6q3r - Revision history

OCA at 11:52, 24 January 2024

OCA — Wed, 24 Jan 2024 11:52:13 GMT

←Older revision		Revision as of 11:52, 24 January 2024
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	<StructureSection load='6q3r' size='340' side='right'caption='[[6q3r]], [[Resolution\|resolution]] 2.69Å' scene=''>		<StructureSection load='6q3r' size='340' side='right'caption='[[6q3r]], [[Resolution\|resolution]] 2.69Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[6q3r]] is a 2 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/Aspergillus_aculeatus Aspergillus aculeatus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6Q3R OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=6Q3R FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[6q3r]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Aspergillus_aculeatus Aspergillus aculeatus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6Q3R OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=6Q3R FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=ACT:ACETATE+ION'>ACT</scene>, <scene name='pdbligand=BMA:BETA-D-MANNOSE'>BMA</scene>, <scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=GAL:BETA-D-GALACTOSE'>GAL</scene>, <scene name='pdbligand=NAG:N-ACETYL-D-GLUCOSAMINE'>NAG</scene>, <scene name='pdbligand=PEG:DI(HYDROXYETHYL)ETHER'>PEG</scene>, <scene name='pdbligand=PG4:TETRAETHYLENE+GLYCOL'>PG4</scene>, <scene name='pdbligand=PG6:1-(2-METHOXY-ETHOXY)-2-{2-[2-(2-METHOXY-ETHOXY]-ETHOXY}-ETHANE'>PG6</scene>, <scene name='pdbligand=PGE:TRIETHYLENE+GLYCOL'>PGE</scene><~~/td></tr>~~	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 2.69Å</td></tr>
-	~~<tr id~~='~~activity'><td class~~=~~"sblockLbl"><b>Activity~~:~~</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Arabinogalactan_endo~~-beta-~~1,4-galactanase Arabinogalactan endo-beta-1,4-galactanase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.2.1.89 3.2.1.89]~~ </~~span~~></td></tr>	+	<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ACT:ACETATE+ION'>ACT</scene>, <scene name='pdbligand=BMA:BETA-D-MANNOSE'>BMA</scene>, <scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=GAL:BETA-D-GALACTOSE'>GAL</scene>, <scene name='pdbligand=NAG:N-ACETYL-D-GLUCOSAMINE'>NAG</scene>, <scene name='pdbligand=PEG:DI(HYDROXYETHYL)ETHER'>PEG</scene>, <scene name='pdbligand=PG4:TETRAETHYLENE+GLYCOL'>PG4</scene>, <scene name='pdbligand=PG6:1-(2-METHOXY-ETHOXY)-2-{2-[2-(2-METHOXY-ETHOXY]-ETHOXY}-ETHANE'>PG6</scene>, <scene name='pdbligand=PGE:TRIETHYLENE+GLYCOL'>PGE</scene>, <scene name='pdbligand=PRD_900113:4beta-beta-galactobiose'>PRD_900113</scene></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=6q3r FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6q3r OCA], [~~http~~://pdbe.org/6q3r PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=6q3r RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/6q3r PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=6q3r ProSAT]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=6q3r FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6q3r OCA], [https://pdbe.org/6q3r PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=6q3r RCSB], [https://www.ebi.ac.uk/pdbsum/6q3r PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=6q3r ProSAT]</span></td></tr>
	</table>		</table>
		+	== Function ==
		+	[https://www.uniprot.org/uniprot/GANA_ASPAC GANA_ASPAC]
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
	== Publication Abstract from PubMed ==		== Publication Abstract from PubMed ==
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	</div>		</div>
	<div class="pdbe-citations 6q3r" style="background-color:#fffaf0;"></div>		<div class="pdbe-citations 6q3r" style="background-color:#fffaf0;"></div>
		+
		+	==See Also==
		+	*[[Beta-1%2C4-galactanase\|Beta-1%2C4-galactanase]]
	== References ==		== References ==
	<references/>		<references/>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: Arabinogalactan endo-beta-1,4-galactanase]]
	[[Category: Aspergillus aculeatus]]		[[Category: Aspergillus aculeatus]]
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: Leggio, L Lo]]	+	[[Category: Lo Leggio L]]
-	[[Category: Muderspach~~, S J~~]]	+	[[Category: Muderspach SJ]]
-	[[Category: Poulsen~~, J C.N~~]]	+	[[Category: Poulsen JCN]]
-	[[Category: Torpenholt, S]]	+	[[Category: Torpenholt S]]
-	~~[[Category: Aspergillus aculeatus galactanase complex with galactobiose]]~~	+
-	~~[[Category: Hydrolase~~]]	+

OCA at 07:40, 26 June 2019

OCA — Wed, 26 Jun 2019 07:40:19 GMT

←Older revision		Revision as of 07:40, 26 June 2019
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	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6q3r FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6q3r OCA], [http://pdbe.org/6q3r PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6q3r RCSB], [http://www.ebi.ac.uk/pdbsum/6q3r PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6q3r ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6q3r FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6q3r OCA], [http://pdbe.org/6q3r PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6q3r RCSB], [http://www.ebi.ac.uk/pdbsum/6q3r PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6q3r ProSAT]</span></td></tr>
	</table>		</table>
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	beta-1,4-Galactanases are glycoside hydrolases that are involved in the degradation of pectin and belong to family 53 in the classification of glycoside hydrolases. Previous studies have elucidated the structures of several fungal and two bacterial galactanases, while biochemical studies have indicated differences in the product profiles of different members of the family. Structural studies of ligand complexes have to date been limited to the bacterial members of the family. Here, the first structure of a fungal galactanase in complex with a disaccharide is presented. Galactobiose binds to subsites -1 and -2, thus improving our understanding of ligand binding to galactanases.
		+
		+	Structure of Aspergillus aculeatus beta-1,4-galactanase in complex with galactobiose.,Torpenholt S, Poulsen JCN, Muderspach SJ, De Maria L, Lo Leggio L Acta Crystallogr F Struct Biol Commun. 2019 Jun 1;75(Pt 6):399-404. doi:, 10.1107/S2053230X19005612. Epub 2019 May 10. PMID:31204685<ref>PMID:31204685</ref>
		+
		+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
		+	</div>
		+	<div class="pdbe-citations 6q3r" style="background-color:#fffaf0;"></div>
		+	== References ==
		+	<references/>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>

OCA at 05:45, 12 June 2019

OCA — Wed, 12 Jun 2019 05:45:22 GMT

←Older revision		Revision as of 05:45, 12 June 2019
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-	'''Unreleased structure'''

-	~~The entry~~ 6q3r ~~is ON HOLD~~	+	==ASPERGILLUS ACULEATUS GALACTANASE==
-		+	<StructureSection load='6q3r' size='340' side='right'caption='[[6q3r]], [[Resolution\|resolution]] 2.69Å' scene=''>
-	~~Authors~~: ~~Muderspach~~, S.J., ~~Torpenholt~~, S., ~~Lo Leggio~~, L., ~~Poulsen~~, J.C.N.	+	== Structural highlights ==
-		+	<table><tr><td colspan='2'>[[6q3r]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Aspergillus_aculeatus Aspergillus aculeatus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6Q3R OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6Q3R FirstGlance]. <br>
-	~~Description~~: ~~ASPERGILLUS ACULEATUS GALACTANASE~~	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=ACT:ACETATE+ION'>ACT</scene>, <scene name='pdbligand=BMA:BETA-D-MANNOSE'>BMA</scene>, <scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=GAL:BETA-D-GALACTOSE'>GAL</scene>, <scene name='pdbligand=NAG:N-ACETYL-D-GLUCOSAMINE'>NAG</scene>, <scene name='pdbligand=PEG:DI(HYDROXYETHYL)ETHER'>PEG</scene>, <scene name='pdbligand=PG4:TETRAETHYLENE+GLYCOL'>PG4</scene>, <scene name='pdbligand=PG6:1-(2-METHOXY-ETHOXY)-2-{2-[2-(2-METHOXY-ETHOXY]-ETHOXY}-ETHANE'>PG6</scene>, <scene name='pdbligand=PGE:TRIETHYLENE+GLYCOL'>PGE</scene></td></tr>
-	[[Category: ~~Unreleased~~ Structures]]	+	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Arabinogalactan_endo-beta-1,4-galactanase Arabinogalactan endo-beta-1,4-galactanase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.2.1.89 3.2.1.89] </span></td></tr>
		+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6q3r FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6q3r OCA], [http://pdbe.org/6q3r PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6q3r RCSB], [http://www.ebi.ac.uk/pdbsum/6q3r PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6q3r ProSAT]</span></td></tr>
		+	</table>
		+	__TOC__
		+	</StructureSection>
		+	[[Category: Arabinogalactan endo-beta-1,4-galactanase]]
		+	[[Category: Aspergillus aculeatus]]
		+	[[Category: Large Structures]]
		+	[[Category: Leggio, L Lo]]
		+	[[Category: Muderspach, S J]]
		+	[[Category: Poulsen, J C.N]]
	[[Category: Torpenholt, S]]		[[Category: Torpenholt, S]]
-	[[Category: ~~Poulsen, J.C.N~~]]	+	[[Category: Aspergillus aculeatus galactanase complex with galactobiose]]
-	[[Category: ~~Muderspach, S.J]]~~	+	[[Category: Hydrolase]]
-	~~[[Category: Lo Leggio, L~~]]	+

OCA at 04:51, 3 April 2019

OCA — Wed, 03 Apr 2019 04:51:33 GMT

←Older revision		Revision as of 04:51, 3 April 2019
Line 1:		Line 1:
	'''Unreleased structure'''		'''Unreleased structure'''

-	The entry 6q3r is ON HOLD ~~until Paper Publication~~	+	The entry 6q3r is ON HOLD

	Authors: Muderspach, S.J., Torpenholt, S., Lo Leggio, L., Poulsen, J.C.N.		Authors: Muderspach, S.J., Torpenholt, S., Lo Leggio, L., Poulsen, J.C.N.

OCA at 06:41, 19 December 2018

OCA — Wed, 19 Dec 2018 06:41:45 GMT

←Older revision		Revision as of 06:41, 19 December 2018
Line 1:		Line 1:
	'''Unreleased structure'''		'''Unreleased structure'''

-	The entry 6q3r is ON HOLD	+	The entry 6q3r is ON HOLD until Paper Publication

	Authors: Muderspach, S.J., Torpenholt, S., Lo Leggio, L., Poulsen, J.C.N.		Authors: Muderspach, S.J., Torpenholt, S., Lo Leggio, L., Poulsen, J.C.N.

OCA: Protected "6q3r" [edit=sysop:move=sysop]

OCA — Wed, 12 Dec 2018 05:31:53 GMT

Protected "6q3r" [edit=sysop:move=sysop]

←Older revision

Revision as of 05:31, 12 December 2018

OCA: New page: '''Unreleased structure''' The entry 6q3r is ON HOLD Authors: Muderspach, S.J., Torpenholt, S., Lo Leggio, L., Poulsen, J.C.N. Description: ASPERGILLUS ACULEATUS GALACTANASE [[Category...

OCA — Wed, 12 Dec 2018 05:31:52 GMT

New page: '''Unreleased structure''' The entry 6q3r is ON HOLD Authors: Muderspach, S.J., Torpenholt, S., Lo Leggio, L., Poulsen, J.C.N. Description: ASPERGILLUS ACULEATUS GALACTANASE [[Category...

New page

'''Unreleased structure'''

The entry 6q3r is ON HOLD

Authors: Muderspach, S.J., Torpenholt, S., Lo Leggio, L., Poulsen, J.C.N.

Description: ASPERGILLUS ACULEATUS GALACTANASE
[[Category: Unreleased Structures]]
[[Category: Torpenholt, S]]
[[Category: Poulsen, J.C.N]]
[[Category: Muderspach, S.J]]
[[Category: Lo Leggio, L]]