6nfr - Revision history

OCA at 06:52, 11 October 2023

OCA — Wed, 11 Oct 2023 06:52:51 GMT

←Older revision		Revision as of 06:52, 11 October 2023
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	<StructureSection load='6nfr' size='340' side='right'caption='[[6nfr]], [[Resolution\|resolution]] 1.00Å' scene=''>		<StructureSection load='6nfr' size='340' side='right'caption='[[6nfr]], [[Resolution\|resolution]] 1.00Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[6nfr]] is a 1 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/~~"bacillus_fluorescens_liquefaciens"_flugge_1886 "bacillus~~ fluorescens ~~liquefaciens" flugge 1886~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6NFR OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=6NFR FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[6nfr]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Pseudomonas_fluorescens Pseudomonas fluorescens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6NFR OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=6NFR FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 1Å</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=6nfr FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6nfr OCA], [~~http~~://pdbe.org/6nfr PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=6nfr RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/6nfr PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=6nfr ProSAT]</span></td></tr>	+	<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
		+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=6nfr FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6nfr OCA], [https://pdbe.org/6nfr PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=6nfr RCSB], [https://www.ebi.ac.uk/pdbsum/6nfr PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=6nfr ProSAT]</span></td></tr>
	</table>		</table>
		+	== Function ==
		+	[https://www.uniprot.org/uniprot/C3JYL7_PSEFS C3JYL7_PSEFS] Involved in copper resistance.[RuleBase:RU369037]
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
	== Publication Abstract from PubMed ==		== Publication Abstract from PubMed ==
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	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: Bacillus fluorescens liquefaciens flugge 1886]]
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: ~~Maher, M J~~]]	+	[[Category: Pseudomonas fluorescens]]
-	[[Category: ~~Copc]]~~	+	[[Category: Maher MJ]]
-	~~[[Category: Copper binding]]~~	+
-	~~[[Category: Metal binding protein]]~~	+
-	~~[[Category: Metallochaperone~~]]	+

OCA at 11:40, 1 January 2020

OCA — Wed, 01 Jan 2020 11:40:22 GMT

←Older revision		Revision as of 11:40, 1 January 2020
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	<StructureSection load='6nfr' size='340' side='right'caption='[[6nfr]], [[Resolution\|resolution]] 1.00Å' scene=''>		<StructureSection load='6nfr' size='340' side='right'caption='[[6nfr]], [[Resolution\|resolution]] 1.00Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[6nfr]] is a 1 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6NFR OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6NFR FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[6nfr]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/"bacillus_fluorescens_liquefaciens"_flugge_1886 "bacillus fluorescens liquefaciens" flugge 1886]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6NFR OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6NFR FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6nfr FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6nfr OCA], [http://pdbe.org/6nfr PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6nfr RCSB], [http://www.ebi.ac.uk/pdbsum/6nfr PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6nfr ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6nfr FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6nfr OCA], [http://pdbe.org/6nfr PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6nfr RCSB], [http://www.ebi.ac.uk/pdbsum/6nfr PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6nfr ProSAT]</span></td></tr>
Line 20:		Line 20:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
		+	[[Category: Bacillus fluorescens liquefaciens flugge 1886]]
	[[Category: Large Structures]]		[[Category: Large Structures]]
	[[Category: Maher, M J]]		[[Category: Maher, M J]]

OCA at 07:00, 24 April 2019

OCA — Wed, 24 Apr 2019 07:00:40 GMT

←Older revision		Revision as of 07:00, 24 April 2019
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-	'''Unreleased structure'''

-	~~The entry~~ 6nfr is ~~ON HOLD until Paper~~ Publication	+	==CopC from Pseudomonas fluorescens==
		+	<StructureSection load='6nfr' size='340' side='right'caption='[[6nfr]], [[Resolution\|resolution]] 1.00Å' scene=''>
		+	== Structural highlights ==
		+	<table><tr><td colspan='2'>[[6nfr]] is a 1 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6NFR OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6NFR FirstGlance]. <br>
		+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
		+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6nfr FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6nfr OCA], [http://pdbe.org/6nfr PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6nfr RCSB], [http://www.ebi.ac.uk/pdbsum/6nfr PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6nfr ProSAT]</span></td></tr>
		+	</table>
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	The bacterial CopC family of proteins are periplasmic copper binding proteins that act in copper detoxification. These proteins contain Cu(I) and/or Cu(II) binding sites, with the family that binds Cu(II) only the most prevalent, based on sequence analyses. Here we present three crystal structures of the CopC protein from Pseudomonas fluorescens (Pf-CopC) that include the wild type protein bound to Cu(II) and two variant proteins, where Cu(II) coordinating ligands were mutated, in Cu-free states. We show that the Cu(II) atom in Pf-CopC is coordinated by two His residues, an Asp residue and the N-terminus of the protein (therefore a 3N+O site). This coordination structure is consistent with all structurally characterized proteins from the CopC family to date. Structural and sequence analyses of the CopC family allow a relationship between protein sequence and the Cu(II) binding affinity of these proteins to be proposed.

-	~~Authors: Maher, M~~.J.	+	The crystal structure of the CopC protein from Pseudomonas fluorescens reveals amended classifications for the CopC protein family.,Udagedara SR, Wijekoon CJK, Xiao Z, Wedd AG, Maher MJ J Inorg Biochem. 2019 Mar 21;195:194-200. doi: 10.1016/j.jinorgbio.2019.03.007. PMID:30981030<ref>PMID:30981030</ref>

-	~~Description~~: ~~CopC from Pseudomonas fluorescens~~	+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
-	[[Category: ~~Unreleased~~ Structures]]	+	</div>
-	[[Category: Maher, M.J]]	+	<div class="pdbe-citations 6nfr" style="background-color:#fffaf0;"></div>
		+	== References ==
		+	<references/>
		+	__TOC__
		+	</StructureSection>
		+	[[Category: Large Structures]]
		+	[[Category: Maher, M J]]
		+	[[Category: Copc]]
		+	[[Category: Copper binding]]
		+	[[Category: Metal binding protein]]
		+	[[Category: Metallochaperone]]

OCA at 07:33, 13 February 2019

OCA — Wed, 13 Feb 2019 07:33:23 GMT

←Older revision		Revision as of 07:33, 13 February 2019
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	'''Unreleased structure'''		'''Unreleased structure'''

-	The entry 6nfr is ON HOLD	+	The entry 6nfr is ON HOLD until Paper Publication

	Authors: Maher, M.J.		Authors: Maher, M.J.

OCA: Protected "6nfr" [edit=sysop:move=sysop]

OCA — Wed, 26 Dec 2018 06:52:36 GMT

Protected "6nfr" [edit=sysop:move=sysop]

←Older revision

Revision as of 06:52, 26 December 2018

OCA: New page: '''Unreleased structure''' The entry 6nfr is ON HOLD Authors: Maher, M.J. Description: CopC from Pseudomonas fluorescens Category: Unreleased Structures Category: Maher, M.J

OCA — Wed, 26 Dec 2018 06:52:34 GMT

New page: '''Unreleased structure''' The entry 6nfr is ON HOLD Authors: Maher, M.J. Description: CopC from Pseudomonas fluorescens Category: Unreleased Structures Category: Maher, M.J

New page

'''Unreleased structure'''

The entry 6nfr is ON HOLD

Authors: Maher, M.J.

Description: CopC from Pseudomonas fluorescens
[[Category: Unreleased Structures]]
[[Category: Maher, M.J]]