6nvw - Revision history

OCA at 17:38, 20 November 2019

OCA — Wed, 20 Nov 2019 17:38:24 GMT

←Older revision		Revision as of 17:38, 20 November 2019
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	<StructureSection load='6nvw' size='340' side='right'caption='[[6nvw]], [[Resolution\|resolution]] 2.20Å' scene=''>		<StructureSection load='6nvw' size='340' side='right'caption='[[6nvw]], [[Resolution\|resolution]] 2.20Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[6nvw]] is a 2 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6NVW OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6NVW FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[6nvw]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Atcc_14581 Atcc 14581]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6NVW OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6NVW FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene></td></tr>
		+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">pac, pga ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1404 ATCC 14581])</td></tr>
	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Penicillin_amidase Penicillin amidase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.5.1.11 3.5.1.11] </span></td></tr>		<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Penicillin_amidase Penicillin amidase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.5.1.11 3.5.1.11] </span></td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6nvw FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6nvw OCA], [http://pdbe.org/6nvw PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6nvw RCSB], [http://www.ebi.ac.uk/pdbsum/6nvw PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6nvw ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6nvw FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6nvw OCA], [http://pdbe.org/6nvw PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6nvw RCSB], [http://www.ebi.ac.uk/pdbsum/6nvw PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6nvw ProSAT]</span></td></tr>
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	</div>		</div>
	<div class="pdbe-citations 6nvw" style="background-color:#fffaf0;"></div>		<div class="pdbe-citations 6nvw" style="background-color:#fffaf0;"></div>
		+
		+	==See Also==
		+	*[[Penicillin acylase\|Penicillin acylase]]
	== References ==		== References ==
	<references/>		<references/>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
		+	[[Category: Atcc 14581]]
	[[Category: Large Structures]]		[[Category: Large Structures]]
	[[Category: Penicillin amidase]]		[[Category: Penicillin amidase]]

OCA at 05:55, 3 July 2019

OCA — Wed, 03 Jul 2019 05:55:58 GMT

←Older revision		Revision as of 05:55, 3 July 2019
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-	'''Unreleased structure'''

-	~~The entry~~ 6nvw is ~~ON HOLD until Paper~~ Publication	+	==Crystal structure of penicillin G acylase from Bacillus megaterium==
		+	<StructureSection load='6nvw' size='340' side='right'caption='[[6nvw]], [[Resolution\|resolution]] 2.20Å' scene=''>
		+	== Structural highlights ==
		+	<table><tr><td colspan='2'>[[6nvw]] is a 2 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6NVW OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6NVW FirstGlance]. <br>
		+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene></td></tr>
		+	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Penicillin_amidase Penicillin amidase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.5.1.11 3.5.1.11] </span></td></tr>
		+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6nvw FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6nvw OCA], [http://pdbe.org/6nvw PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6nvw RCSB], [http://www.ebi.ac.uk/pdbsum/6nvw PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6nvw ProSAT]</span></td></tr>
		+	</table>
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	Penicillin G acylase (PGA) catalyzes the hydrolysis of penicillin G to 6-aminopenicillanic acid and phenylacetic acid, which provides the precursor for most semisynthetic penicillins. Most applications rely on PGAs from Gram-negative bacteria. Here we describe the first three crystal structures for PGAs from Gram-positive Bacilli and their utilization in protein engineering experiments for the manipulation of their thermostability. PGAs from Bacillus megaterium (BmPGA, Tm = 56.0 degrees C), Bacillus thermotolerans (BtPGA, Tm = 64.5 degrees C), and Bacillus sp. FJAT-27231 (FJAT-PGA, Tm = 74.3 degrees C) were recombinantly produced with B. megaterium, secreted, purified to apparent heterogeneity, and crystallized. Structures with resolutions of 2.20 A (BmPGA), 2.27 A (BtPGA), and 1.36 A (FJAT-PGA) were obtained. They revealed high overall similarity, reflecting the high identity of up to approx. 75%. Notably, the active center displays a deletion of more than ten residues with respect to PGAs from Gram-negatives. This enlarges the substrate binding site and may indicate a different substrate spectrum. Based on the structures, ten single-chain FJAT-PGAs carrying artificial linkers were produced. However, in all cases, complete linker cleavage was observed. While thermostability remained in the wild-type range, the enzymatic activity dropped between 30 and 60%. Furthermore, four hybrid PGAs carrying subunits from two different enzymes were successfully produced. Their thermostabilities mostly lay between the values of the two mother enzymes. For one PGA increased, enzyme activity was observed. Overall, the three novel PGA structures combined with initial protein engineering experiments provide the basis for establishment of new PGA-based biotechnological processes.

-	~~Authors: Blankenfeldt~~, W.	+	Crystal structures and protein engineering of three different penicillin G acylases from Gram-positive bacteria with different thermostability.,Mayer J, Pippel J, Gunther G, Muller C, Lauermann A, Knuuti T, Blankenfeldt W, Jahn D, Biedendieck R Appl Microbiol Biotechnol. 2019 Jun 21. pii: 10.1007/s00253-019-09977-8. doi:, 10.1007/s00253-019-09977-8. PMID:31227867<ref>PMID:31227867</ref>

-	~~Description: Crystal structure~~ of ~~penicillin G acylase from Bacillus megaterium~~	+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
-	[[Category: ~~Unreleased~~ Structures]]	+	</div>
		+	<div class="pdbe-citations 6nvw" style="background-color:#fffaf0;"></div>
		+	== References ==
		+	<references/>
		+	__TOC__
		+	</StructureSection>
		+	[[Category: Large Structures]]
		+	[[Category: Penicillin amidase]]
	[[Category: Blankenfeldt, W]]		[[Category: Blankenfeldt, W]]
		+	[[Category: Acylase]]
		+	[[Category: Hydrolase]]
		+	[[Category: Penicillin]]

OCA at 05:09, 21 February 2019

OCA — Thu, 21 Feb 2019 05:09:51 GMT

←Older revision		Revision as of 05:09, 21 February 2019
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	'''Unreleased structure'''		'''Unreleased structure'''

-	The entry 6nvw is ON HOLD	+	The entry 6nvw is ON HOLD until Paper Publication

	Authors: Blankenfeldt, W.		Authors: Blankenfeldt, W.

OCA: Protected "6nvw" [edit=sysop:move=sysop]

OCA — Wed, 13 Feb 2019 07:50:50 GMT

Protected "6nvw" [edit=sysop:move=sysop]

←Older revision

Revision as of 07:50, 13 February 2019

OCA: New page: '''Unreleased structure''' The entry 6nvw is ON HOLD Authors: Blankenfeldt, W. Description: Crystal structure of penicillin G acylase from Bacillus megaterium [[Category: Unreleased St...

OCA — Wed, 13 Feb 2019 07:50:49 GMT

New page: '''Unreleased structure''' The entry 6nvw is ON HOLD Authors: Blankenfeldt, W. Description: Crystal structure of penicillin G acylase from Bacillus megaterium [[Category: Unreleased St...

New page

'''Unreleased structure'''

The entry 6nvw is ON HOLD

Authors: Blankenfeldt, W.

Description: Crystal structure of penicillin G acylase from Bacillus megaterium
[[Category: Unreleased Structures]]
[[Category: Blankenfeldt, W]]