6psm - Revision history

OCA at 07:35, 11 October 2023

OCA — Wed, 11 Oct 2023 07:35:08 GMT

←Older revision		Revision as of 07:35, 11 October 2023
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	<StructureSection load='6psm' size='340' side='right'caption='[[6psm]], [[Resolution\|resolution]] 1.95Å' scene=''>		<StructureSection load='6psm' size='340' side='right'caption='[[6psm]], [[Resolution\|resolution]] 1.95Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[6psm]] is a 6 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/~~Alteromonas_fuliginea Alteromonas~~ fuliginea]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6PSM OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=6PSM FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[6psm]] is a 6 chain structure with sequence from [https://en.wikipedia.org/wiki/Pseudoalteromonas_fuliginea Pseudoalteromonas fuliginea]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6PSM OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=6PSM FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=9RN:3,6-anhydro-D-galactose'>9RN</scene>, <scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=G4S:4-O-SULFO-BETA-D-GALACTOPYRANOSE'>G4S</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene>~~</td></tr>~~	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 1.95Å</td></tr>
-	~~<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[6prm\|6prm]]</td></tr>~~	+	<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=9RN:3,6-anhydro-D-galactose'>9RN</scene>, <scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=G4S:4-O-SULFO-BETA-D-GALACTOPYRANOSE'>G4S</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
-	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">EU509_08890 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1872678 Alteromonas fuliginea])</td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=6psm FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6psm OCA], [https://pdbe.org/6psm PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=6psm RCSB], [https://www.ebi.ac.uk/pdbsum/6psm PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=6psm ProSAT]</span></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=6psm FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6psm OCA], [~~http~~://pdbe.org/6psm PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=6psm RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/6psm PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=6psm ProSAT]</span></td></tr>	+
	</table>		</table>
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	Pseudoalteromonas is a globally distributed marine-associated genus that can be found in a broad range of aquatic environments, including in association with macroalgal surfaces where they may take advantage of these rich sources of polysaccharides. The metabolic systems that confer the ability to metabolize this abundant form of photosynthetically fixed carbon, however, are not yet fully understood. Through genomics, transcriptomics, microbiology, and specific structure-function studies of pathway components we address the capacity of newly isolated marine pseudoalteromonads to metabolize the red algal galactan carrageenan. The results reveal that the kappa/iota-carrageenan specific polysaccharide utilization locus (CarPUL) enables isolates possessing this locus the ability to grow on this substrate. Biochemical and structural analysis of the enzymatic components of the CarPUL promoted the development of a detailed model of the kappa/iota-carrageenan metabolic pathway deployed by pseudoalteromonads, thus furthering our understanding of how these microbes have adapted to a unique environmental niche.
		+
		+	Insights into the kappa/iota-carrageenan metabolism pathway of some marine Pseudoalteromonas species.,Hettle AG, Hobbs JK, Pluvinage B, Vickers C, Abe KT, Salama-Alber O, McGuire BE, Hehemann JH, Hui JPM, Berrue F, Banskota A, Zhang J, Bottos EM, Van Hamme J, Boraston AB Commun Biol. 2019 Dec 19;2:474. doi: 10.1038/s42003-019-0721-y. eCollection 2019. PMID:31886414<ref>PMID:31886414</ref>
		+
		+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
		+	</div>
		+	<div class="pdbe-citations 6psm" style="background-color:#fffaf0;"></div>
		+
		+	==See Also==
		+	*[[Sulfatase 3D structures\|Sulfatase 3D structures]]
		+	== References ==
		+	<references/>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: Alteromonas fuliginea]]
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: ~~Boraston, A B~~]]	+	[[Category: Pseudoalteromonas fuliginea]]
-	[[Category: ~~Hettle, A G~~]]	+	[[Category: Boraston AB]]
-	[[Category: ~~Hydrolase]]~~	+	[[Category: Hettle AG]]
-	~~[[Category: S1 sulfatase~~]]	+

OCA at 09:40, 8 January 2020

OCA — Wed, 08 Jan 2020 09:40:49 GMT

←Older revision		Revision as of 09:40, 8 January 2020
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-	'''Unreleased structure'''

-	~~The entry~~ 6psm is ~~ON HOLD until Paper Publication~~	+	==Crystal structure of PsS1_19B C77S in complex with kappa-neocarrabiose==
-		+	<StructureSection load='6psm' size='340' side='right'caption='[[6psm]], [[Resolution\|resolution]] 1.95Å' scene=''>
-	~~Authors~~: ~~Hettle~~, A.G., ~~Boraston~~, A.B.	+	== Structural highlights ==
-		+	<table><tr><td colspan='2'>[[6psm]] is a 6 chain structure with sequence from [http://en.wikipedia.org/wiki/Alteromonas_fuliginea Alteromonas fuliginea]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6PSM OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6PSM FirstGlance]. <br>
-	~~Description~~: ~~Crystal structure of PsS1_19B C77S in complex with kappa-neocarrabiose~~	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=9RN:3,6-anhydro-D-galactose'>9RN</scene>, <scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=G4S:4-O-SULFO-BETA-D-GALACTOPYRANOSE'>G4S</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
-	[[Category: ~~Unreleased~~ Structures]]	+	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[6prm\|6prm]]</td></tr>
-	[[Category: Boraston, A.B]]	+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">EU509_08890 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1872678 Alteromonas fuliginea])</td></tr>
-	[[Category: Hettle, A.G]]	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6psm FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6psm OCA], [http://pdbe.org/6psm PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6psm RCSB], [http://www.ebi.ac.uk/pdbsum/6psm PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6psm ProSAT]</span></td></tr>
		+	</table>
		+	__TOC__
		+	</StructureSection>
		+	[[Category: Alteromonas fuliginea]]
		+	[[Category: Large Structures]]
		+	[[Category: Boraston, A B]]
		+	[[Category: Hettle, A G]]
		+	[[Category: Hydrolase]]
		+	[[Category: S1 sulfatase]]

OCA at 04:15, 7 August 2019

OCA — Wed, 07 Aug 2019 04:15:47 GMT

←Older revision		Revision as of 04:15, 7 August 2019
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	'''Unreleased structure'''		'''Unreleased structure'''

-	The entry 6psm is ON HOLD	+	The entry 6psm is ON HOLD until Paper Publication

	Authors: Hettle, A.G., Boraston, A.B.		Authors: Hettle, A.G., Boraston, A.B.

OCA: Protected "6psm" [edit=sysop:move=sysop]

OCA — Wed, 24 Jul 2019 04:30:36 GMT

Protected "6psm" [edit=sysop:move=sysop]

←Older revision

Revision as of 04:30, 24 July 2019

OCA: New page: '''Unreleased structure''' The entry 6psm is ON HOLD Authors: Hettle, A.G., Boraston, A.B. Description: Crystal structure of PsS1_19B C77S in complex with kappa-neocarrabiose [[Categor...

OCA — Wed, 24 Jul 2019 04:30:34 GMT

New page: '''Unreleased structure''' The entry 6psm is ON HOLD Authors: Hettle, A.G., Boraston, A.B. Description: Crystal structure of PsS1_19B C77S in complex with kappa-neocarrabiose [[Categor...

New page

'''Unreleased structure'''

The entry 6psm is ON HOLD

Authors: Hettle, A.G., Boraston, A.B.

Description: Crystal structure of PsS1_19B C77S in complex with kappa-neocarrabiose
[[Category: Unreleased Structures]]
[[Category: Boraston, A.B]]
[[Category: Hettle, A.G]]