6n1z - Revision history

OCA at 14:46, 13 March 2024

OCA — Wed, 13 Mar 2024 14:46:12 GMT

←Older revision		Revision as of 14:46, 13 March 2024
Line 3:		Line 3:
	<StructureSection load='6n1z' size='340' side='right'caption='[[6n1z]], [[Resolution\|resolution]] 2.70Å' scene=''>		<StructureSection load='6n1z' size='340' side='right'caption='[[6n1z]], [[Resolution\|resolution]] 2.70Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[6n1z]] is a 6 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/~~African_clawed_frog African clawed frog~~] and [~~http~~://en.wikipedia.org/wiki/~~Human Human~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6N1Z OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=6N1Z FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[6n1z]] is a 6 chain structure with sequence from [https://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens] and [https://en.wikipedia.org/wiki/Xenopus_laevis Xenopus laevis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6N1Z OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=6N1Z FirstGlance]. <br>
-	</td></tr><tr id='~~gene~~'><td class="sblockLbl"><b>[[~~Gene~~\|~~Gene~~:]]</b></td><td class="sblockDat">~~IPO9~~, ~~IMP9, KIAA1192, RANBP9, HSPC273 (~~[~~http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=9606 HUMAN~~]~~), hist1h2aj, LOC494591, XELAEV_18003602mg ([http://www~~.~~ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info~~&~~srchmode=5&id=8355 African clawed frog])~~</td></tr>	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 2.7Å</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=6n1z FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6n1z OCA], [~~http~~://pdbe.org/6n1z PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=6n1z RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/6n1z PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=6n1z ProSAT]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=6n1z FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6n1z OCA], [https://pdbe.org/6n1z PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=6n1z RCSB], [https://www.ebi.ac.uk/pdbsum/6n1z PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=6n1z ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
-	[~~[http~~://www.uniprot.org/uniprot/IPO9_HUMAN IPO9_HUMAN]] Functions in nuclear protein import as nuclear transport receptor (PubMed:11823430). Serves as receptor for nuclear localization signals (NLS) in cargo substrates (PubMed:11823430). Is thought to mediate docking of the importin/substrate complex to the nuclear pore complex (NPC) through binding to nucleoporin and the complex is subsequently translocated through the pore by an energy requiring, Ran-dependent mechanism (PubMed:11823430). At the nucleoplasmic side of the NPC, Ran binds to the importin, the importin/substrate complex dissociates and importin is re-exported from the nucleus to the cytoplasm where GTP hydrolysis releases Ran (PubMed:11823430). The directionality of nuclear import is thought to be conferred by an asymmetric distribution of the GTP- and GDP-bound forms of Ran between the cytoplasm and nucleus (PubMed:11823430). Mediates the nuclear import of RPS7, RPL18A, RPL6, histone H2A, histone H2B and histone (PubMed:11823430). Prevents the cytoplasmic aggregation of RPS7 and RPL18A by shielding exposed basic domains (PubMed:11823430). Mediates the nuclear import of actin (By similarity).[UniProtKB:Q91YE6]<ref>PMID:11823430</ref> [[http://www.uniprot.org/uniprot/H2B11_XENLA H2B11_XENLA]] Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling.	+	[https://www.uniprot.org/uniprot/H2A1_XENLA H2A1_XENLA] Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling.
-	~~<div style="background-color:#fffaf0;">~~	+
-	~~== Publication Abstract from PubMed ==~~	+
-	We report the crystal structure of nuclear import receptor Importin-9 bound to its cargo, the histones H2A-H2B. Importin-9 wraps around the core, globular region of H2A-H2B to form an extensive interface. The nature of this interface coupled with quantitative analysis of deletion mutants of H2A-H2B suggest that the NLS-like sequences in the H2A-H2B tails play a minor role in import. Importin-9H2A-H2B is reminiscent of interactions between histones and histone chaperones in that it precludes H2A-H2B interactions with DNA and H3-H4 as seen in the nucleosome. Like many histone chaperones, which prevent inappropriate non-nucleosomal interactions, Importin-9 also sequesters H2A-H2B from DNA. Importin-9 appears to act as a storage chaperone for H2A-H2B while escorting it to the nucleus. Surprisingly, RanGTP does not dissociate Importin-9H2A-H2B but assembles into a RanGTPImportin-9H2A-H2B complex. The presence of Ran in the complex, however, modulates Imp9-H2A-H2B interactions to facilitate its dissociation by DNA and assembly into a nucleosome.	+
-		+
-	Importin-9 wraps around the H2A-H2B core to act as nuclear importer and histone chaperone.,Padavannil A, Sarkar P, Kim SJ, Cagatay T, Jiou J, Brautigam CA, Tomchick DR, Sali A, D'Arcy S, Chook YM Elife. 2019 Mar 11;8. pii: 43630. doi: 10.7554/eLife.43630. PMID:30855230<ref>PMID:30855230</ref>	+
-		+
-	~~From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>~~	+
-	~~</div>~~	+
-	~~<div class="pdbe-citations 6n1z" style="background-color:#fffaf0;"></div>~~	+

	==See Also==		==See Also==
	*[[Histone 3D structures\|Histone 3D structures]]		*[[Histone 3D structures\|Histone 3D structures]]
	*[[Importin 3D structures\|Importin 3D structures]]		*[[Importin 3D structures\|Importin 3D structures]]
-	== References ==
-	<references/>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: ~~African clawed frog]]~~	+	[[Category: Homo sapiens]]
-	~~[[Category: Human~~]]	+
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: ~~Chook, Y M~~]]	+	[[Category: Xenopus laevis]]
-	[[Category: ~~Padavannil, A~~]]	+	[[Category: Chook YM]]
-	[[Category: ~~Tomchick, D R~~]]	+	[[Category: Padavannil A]]
-	[[Category: ~~H2a]]~~	+	[[Category: Tomchick DR]]
-	~~[[Category: H2b]]~~	+
-	~~[[Category: Histone]]~~	+
-	~~[[Category: Histone chaperone]]~~	+
-	~~[[Category: Importin-9]]~~	+
-	~~[[Category: Karyopherin]]~~	+
-	~~[[Category: Nl]]~~	+
-	~~[[Category: Nuclear pore complex]]~~	+
-	~~[[Category: Nucleosome]]~~	+
-	~~[[Category: Ran gtpase]]~~	+
-	~~[[Category: Transport protein~~]]	+

OCA at 11:33, 1 January 2020

OCA — Wed, 01 Jan 2020 11:33:38 GMT

←Older revision		Revision as of 11:33, 1 January 2020
Line 18:		Line 18:
	</div>		</div>
	<div class="pdbe-citations 6n1z" style="background-color:#fffaf0;"></div>		<div class="pdbe-citations 6n1z" style="background-color:#fffaf0;"></div>
		+
		+	==See Also==
		+	*[[Histone 3D structures\|Histone 3D structures]]
		+	*[[Importin 3D structures\|Importin 3D structures]]
	== References ==		== References ==
	<references/>		<references/>

OCA at 07:08, 27 March 2019

OCA — Wed, 27 Mar 2019 07:08:53 GMT

←Older revision		Revision as of 07:08, 27 March 2019
Line 3:		Line 3:
	<StructureSection load='6n1z' size='340' side='right'caption='[[6n1z]], [[Resolution\|resolution]] 2.70Å' scene=''>		<StructureSection load='6n1z' size='340' side='right'caption='[[6n1z]], [[Resolution\|resolution]] 2.70Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[6n1z]] is a 6 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6N1Z OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6N1Z FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[6n1z]] is a 6 chain structure with sequence from [http://en.wikipedia.org/wiki/African_clawed_frog African clawed frog] and [http://en.wikipedia.org/wiki/Human Human]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6N1Z OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6N1Z FirstGlance]. <br>
-	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6n1z FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6n1z OCA], [http://pdbe.org/6n1z PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6n1z RCSB], [http://www.ebi.ac.uk/pdbsum/6n1z PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6n1z ProSAT]</span></td></tr>	+	</td></tr><tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">IPO9, IMP9, KIAA1192, RANBP9, HSPC273 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=9606 HUMAN]), hist1h2aj, LOC494591, XELAEV_18003602mg ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=8355 African clawed frog])</td></tr>
		+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6n1z FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6n1z OCA], [http://pdbe.org/6n1z PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6n1z RCSB], [http://www.ebi.ac.uk/pdbsum/6n1z PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6n1z ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
	[[http://www.uniprot.org/uniprot/IPO9_HUMAN IPO9_HUMAN]] Functions in nuclear protein import as nuclear transport receptor (PubMed:11823430). Serves as receptor for nuclear localization signals (NLS) in cargo substrates (PubMed:11823430). Is thought to mediate docking of the importin/substrate complex to the nuclear pore complex (NPC) through binding to nucleoporin and the complex is subsequently translocated through the pore by an energy requiring, Ran-dependent mechanism (PubMed:11823430). At the nucleoplasmic side of the NPC, Ran binds to the importin, the importin/substrate complex dissociates and importin is re-exported from the nucleus to the cytoplasm where GTP hydrolysis releases Ran (PubMed:11823430). The directionality of nuclear import is thought to be conferred by an asymmetric distribution of the GTP- and GDP-bound forms of Ran between the cytoplasm and nucleus (PubMed:11823430). Mediates the nuclear import of RPS7, RPL18A, RPL6, histone H2A, histone H2B and histone (PubMed:11823430). Prevents the cytoplasmic aggregation of RPS7 and RPL18A by shielding exposed basic domains (PubMed:11823430). Mediates the nuclear import of actin (By similarity).[UniProtKB:Q91YE6]<ref>PMID:11823430</ref> [[http://www.uniprot.org/uniprot/H2B11_XENLA H2B11_XENLA]] Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling.		[[http://www.uniprot.org/uniprot/IPO9_HUMAN IPO9_HUMAN]] Functions in nuclear protein import as nuclear transport receptor (PubMed:11823430). Serves as receptor for nuclear localization signals (NLS) in cargo substrates (PubMed:11823430). Is thought to mediate docking of the importin/substrate complex to the nuclear pore complex (NPC) through binding to nucleoporin and the complex is subsequently translocated through the pore by an energy requiring, Ran-dependent mechanism (PubMed:11823430). At the nucleoplasmic side of the NPC, Ran binds to the importin, the importin/substrate complex dissociates and importin is re-exported from the nucleus to the cytoplasm where GTP hydrolysis releases Ran (PubMed:11823430). The directionality of nuclear import is thought to be conferred by an asymmetric distribution of the GTP- and GDP-bound forms of Ran between the cytoplasm and nucleus (PubMed:11823430). Mediates the nuclear import of RPS7, RPL18A, RPL6, histone H2A, histone H2B and histone (PubMed:11823430). Prevents the cytoplasmic aggregation of RPS7 and RPL18A by shielding exposed basic domains (PubMed:11823430). Mediates the nuclear import of actin (By similarity).[UniProtKB:Q91YE6]<ref>PMID:11823430</ref> [[http://www.uniprot.org/uniprot/H2B11_XENLA H2B11_XENLA]] Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling.
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	We report the crystal structure of nuclear import receptor Importin-9 bound to its cargo, the histones H2A-H2B. Importin-9 wraps around the core, globular region of H2A-H2B to form an extensive interface. The nature of this interface coupled with quantitative analysis of deletion mutants of H2A-H2B suggest that the NLS-like sequences in the H2A-H2B tails play a minor role in import. Importin-9H2A-H2B is reminiscent of interactions between histones and histone chaperones in that it precludes H2A-H2B interactions with DNA and H3-H4 as seen in the nucleosome. Like many histone chaperones, which prevent inappropriate non-nucleosomal interactions, Importin-9 also sequesters H2A-H2B from DNA. Importin-9 appears to act as a storage chaperone for H2A-H2B while escorting it to the nucleus. Surprisingly, RanGTP does not dissociate Importin-9H2A-H2B but assembles into a RanGTPImportin-9H2A-H2B complex. The presence of Ran in the complex, however, modulates Imp9-H2A-H2B interactions to facilitate its dissociation by DNA and assembly into a nucleosome.
		+
		+	Importin-9 wraps around the H2A-H2B core to act as nuclear importer and histone chaperone.,Padavannil A, Sarkar P, Kim SJ, Cagatay T, Jiou J, Brautigam CA, Tomchick DR, Sali A, D'Arcy S, Chook YM Elife. 2019 Mar 11;8. pii: 43630. doi: 10.7554/eLife.43630. PMID:30855230<ref>PMID:30855230</ref>
		+
		+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
		+	</div>
		+	<div class="pdbe-citations 6n1z" style="background-color:#fffaf0;"></div>
	== References ==		== References ==
	<references/>		<references/>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
		+	[[Category: African clawed frog]]
		+	[[Category: Human]]
	[[Category: Large Structures]]		[[Category: Large Structures]]
	[[Category: Chook, Y M]]		[[Category: Chook, Y M]]

OCA at 08:02, 20 March 2019

OCA — Wed, 20 Mar 2019 08:02:40 GMT

←Older revision		Revision as of 08:02, 20 March 2019
Line 1:		Line 1:
-	'''Unreleased structure'''

-	~~The entry~~ 6n1z ~~is ON HOLD until Paper Publication~~	+	==Importin-9 bound to H2A-H2B==
-		+	<StructureSection load='6n1z' size='340' side='right'caption='[[6n1z]], [[Resolution\|resolution]] 2.70Å' scene=''>
-	~~Authors~~: ~~Tomchick~~, D.R., ~~Chook~~, Y.M., ~~Padavannil~~, A.	+	== Structural highlights ==
-		+	<table><tr><td colspan='2'>[[6n1z]] is a 6 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6N1Z OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6N1Z FirstGlance]. <br>
-	~~Description~~: ~~Importin~~ cargo complex	+	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6n1z FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6n1z OCA], [http://pdbe.org/6n1z PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6n1z RCSB], [http://www.ebi.ac.uk/pdbsum/6n1z PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6n1z ProSAT]</span></td></tr>
-	[[Category: ~~Unreleased~~ Structures]]	+	</table>
		+	== Function ==
		+	[[http://www.uniprot.org/uniprot/IPO9_HUMAN IPO9_HUMAN]] Functions in nuclear protein import as nuclear transport receptor (PubMed:11823430). Serves as receptor for nuclear localization signals (NLS) in cargo substrates (PubMed:11823430). Is thought to mediate docking of the importin/substrate complex to the nuclear pore complex (NPC) through binding to nucleoporin and the complex is subsequently translocated through the pore by an energy requiring, Ran-dependent mechanism (PubMed:11823430). At the nucleoplasmic side of the NPC, Ran binds to the importin, the importin/substrate complex dissociates and importin is re-exported from the nucleus to the cytoplasm where GTP hydrolysis releases Ran (PubMed:11823430). The directionality of nuclear import is thought to be conferred by an asymmetric distribution of the GTP- and GDP-bound forms of Ran between the cytoplasm and nucleus (PubMed:11823430). Mediates the nuclear import of RPS7, RPL18A, RPL6, histone H2A, histone H2B and histone (PubMed:11823430). Prevents the cytoplasmic aggregation of RPS7 and RPL18A by shielding exposed basic domains (PubMed:11823430). Mediates the nuclear import of actin (By similarity).[UniProtKB:Q91YE6]<ref>PMID:11823430</ref> [[http://www.uniprot.org/uniprot/H2B11_XENLA H2B11_XENLA]] Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling.
		+	== References ==
		+	<references/>
		+	__TOC__
		+	</StructureSection>
		+	[[Category: Large Structures]]
		+	[[Category: Chook, Y M]]
	[[Category: Padavannil, A]]		[[Category: Padavannil, A]]
-	[[Category: Tomchick, D.R]]	+	[[Category: Tomchick, D R]]
-	[[Category: ~~Chook, Y.M~~]]	+	[[Category: H2a]]
		+	[[Category: H2b]]
		+	[[Category: Histone]]
		+	[[Category: Histone chaperone]]
		+	[[Category: Importin-9]]
		+	[[Category: Karyopherin]]
		+	[[Category: Nl]]
		+	[[Category: Nuclear pore complex]]
		+	[[Category: Nucleosome]]
		+	[[Category: Ran gtpase]]
		+	[[Category: Transport protein]]

OCA at 05:14, 5 December 2018

OCA — Wed, 05 Dec 2018 05:14:30 GMT

←Older revision		Revision as of 05:14, 5 December 2018
Line 1:		Line 1:
	'''Unreleased structure'''		'''Unreleased structure'''

-	The entry 6n1z is ON HOLD	+	The entry 6n1z is ON HOLD until Paper Publication

	Authors: Tomchick, D.R., Chook, Y.M., Padavannil, A.		Authors: Tomchick, D.R., Chook, Y.M., Padavannil, A.

OCA: Protected "6n1z" [edit=sysop:move=sysop]

OCA — Sun, 02 Dec 2018 19:08:18 GMT

Protected "6n1z" [edit=sysop:move=sysop]

←Older revision

Revision as of 19:08, 2 December 2018

OCA: New page: '''Unreleased structure''' The entry 6n1z is ON HOLD Authors: Tomchick, D.R., Chook, Y.M., Padavannil, A. Description: Importin cargo complex Category: Unreleased Structures [[Cate...

OCA — Sun, 02 Dec 2018 19:08:17 GMT

New page: '''Unreleased structure''' The entry 6n1z is ON HOLD Authors: Tomchick, D.R., Chook, Y.M., Padavannil, A. Description: Importin cargo complex Category: Unreleased Structures [[Cate...

New page

'''Unreleased structure'''

The entry 6n1z is ON HOLD

Authors: Tomchick, D.R., Chook, Y.M., Padavannil, A.

Description: Importin cargo complex
[[Category: Unreleased Structures]]
[[Category: Padavannil, A]]
[[Category: Tomchick, D.R]]
[[Category: Chook, Y.M]]