6p7t - Revision history

OCA at 14:54, 13 March 2024

OCA — Wed, 13 Mar 2024 14:54:15 GMT

←Older revision		Revision as of 14:54, 13 March 2024
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	<StructureSection load='6p7t' size='340' side='right'caption='[[6p7t]], [[Resolution\|resolution]] 2.50Å' scene=''>		<StructureSection load='6p7t' size='340' side='right'caption='[[6p7t]], [[Resolution\|resolution]] 2.50Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[6p7t]] is a 1 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6P7T OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=6P7T FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[6p7t]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Vibrio_cholerae Vibrio cholerae]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6P7T OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=6P7T FirstGlance]. <br>
-	</td></tr><tr id='~~related~~'><td class="sblockLbl"><b>[[~~Related_structure~~\|~~Related~~:]]</b></td><td class="sblockDat">[[~~6p7r~~\|~~6p7r~~]]</td></tr>	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 2.5Å</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=6p7t FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6p7t OCA], [~~http~~://pdbe.org/6p7t PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=6p7t RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/6p7t PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=6p7t ProSAT]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=6p7t FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6p7t OCA], [https://pdbe.org/6p7t PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=6p7t RCSB], [https://www.ebi.ac.uk/pdbsum/6p7t PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=6p7t ProSAT]</span></td></tr>
	</table>		</table>
-	~~<div style~~=~~"background-color:#fffaf0;">~~	+	== Function ==
-	=~~= Publication Abstract from PubMed~~ ==	+	[https://www.uniprot.org/uniprot/Q9F5Q9_VIBCL Q9F5Q9_VIBCL]
-	~~The AraC~~/~~XylS-family transcriptional regulator ToxT is the master virulence activator of Vibrio cholerae, the gram-negative bacterial pathogen that causes the diarrheal disease cholera~~. Unsaturated fatty acids (UFAs) found in bile inhibit the activity of ToxT. Crystal structures of inhibited ToxT bound to UFA or synthetic inhibitors have been reported, but no structure of ToxT in an active conformation had been determined. Here we present the 2.5 A structure of ToxT without an inhibitor. The structure suggests release of UFA or inhibitor leads to an increase in flexibility, allowing ToxT to adopt an active conformation that is able to dimerize and bind DNA. Small-angle X-ray scattering was used to validate a structural model of an open ToxT dimer bound to the cholera toxin promoter. The results presented here provide a detailed structural mechanism for virulence gene regulation in V. cholerae by the UFA components of bile and other synthetic ToxT inhibitors.	+

-	Structural basis for virulence regulation in Vibrio cholerae by unsaturated fatty acid components of bile.,Cruite JT, Kovacikova G, Clark KA, Woodbrey AK, Skorupski K, Kull FJ Commun Biol. 2019 Nov 28;2:440. doi: 10.1038/s42003-019-0686-x. eCollection 2019. PMID:31815195<ref>PMID:31815195</ref>	+	==See Also==
-		+	*[[ToxT\|ToxT]]
-	~~From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>~~	+
-	~~</div>~~	+
-	~~<div class="pdbe-citations 6p7t" style="background-color:#fffaf0;"></div>~~	+
-	== ~~References~~ ==	+
-	~~<references/>~~	+
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: ~~Cruite, J T~~]]	+	[[Category: Vibrio cholerae]]
-	[[Category: ~~Kull, F J~~]]	+	[[Category: Cruite JT]]
-	[[Category: ~~Arac]]~~	+	[[Category: Kull FJ]]
-	~~[[Category: Cholerae]]~~	+
-	~~[[Category: Dna binding protein]]~~	+
-	~~[[Category: Virulence regulation]]~~	+
-	~~[[Category: Xyl~~]]	+

OCA at 08:20, 1 January 2020

OCA — Wed, 01 Jan 2020 08:20:10 GMT

←Older revision		Revision as of 08:20, 1 January 2020
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-	'''Unreleased structure'''

-	~~The entry~~ 6p7t is ~~ON HOLD until Paper~~ Publication	+	==Crystal structure of apo ToxT K231A from Vibrio cholerae strain SCE256==
		+	<StructureSection load='6p7t' size='340' side='right'caption='[[6p7t]], [[Resolution\|resolution]] 2.50Å' scene=''>
		+	== Structural highlights ==
		+	<table><tr><td colspan='2'>[[6p7t]] is a 1 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6P7T OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6P7T FirstGlance]. <br>
		+	</td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[6p7r\|6p7r]]</td></tr>
		+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6p7t FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6p7t OCA], [http://pdbe.org/6p7t PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6p7t RCSB], [http://www.ebi.ac.uk/pdbsum/6p7t PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6p7t ProSAT]</span></td></tr>
		+	</table>
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	The AraC/XylS-family transcriptional regulator ToxT is the master virulence activator of Vibrio cholerae, the gram-negative bacterial pathogen that causes the diarrheal disease cholera. Unsaturated fatty acids (UFAs) found in bile inhibit the activity of ToxT. Crystal structures of inhibited ToxT bound to UFA or synthetic inhibitors have been reported, but no structure of ToxT in an active conformation had been determined. Here we present the 2.5 A structure of ToxT without an inhibitor. The structure suggests release of UFA or inhibitor leads to an increase in flexibility, allowing ToxT to adopt an active conformation that is able to dimerize and bind DNA. Small-angle X-ray scattering was used to validate a structural model of an open ToxT dimer bound to the cholera toxin promoter. The results presented here provide a detailed structural mechanism for virulence gene regulation in V. cholerae by the UFA components of bile and other synthetic ToxT inhibitors.

-	~~Authors:~~ Cruite, ~~J.T.~~, ~~Kull~~, F.J.	+	Structural basis for virulence regulation in Vibrio cholerae by unsaturated fatty acid components of bile.,Cruite JT, Kovacikova G, Clark KA, Woodbrey AK, Skorupski K, Kull FJ Commun Biol. 2019 Nov 28;2:440. doi: 10.1038/s42003-019-0686-x. eCollection 2019. PMID:31815195<ref>PMID:31815195</ref>

-	~~Description: Crystal structure~~ of ~~apo ToxT K231A from Vibrio cholerae strain SCE256~~	+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
-	[[Category: ~~Unreleased~~ Structures]]	+	</div>
-	[[Category: ~~Kull~~, F.J]]	+	<div class="pdbe-citations 6p7t" style="background-color:#fffaf0;"></div>
-	[[Category: ~~Cruite~~, J.T]]	+	== References ==
		+	<references/>
		+	__TOC__
		+	</StructureSection>
		+	[[Category: Large Structures]]
		+	[[Category: Cruite, J T]]
		+	[[Category: Kull, F J]]
		+	[[Category: Arac]]
		+	[[Category: Cholerae]]
		+	[[Category: Dna binding protein]]
		+	[[Category: Virulence regulation]]
		+	[[Category: Xyl]]

OCA at 04:22, 24 July 2019

OCA — Wed, 24 Jul 2019 04:22:06 GMT

←Older revision		Revision as of 04:22, 24 July 2019
Line 1:		Line 1:
	'''Unreleased structure'''		'''Unreleased structure'''

-	The entry 6p7t is ON HOLD	+	The entry 6p7t is ON HOLD until Paper Publication

	Authors: Cruite, J.T., Kull, F.J.		Authors: Cruite, J.T., Kull, F.J.

OCA: Protected "6p7t" [edit=sysop:move=sysop]

OCA — Wed, 12 Jun 2019 04:07:55 GMT

Protected "6p7t" [edit=sysop:move=sysop]

←Older revision

Revision as of 04:07, 12 June 2019

OCA: New page: '''Unreleased structure''' The entry 6p7t is ON HOLD Authors: Cruite, J.T., Kull, F.J. Description: Crystal structure of apo ToxT K231A from Vibrio cholerae strain SCE256 [[Category: U...

OCA — Wed, 12 Jun 2019 04:07:54 GMT

New page: '''Unreleased structure''' The entry 6p7t is ON HOLD Authors: Cruite, J.T., Kull, F.J. Description: Crystal structure of apo ToxT K231A from Vibrio cholerae strain SCE256 [[Category: U...

New page

'''Unreleased structure'''

The entry 6p7t is ON HOLD

Authors: Cruite, J.T., Kull, F.J.

Description: Crystal structure of apo ToxT K231A from Vibrio cholerae strain SCE256
[[Category: Unreleased Structures]]
[[Category: Kull, F.J]]
[[Category: Cruite, J.T]]