6m9z - Revision history

OCA at 06:27, 11 October 2023

OCA — Wed, 11 Oct 2023 06:27:02 GMT

←Older revision		Revision as of 06:27, 11 October 2023
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	<StructureSection load='6m9z' size='340' side='right'caption='[[6m9z]], [[Resolution\|resolution]] 1.20Å' scene=''>		<StructureSection load='6m9z' size='340' side='right'caption='[[6m9z]], [[Resolution\|resolution]] 1.20Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[6m9z]] is a 2 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/~~Amphioxus Amphioxus~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6M9Z OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=6M9Z FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[6m9z]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Branchiostoma_floridae Branchiostoma floridae]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6M9Z OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=6M9Z FirstGlance]. <br>
-	</td></tr><tr id='~~NonStdRes~~'><td class="sblockLbl"><b>[[~~Non~~-~~Standard_Residue~~\|~~NonStd Res~~:]]</b></td><td class="sblockDat"><scene name='pdbligand=CR2:{(4Z)-2-(AMINOMETHYL)-4-[(4-HYDROXYPHENYL)METHYLIDENE]-5-OXO-4,5-DIHYDRO-1H-IMIDAZOL-1-YL}ACETIC+ACID'>CR2</scene>~~</td></tr>~~	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 1.2Å</td></tr>
-	~~<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">BRAFLDRAFT_75521 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=7739 Amphioxus])~~</td></tr>	+	<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CR2:{(4Z)-2-(AMINOMETHYL)-4-[(4-HYDROXYPHENYL)METHYLIDENE]-5-OXO-4,5-DIHYDRO-1H-IMIDAZOL-1-YL}ACETIC+ACID'>CR2</scene></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=6m9z FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6m9z OCA], [~~http~~://pdbe.org/6m9z PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=6m9z RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/6m9z PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=6m9z ProSAT]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=6m9z FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6m9z OCA], [https://pdbe.org/6m9z PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=6m9z RCSB], [https://www.ebi.ac.uk/pdbsum/6m9z PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=6m9z ProSAT]</span></td></tr>
	</table>		</table>
		+	== Function ==
		+	[https://www.uniprot.org/uniprot/C3YRA1_BRAFL C3YRA1_BRAFL]
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
	== Publication Abstract from PubMed ==		== Publication Abstract from PubMed ==
Line 17:		Line 19:
	</div>		</div>
	<div class="pdbe-citations 6m9z" style="background-color:#fffaf0;"></div>		<div class="pdbe-citations 6m9z" style="background-color:#fffaf0;"></div>
		+
		+	==See Also==
		+	*[[Green Fluorescent Protein 3D structures\|Green Fluorescent Protein 3D structures]]
	== References ==		== References ==
	<references/>		<references/>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: ~~Amphioxus~~]]	+	[[Category: Branchiostoma floridae]]
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: Muslinkina, L]]	+	[[Category: Muslinkina L]]
-	[[Category: Pletnev, S]]	+	[[Category: Pletnev S]]
-	[[Category: Pletnev, V]]	+	[[Category: Pletnev V]]
-	[[Category: Pletneva, N]]	+	[[Category: Pletneva N]]
-	~~[[Category: Fluorescent protein]]~~	+
-	~~[[Category: Fluorescent protein branchiostoma floridae gly-tyr-gly chromophore~~]]	+

OCA at 07:00, 17 April 2019

OCA — Wed, 17 Apr 2019 07:00:36 GMT

←Older revision		Revision as of 07:00, 17 April 2019
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	<StructureSection load='6m9z' size='340' side='right'caption='[[6m9z]], [[Resolution\|resolution]] 1.20Å' scene=''>		<StructureSection load='6m9z' size='340' side='right'caption='[[6m9z]], [[Resolution\|resolution]] 1.20Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[6m9z]] is a 2 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6M9Z OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6M9Z FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[6m9z]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Amphioxus Amphioxus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6M9Z OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6M9Z FirstGlance]. <br>
	</td></tr><tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=CR2:{(4Z)-2-(AMINOMETHYL)-4-[(4-HYDROXYPHENYL)METHYLIDENE]-5-OXO-4,5-DIHYDRO-1H-IMIDAZOL-1-YL}ACETIC+ACID'>CR2</scene></td></tr>		</td></tr><tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=CR2:{(4Z)-2-(AMINOMETHYL)-4-[(4-HYDROXYPHENYL)METHYLIDENE]-5-OXO-4,5-DIHYDRO-1H-IMIDAZOL-1-YL}ACETIC+ACID'>CR2</scene></td></tr>
		+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">BRAFLDRAFT_75521 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=7739 Amphioxus])</td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6m9z FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6m9z OCA], [http://pdbe.org/6m9z PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6m9z RCSB], [http://www.ebi.ac.uk/pdbsum/6m9z PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6m9z ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6m9z FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6m9z OCA], [http://pdbe.org/6m9z PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6m9z RCSB], [http://www.ebi.ac.uk/pdbsum/6m9z PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6m9z ProSAT]</span></td></tr>
	</table>		</table>
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	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
		+	[[Category: Amphioxus]]
	[[Category: Large Structures]]		[[Category: Large Structures]]
	[[Category: Muslinkina, L]]		[[Category: Muslinkina, L]]

OCA at 07:06, 3 April 2019

OCA — Wed, 03 Apr 2019 07:06:07 GMT

←Older revision		Revision as of 07:06, 3 April 2019
Line 1:		Line 1:
-	'''Unreleased structure'''

-	~~The entry~~ 6m9z is ~~ON HOLD~~	+	==X-ray Structure of Branchiostoma floridae fluorescent protein lanFP6G==
		+	<StructureSection load='6m9z' size='340' side='right'caption='[[6m9z]], [[Resolution\|resolution]] 1.20Å' scene=''>
		+	== Structural highlights ==
		+	<table><tr><td colspan='2'>[[6m9z]] is a 2 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6M9Z OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6M9Z FirstGlance]. <br>
		+	</td></tr><tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=CR2:{(4Z)-2-(AMINOMETHYL)-4-[(4-HYDROXYPHENYL)METHYLIDENE]-5-OXO-4,5-DIHYDRO-1H-IMIDAZOL-1-YL}ACETIC+ACID'>CR2</scene></td></tr>
		+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6m9z FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6m9z OCA], [http://pdbe.org/6m9z PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6m9z RCSB], [http://www.ebi.ac.uk/pdbsum/6m9z PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6m9z ProSAT]</span></td></tr>
		+	</table>
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	GFP-like proteins from lancelets (lanFPs) is a new and least studied group that already generated several outstanding biomarkers (mNeonGreen is the brightest FP to date) and has some unique features. Here, we report the study of four homologous lanFPs with GYG and GYA chromophores. Until recently, it was accepted that the third chromophore-forming residue in GFP-like proteins should be glycine and efforts to replace it were in vain. Now, we have the first structure of a fluorescent protein with a successfully matured chromophore that has alanine as the third chromophore-forming residue. Consideration of the protein structures revealed two alternative routes of posttranslational transformation, resulting in either chromophore maturation or hydrolysis of GYG/GYA tripeptide. Both transformations are catalyzed by the same set of catalytic residues, Arg88 and Glu35-Wat-Glu211 cluster, whereas the residues in positions 62 and 102 shift the equilibrium between chromophore maturation and hydrolysis.

-	~~Authors: Muslinkina~~, L., ~~Pletneva~~, N., Pletnev, V., ~~Pletnev~~, S.	+	Structural Factors Enabling Successful GFP-Like Proteins with Alanine as the Third Chromophore-Forming Residue.,Muslinkina L, Roldan-Salgado A, Gaytan P, Juarez-Gonzalez VR, Rudino E, Pletneva N, Pletnev V, Dauter Z, Pletnev S J Mol Biol. 2019 Feb 21. pii: S0022-2836(18)31051-9. doi:, 10.1016/j.jmb.2019.02.013. PMID:30797856<ref>PMID:30797856</ref>

-	~~Description: X-ray Structure~~ of ~~Branchiostoma floridae fluorescent protein lanFP6G~~	+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
-	[[Category: ~~Unreleased~~ Structures]]	+	</div>
		+	<div class="pdbe-citations 6m9z" style="background-color:#fffaf0;"></div>
		+	== References ==
		+	<references/>
		+	__TOC__
		+	</StructureSection>
		+	[[Category: Large Structures]]
		+	[[Category: Muslinkina, L]]
	[[Category: Pletnev, S]]		[[Category: Pletnev, S]]
	[[Category: Pletnev, V]]		[[Category: Pletnev, V]]
	[[Category: Pletneva, N]]		[[Category: Pletneva, N]]
-	[[Category: ~~Muslinkina, L~~]]	+	[[Category: Fluorescent protein]]
		+	[[Category: Fluorescent protein branchiostoma floridae gly-tyr-gly chromophore]]

OCA at 05:25, 31 October 2018

OCA — Wed, 31 Oct 2018 05:25:36 GMT

←Older revision		Revision as of 05:25, 31 October 2018
Line 1:		Line 1:
	'''Unreleased structure'''		'''Unreleased structure'''

-	The entry 6m9z is ON HOLD ~~until Paper Publication~~	+	The entry 6m9z is ON HOLD

	Authors: Muslinkina, L., Pletneva, N., Pletnev, V., Pletnev, S.		Authors: Muslinkina, L., Pletneva, N., Pletnev, V., Pletnev, S.

OCA at 18:22, 19 September 2018

OCA — Wed, 19 Sep 2018 18:22:09 GMT

←Older revision		Revision as of 18:22, 19 September 2018
Line 1:		Line 1:
	'''Unreleased structure'''		'''Unreleased structure'''

-	The entry 6m9z is ON HOLD	+	The entry 6m9z is ON HOLD until Paper Publication

	Authors: Muslinkina, L., Pletneva, N., Pletnev, V., Pletnev, S.		Authors: Muslinkina, L., Pletneva, N., Pletnev, V., Pletnev, S.

OCA at 06:11, 12 September 2018

OCA — Wed, 12 Sep 2018 06:11:28 GMT

←Older revision		Revision as of 06:11, 12 September 2018
Line 1:		Line 1:
	'''Unreleased structure'''		'''Unreleased structure'''

-	The entry 6m9z is ON HOLD ~~until sometime in the future~~	+	The entry 6m9z is ON HOLD

	Authors: Muslinkina, L., Pletneva, N., Pletnev, V., Pletnev, S.		Authors: Muslinkina, L., Pletneva, N., Pletnev, V., Pletnev, S.
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	Description: X-ray Structure of Branchiostoma floridae fluorescent protein lanFP6G		Description: X-ray Structure of Branchiostoma floridae fluorescent protein lanFP6G
	[[Category: Unreleased Structures]]		[[Category: Unreleased Structures]]
		+	[[Category: Pletnev, S]]
	[[Category: Pletnev, V]]		[[Category: Pletnev, V]]
	[[Category: Pletneva, N]]		[[Category: Pletneva, N]]
	[[Category: Muslinkina, L]]		[[Category: Muslinkina, L]]
-	[[Category: Pletnev, S]]

OCA: Protected "6m9z" [edit=sysop:move=sysop]

OCA — Wed, 05 Sep 2018 08:52:06 GMT

Protected "6m9z" [edit=sysop:move=sysop]

←Older revision

Revision as of 08:52, 5 September 2018

OCA: New page: '''Unreleased structure''' The entry 6m9z is ON HOLD until sometime in the future Authors: Muslinkina, L., Pletneva, N., Pletnev, V., Pletnev, S. Description: X-ray Structure of Branch...

OCA — Wed, 05 Sep 2018 08:52:05 GMT

New page: '''Unreleased structure''' The entry 6m9z is ON HOLD until sometime in the future Authors: Muslinkina, L., Pletneva, N., Pletnev, V., Pletnev, S. Description: X-ray Structure of Branch...

New page

'''Unreleased structure'''

The entry 6m9z is ON HOLD until sometime in the future

Authors: Muslinkina, L., Pletneva, N., Pletnev, V., Pletnev, S.

Description: X-ray Structure of Branchiostoma floridae fluorescent protein lanFP6G
[[Category: Unreleased Structures]]
[[Category: Pletnev, V]]
[[Category: Pletneva, N]]
[[Category: Muslinkina, L]]
[[Category: Pletnev, S]]