=6M8V FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[6m8v]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Methanocaldococcus_jannaschii_DSM_2661 Methanocaldococcus jannaschii DSM 2661]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6M8V OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=6M8V FirstGlance]. <br>
-	</td></tr><tr id='~~ligand~~'><td class="sblockLbl"><b>[[~~Ligand~~\|~~Ligands~~:]]</b></td><td class="sblockDat"~~><scene name~~=~~'pdbligand=FMN:FLAVIN+MONONUCLEOTIDE'>FMN</scene~~>, ~~<scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene>~~</td></tr>	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 2.221Å</td></tr>
-	<tr id='~~related~~'><td class="sblockLbl"><b>[[~~Related_structure~~\|~~Related~~:]]</b></td><td class="sblockDat">~~[[6m8t\|6m8t]], [[6m8u\|6m8u]]~~<~~/td~~></tr>	+	<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=FMN:FLAVIN+MONONUCLEOTIDE'>FMN</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene></td></tr>
-	<~~tr id~~='~~activity'><td class~~=~~"sblockLbl"><b>Activity~~:~~</b~~></td><~~td class~~=~~"sblockDat"><span class~~=~~'plainlinks~~'>~~[http://en.wikipedia.org/wiki/Flavin_prenyltransferase Flavin prenyltransferase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.5.1.129 2.5.1.129]~~ </~~span~~></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=6m8v FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6m8v OCA], [https://pdbe.org/6m8v PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=6m8v RCSB], [https://www.ebi.ac.uk/pdbsum/6m8v PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=6m8v ProSAT]</span></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=6m8v FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6m8v OCA], [~~http~~://pdbe.org/6m8v PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=6m8v RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/6m8v PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=6m8v ProSAT]</span></td></tr>	+
	</table>		</table>
	== Function ==		== Function ==
-	[~~[http~~://www.uniprot.org/uniprot/UBIX_METJA UBIX_METJA]] Flavin prenyltransferase that catalyzes the synthesis of the prenylated FMN cofactor (prenyl-FMN) for 4-hydroxy-3-polyprenylbenzoic acid decarboxylase UbiD. The prenyltransferase is metal-independent and links a dimethylallyl moiety from dimethylallyl monophosphate (DMAP) to the flavin N5 and C6 atoms of FMN.	+	[https://www.uniprot.org/uniprot/UBIX_METJA UBIX_METJA] Flavin prenyltransferase that catalyzes the synthesis of the prenylated FMN cofactor (prenyl-FMN) for 4-hydroxy-3-polyprenylbenzoic acid decarboxylase UbiD. The prenyltransferase is metal-independent and links a dimethylallyl moiety from dimethylallyl monophosphate (DMAP) to the flavin N5 and C6 atoms of FMN.
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: Flavin prenyltransferase]]
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: Khusnutdinova, A]]	+	[[Category: Methanocaldococcus jannaschii DSM 2661]]
-	[[Category: Savchenko, A]]	+	[[Category: Khusnutdinova A]]
-	[[Category: Skarina, T]]	+	[[Category: Savchenko A]]
-	[[Category: Stogios~~, P J~~]]	+	[[Category: Skarina T]]
-	[[Category: Wawrzak, Z]]	+	[[Category: Stogios PJ]]
-	[[Category: Yakunin~~, A F]]~~	+	[[Category: Wawrzak Z]]
-	~~[[Category: Fmn binding]]~~	+	[[Category: Yakunin AF]]
-	~~[[Category: Lyase]]~~	+
-	~~[[Category: Prenyl transferase]]~~	+
-	~~[[Category: Ubix~~]]	+

OCA at 09:16, 26 February 2020

OCA — Wed, 26 Feb 2020 09:16:19 GMT

←Older revision		Revision as of 09:16, 26 February 2020
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-	'''Unreleased structure'''

-	~~The entry~~ 6m8v is ~~ON HOLD until Feb 23 2021~~	+	==Crystal structure of UbiX-like FMN prenyltransferase MJ0101 from Methanocaldococcus jannaschii, FMN complex==
-		+	<StructureSection load='6m8v' size='340' side='right'caption='[[6m8v]], [[Resolution\|resolution]] 2.22Å' scene=''>
-	~~Authors~~:	+	== Structural highlights ==
-		+	<table><tr><td colspan='2'>[[6m8v]] is a 1 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6M8V OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6M8V FirstGlance]. <br>
-	~~Description~~:	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=FMN:FLAVIN+MONONUCLEOTIDE'>FMN</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene></td></tr>
-	[[Category: ~~Unreleased~~ Structures]]	+	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[6m8t\|6m8t]], [[6m8u\|6m8u]]</td></tr>
		+	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Flavin_prenyltransferase Flavin prenyltransferase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.5.1.129 2.5.1.129] </span></td></tr>
		+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6m8v FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6m8v OCA], [http://pdbe.org/6m8v PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6m8v RCSB], [http://www.ebi.ac.uk/pdbsum/6m8v PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6m8v ProSAT]</span></td></tr>
		+	</table>
		+	== Function ==
		+	[[http://www.uniprot.org/uniprot/UBIX_METJA UBIX_METJA]] Flavin prenyltransferase that catalyzes the synthesis of the prenylated FMN cofactor (prenyl-FMN) for 4-hydroxy-3-polyprenylbenzoic acid decarboxylase UbiD. The prenyltransferase is metal-independent and links a dimethylallyl moiety from dimethylallyl monophosphate (DMAP) to the flavin N5 and C6 atoms of FMN.
		+	__TOC__
		+	</StructureSection>
		+	[[Category: Flavin prenyltransferase]]
		+	[[Category: Large Structures]]
		+	[[Category: Khusnutdinova, A]]
		+	[[Category: Savchenko, A]]
		+	[[Category: Skarina, T]]
		+	[[Category: Stogios, P J]]
		+	[[Category: Wawrzak, Z]]
		+	[[Category: Yakunin, A F]]
		+	[[Category: Fmn binding]]
		+	[[Category: Lyase]]
		+	[[Category: Prenyl transferase]]
		+	[[Category: Ubix]]

OCA at 07:23, 30 October 2019

OCA — Wed, 30 Oct 2019 07:23:03 GMT

←Older revision		Revision as of 07:23, 30 October 2019
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	'''Unreleased structure'''		'''Unreleased structure'''

-	The entry 6m8v is ON HOLD until ~~Nov~~ 23 ~~2020~~	+	The entry 6m8v is ON HOLD until Feb 23 2021

	Authors:		Authors:

OCA at 04:09, 3 July 2019

OCA — Wed, 03 Jul 2019 04:09:51 GMT

←Older revision		Revision as of 04:09, 3 July 2019
Line 1:		Line 1:
	'''Unreleased structure'''		'''Unreleased structure'''

-	The entry 6m8v is ON HOLD until ~~Paper Publication~~	+	The entry 6m8v is ON HOLD until Nov 23 2020

	Authors:		Authors:

OCA at 08:50, 5 September 2018

OCA — Wed, 05 Sep 2018 08:50:27 GMT

←Older revision		Revision as of 08:50, 5 September 2018
Line 1:		Line 1:
	'''Unreleased structure'''		'''Unreleased structure'''

-	The entry 6m8v is ON HOLD	+	The entry 6m8v is ON HOLD until Paper Publication

	Authors:		Authors:

OCA: Protected "6m8v" [edit=sysop:move=sysop]

OCA — Wed, 29 Aug 2018 06:08:09 GMT

Protected "6m8v" [edit=sysop:move=sysop]

←Older revision

Revision as of 06:08, 29 August 2018

OCA: New page: '''Unreleased structure''' The entry 6m8v is ON HOLD Authors: Description: Category: Unreleased Structures

OCA — Wed, 29 Aug 2018 06:08:08 GMT

New page: '''Unreleased structure''' The entry 6m8v is ON HOLD Authors: Description: Category: Unreleased Structures

New page

'''Unreleased structure'''

The entry 6m8v is ON HOLD

Authors:

Description:
[[Category: Unreleased Structures]]