6pnj - Revision history

OCA at 04:30, 11 April 2020

OCA — Sat, 11 Apr 2020 04:30:19 GMT

←Older revision		Revision as of 04:30, 11 April 2020
Line 3:		Line 3:
	<SX load='6pnj' size='340' side='right' viewer='molstar' caption='[[6pnj]], [[Resolution\|resolution]] 3.20Å' scene=''>		<SX load='6pnj' size='340' side='right' viewer='molstar' caption='[[6pnj]], [[Resolution\|resolution]] 3.20Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[6pnj]] is a 36 chain structure with sequence from [http://en.wikipedia.org/wiki/Fischerella_thermalis_pcc_7521 Fischerella thermalis pcc 7521]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6PNJ OCA]. For a <b>guided tour on the structure components</b> use [http://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=6PNJ FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[6pnj]] is a 36 chain structure with sequence from [http://en.wikipedia.org/wiki/Fischerella_thermalis_pcc_7521 Fischerella thermalis pcc 7521]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6PNJ OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=6PNJ FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=BCR:BETA-CAROTENE'>BCR</scene>, <scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=CL0:CHLOROPHYLL+A+ISOMER'>CL0</scene>, <scene name='pdbligand=CLA:CHLOROPHYLL+A'>CLA</scene>, <scene name='pdbligand=F6C:Chlorophyll+F'>F6C</scene>, <scene name='pdbligand=LHG:1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE'>LHG</scene>, <scene name='pdbligand=LMG:1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE'>LMG</scene>, <scene name='pdbligand=LMT:DODECYL-BETA-D-MALTOSIDE'>LMT</scene>, <scene name='pdbligand=PQN:PHYLLOQUINONE'>PQN</scene>, <scene name='pdbligand=SF4:IRON/SULFUR+CLUSTER'>SF4</scene></td></tr>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=BCR:BETA-CAROTENE'>BCR</scene>, <scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=CL0:CHLOROPHYLL+A+ISOMER'>CL0</scene>, <scene name='pdbligand=CLA:CHLOROPHYLL+A'>CLA</scene>, <scene name='pdbligand=F6C:Chlorophyll+F'>F6C</scene>, <scene name='pdbligand=LHG:1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE'>LHG</scene>, <scene name='pdbligand=LMG:1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE'>LMG</scene>, <scene name='pdbligand=LMT:DODECYL-BETA-D-MALTOSIDE'>LMT</scene>, <scene name='pdbligand=PQN:PHYLLOQUINONE'>PQN</scene>, <scene name='pdbligand=SF4:IRON/SULFUR+CLUSTER'>SF4</scene></td></tr>
	<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=UNK:UNKNOWN'>UNK</scene></td></tr>		<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=UNK:UNKNOWN'>UNK</scene></td></tr>
	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Photosystem_I Photosystem I], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.97.1.12 1.97.1.12] </span></td></tr>		<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Photosystem_I Photosystem I], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.97.1.12 1.97.1.12] </span></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=6pnj FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6pnj OCA], [http://pdbe.org/6pnj PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6pnj RCSB], [http://www.ebi.ac.uk/pdbsum/6pnj PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6pnj ProSAT]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=6pnj FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6pnj OCA], [http://pdbe.org/6pnj PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6pnj RCSB], [http://www.ebi.ac.uk/pdbsum/6pnj PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6pnj ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==

OCA at 23:24, 6 March 2020

OCA — Fri, 06 Mar 2020 23:24:43 GMT

←Older revision		Revision as of 23:24, 6 March 2020
Line 1:		Line 1:

	==Structure of Photosystem I Acclimated to Far-red Light==		==Structure of Photosystem I Acclimated to Far-red Light==
-	<~~StructureSection~~ load='6pnj' size='340' side='right'caption='[[6pnj]], [[Resolution\|resolution]] 3.20Å' scene=''>	+	<SX load='6pnj' size='340' side='right' viewer='molstar' caption='[[6pnj]], [[Resolution\|resolution]] 3.20Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[6pnj]] is a 36 chain structure with sequence from [http://en.wikipedia.org/wiki/Fischerella_thermalis_pcc_7521 Fischerella thermalis pcc 7521]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6PNJ OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6PNJ FirstGlance]. <br>		<table><tr><td colspan='2'>[[6pnj]] is a 36 chain structure with sequence from [http://en.wikipedia.org/wiki/Fischerella_thermalis_pcc_7521 Fischerella thermalis pcc 7521]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6PNJ OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6PNJ FirstGlance]. <br>
Line 12:		Line 12:
	[[http://www.uniprot.org/uniprot/G6FW50_9CYAN G6FW50_9CYAN]] Apoprotein for the two 4Fe-4S centers FA and FB of photosystem I (PSI); essential for photochemical activity. FB is the terminal electron acceptor of PSI, donating electrons to ferredoxin. The C-terminus interacts with PsaA/B/D and helps assemble the protein into the PSI complex. Required for binding of PsaD and PsaE to PSI. PSI is a plastocyanin/cytochrome c6-ferredoxin oxidoreductase, converting photonic excitation into a charge separation, which transfers an electron from the donor P700 chlorophyll pair to the spectroscopically characterized acceptors A0, A1, FX, FA and FB in turn.[HAMAP-Rule:MF_01303] [[http://www.uniprot.org/uniprot/A0A2N6KXB6_9CYAN A0A2N6KXB6_9CYAN]] PsaA and PsaB bind P700, the primary electron donor of photosystem I (PSI), as well as the electron acceptors A0, A1 and FX. PSI is a plastocyanin/cytochrome c6-ferredoxin oxidoreductase, converting photonic excitation into a charge separation, which transfers an electron from the donor P700 chlorophyll pair to the spectroscopically characterized acceptors A0, A1, FX, FA and FB in turn. Oxidized P700 is reduced on the lumenal side of the thylakoid membrane by plastocyanin or cytochrome c6.[HAMAP-Rule:MF_00482] PsaA and psaB bind P700, the primary electron donor of photosystem I (PSI), as well as the electron acceptors A0, A1 and FX.[RuleBase:RU003775] [[http://www.uniprot.org/uniprot/G6FME9_9CYAN G6FME9_9CYAN]] PsaA and PsaB bind P700, the primary electron donor of photosystem I (PSI), as well as the electron acceptors A0, A1 and FX. PSI is a plastocyanin/cytochrome c6-ferredoxin oxidoreductase, converting photonic excitation into a charge separation, which transfers an electron from the donor P700 chlorophyll pair to the spectroscopically characterized acceptors A0, A1, FX, FA and FB in turn. Oxidized P700 is reduced on the lumenal side of the thylakoid membrane by plastocyanin or cytochrome c6.[HAMAP-Rule:MF_00458] PsaA and psaB bind P700, the primary electron donor of photosystem I (PSI), as well as the electron acceptors A0, A1 and FX.[RuleBase:RU003775] [[http://www.uniprot.org/uniprot/G6FQU3_9CYAN G6FQU3_9CYAN]] Stabilizes the interaction between PsaC and the PSI core, assists the docking of the ferredoxin to PSI and interacts with ferredoxin-NADP oxidoreductase.[HAMAP-Rule:MF_00613]		[[http://www.uniprot.org/uniprot/G6FW50_9CYAN G6FW50_9CYAN]] Apoprotein for the two 4Fe-4S centers FA and FB of photosystem I (PSI); essential for photochemical activity. FB is the terminal electron acceptor of PSI, donating electrons to ferredoxin. The C-terminus interacts with PsaA/B/D and helps assemble the protein into the PSI complex. Required for binding of PsaD and PsaE to PSI. PSI is a plastocyanin/cytochrome c6-ferredoxin oxidoreductase, converting photonic excitation into a charge separation, which transfers an electron from the donor P700 chlorophyll pair to the spectroscopically characterized acceptors A0, A1, FX, FA and FB in turn.[HAMAP-Rule:MF_01303] [[http://www.uniprot.org/uniprot/A0A2N6KXB6_9CYAN A0A2N6KXB6_9CYAN]] PsaA and PsaB bind P700, the primary electron donor of photosystem I (PSI), as well as the electron acceptors A0, A1 and FX. PSI is a plastocyanin/cytochrome c6-ferredoxin oxidoreductase, converting photonic excitation into a charge separation, which transfers an electron from the donor P700 chlorophyll pair to the spectroscopically characterized acceptors A0, A1, FX, FA and FB in turn. Oxidized P700 is reduced on the lumenal side of the thylakoid membrane by plastocyanin or cytochrome c6.[HAMAP-Rule:MF_00482] PsaA and psaB bind P700, the primary electron donor of photosystem I (PSI), as well as the electron acceptors A0, A1 and FX.[RuleBase:RU003775] [[http://www.uniprot.org/uniprot/G6FME9_9CYAN G6FME9_9CYAN]] PsaA and PsaB bind P700, the primary electron donor of photosystem I (PSI), as well as the electron acceptors A0, A1 and FX. PSI is a plastocyanin/cytochrome c6-ferredoxin oxidoreductase, converting photonic excitation into a charge separation, which transfers an electron from the donor P700 chlorophyll pair to the spectroscopically characterized acceptors A0, A1, FX, FA and FB in turn. Oxidized P700 is reduced on the lumenal side of the thylakoid membrane by plastocyanin or cytochrome c6.[HAMAP-Rule:MF_00458] PsaA and psaB bind P700, the primary electron donor of photosystem I (PSI), as well as the electron acceptors A0, A1 and FX.[RuleBase:RU003775] [[http://www.uniprot.org/uniprot/G6FQU3_9CYAN G6FQU3_9CYAN]] Stabilizes the interaction between PsaC and the PSI core, assists the docking of the ferredoxin to PSI and interacts with ferredoxin-NADP oxidoreductase.[HAMAP-Rule:MF_00613]
	__TOC__		__TOC__
-	</~~StructureSection~~>	+	</SX>
	[[Category: Fischerella thermalis pcc 7521]]		[[Category: Fischerella thermalis pcc 7521]]
	[[Category: Large Structures]]		[[Category: Large Structures]]

OCA at 04:20, 13 February 2020

OCA — Thu, 13 Feb 2020 04:20:39 GMT

←Older revision		Revision as of 04:20, 13 February 2020
Line 1:		Line 1:
-	'''Unreleased structure'''

-	~~The entry~~ 6pnj is ~~ON HOLD until Paper Publication~~	+	==Structure of Photosystem I Acclimated to Far-red Light==
-		+	<StructureSection load='6pnj' size='340' side='right'caption='[[6pnj]], [[Resolution\|resolution]] 3.20Å' scene=''>
-	~~Authors~~:	+	== Structural highlights ==
-		+	<table><tr><td colspan='2'>[[6pnj]] is a 36 chain structure with sequence from [http://en.wikipedia.org/wiki/Fischerella_thermalis_pcc_7521 Fischerella thermalis pcc 7521]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6PNJ OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6PNJ FirstGlance]. <br>
-	~~Description~~:	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=BCR:BETA-CAROTENE'>BCR</scene>, <scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=CL0:CHLOROPHYLL+A+ISOMER'>CL0</scene>, <scene name='pdbligand=CLA:CHLOROPHYLL+A'>CLA</scene>, <scene name='pdbligand=F6C:Chlorophyll+F'>F6C</scene>, <scene name='pdbligand=LHG:1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE'>LHG</scene>, <scene name='pdbligand=LMG:1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE'>LMG</scene>, <scene name='pdbligand=LMT:DODECYL-BETA-D-MALTOSIDE'>LMT</scene>, <scene name='pdbligand=PQN:PHYLLOQUINONE'>PQN</scene>, <scene name='pdbligand=SF4:IRON/SULFUR+CLUSTER'>SF4</scene></td></tr>
-	[[Category: ~~Unreleased~~ Structures]]	+	<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=UNK:UNKNOWN'>UNK</scene></td></tr>
		+	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Photosystem_I Photosystem I], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.97.1.12 1.97.1.12] </span></td></tr>
		+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6pnj FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6pnj OCA], [http://pdbe.org/6pnj PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6pnj RCSB], [http://www.ebi.ac.uk/pdbsum/6pnj PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6pnj ProSAT]</span></td></tr>
		+	</table>
		+	== Function ==
		+	[[http://www.uniprot.org/uniprot/G6FW50_9CYAN G6FW50_9CYAN]] Apoprotein for the two 4Fe-4S centers FA and FB of photosystem I (PSI); essential for photochemical activity. FB is the terminal electron acceptor of PSI, donating electrons to ferredoxin. The C-terminus interacts with PsaA/B/D and helps assemble the protein into the PSI complex. Required for binding of PsaD and PsaE to PSI. PSI is a plastocyanin/cytochrome c6-ferredoxin oxidoreductase, converting photonic excitation into a charge separation, which transfers an electron from the donor P700 chlorophyll pair to the spectroscopically characterized acceptors A0, A1, FX, FA and FB in turn.[HAMAP-Rule:MF_01303] [[http://www.uniprot.org/uniprot/A0A2N6KXB6_9CYAN A0A2N6KXB6_9CYAN]] PsaA and PsaB bind P700, the primary electron donor of photosystem I (PSI), as well as the electron acceptors A0, A1 and FX. PSI is a plastocyanin/cytochrome c6-ferredoxin oxidoreductase, converting photonic excitation into a charge separation, which transfers an electron from the donor P700 chlorophyll pair to the spectroscopically characterized acceptors A0, A1, FX, FA and FB in turn. Oxidized P700 is reduced on the lumenal side of the thylakoid membrane by plastocyanin or cytochrome c6.[HAMAP-Rule:MF_00482] PsaA and psaB bind P700, the primary electron donor of photosystem I (PSI), as well as the electron acceptors A0, A1 and FX.[RuleBase:RU003775] [[http://www.uniprot.org/uniprot/G6FME9_9CYAN G6FME9_9CYAN]] PsaA and PsaB bind P700, the primary electron donor of photosystem I (PSI), as well as the electron acceptors A0, A1 and FX. PSI is a plastocyanin/cytochrome c6-ferredoxin oxidoreductase, converting photonic excitation into a charge separation, which transfers an electron from the donor P700 chlorophyll pair to the spectroscopically characterized acceptors A0, A1, FX, FA and FB in turn. Oxidized P700 is reduced on the lumenal side of the thylakoid membrane by plastocyanin or cytochrome c6.[HAMAP-Rule:MF_00458] PsaA and psaB bind P700, the primary electron donor of photosystem I (PSI), as well as the electron acceptors A0, A1 and FX.[RuleBase:RU003775] [[http://www.uniprot.org/uniprot/G6FQU3_9CYAN G6FQU3_9CYAN]] Stabilizes the interaction between PsaC and the PSI core, assists the docking of the ferredoxin to PSI and interacts with ferredoxin-NADP oxidoreductase.[HAMAP-Rule:MF_00613]
		+	__TOC__
		+	</StructureSection>
		+	[[Category: Fischerella thermalis pcc 7521]]
		+	[[Category: Large Structures]]
		+	[[Category: Photosystem I]]
		+	[[Category: Bryant, D A]]
		+	[[Category: Fromme, P]]
		+	[[Category: Gisriel, C J]]
		+	[[Category: Golbeck, J H]]
		+	[[Category: Ho, M]]
		+	[[Category: Kurashov, V]]
		+	[[Category: Shen, G]]
		+	[[Category: Williams, D]]
		+	[[Category: Zhang, S]]
		+	[[Category: Photosynthesis]]
		+	[[Category: Trimeric alpha helical complex]]

OCA at 09:00, 17 July 2019

OCA — Wed, 17 Jul 2019 09:00:47 GMT

←Older revision		Revision as of 09:00, 17 July 2019
Line 1:		Line 1:
	'''Unreleased structure'''		'''Unreleased structure'''

-	The entry 6pnj is ON HOLD	+	The entry 6pnj is ON HOLD until Paper Publication

	Authors:		Authors:

OCA: Protected "6pnj" [edit=sysop:move=sysop]

OCA — Wed, 10 Jul 2019 04:18:24 GMT

Protected "6pnj" [edit=sysop:move=sysop]

←Older revision

Revision as of 04:18, 10 July 2019

OCA: New page: '''Unreleased structure''' The entry 6pnj is ON HOLD Authors: Description: Category: Unreleased Structures

OCA — Wed, 10 Jul 2019 04:18:23 GMT

New page: '''Unreleased structure''' The entry 6pnj is ON HOLD Authors: Description: Category: Unreleased Structures

New page

'''Unreleased structure'''

The entry 6pnj is ON HOLD

Authors:

Description:
[[Category: Unreleased Structures]]