6qfp - Revision history

OCA at 08:24, 21 May 2019

OCA — Tue, 21 May 2019 08:24:17 GMT

←Older revision		Revision as of 08:24, 21 May 2019
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	<StructureSection load='6qfp' size='340' side='right'caption='[[6qfp]], [[NMR_Ensembles_of_Models \| 10 NMR models]]' scene=''>		<StructureSection load='6qfp' size='340' side='right'caption='[[6qfp]], [[NMR_Ensembles_of_Models \| 10 NMR models]]' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[6qfp]] is a 1 chain structure. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6QFP OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6QFP FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[6qfp]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Microbispora_sp._atcc_pta-5024 Microbispora sp. atcc pta-5024]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6QFP OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6QFP FirstGlance]. <br>
	</td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2mvo\|2mvo]]</td></tr>		</td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2mvo\|2mvo]]</td></tr>
		+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">mlbQ, MPTA5024_21425 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=316330 Microbispora sp. ATCC PTA-5024])</td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6qfp FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6qfp OCA], [http://pdbe.org/6qfp PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6qfp RCSB], [http://www.ebi.ac.uk/pdbsum/6qfp PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6qfp ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6qfp FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6qfp OCA], [http://pdbe.org/6qfp PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6qfp RCSB], [http://www.ebi.ac.uk/pdbsum/6qfp PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6qfp ProSAT]</span></td></tr>
	</table>		</table>
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	</StructureSection>		</StructureSection>
	[[Category: Large Structures]]		[[Category: Large Structures]]
		+	[[Category: Microbispora sp. atcc pta-5024]]
	[[Category: Coles, M]]		[[Category: Coles, M]]
	[[Category: ElGamacy, M]]		[[Category: ElGamacy, M]]

OCA at 07:30, 10 April 2019

OCA — Wed, 10 Apr 2019 07:30:22 GMT

←Older revision		Revision as of 07:30, 10 April 2019
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-	'''Unreleased structure'''

-	~~The entry~~ 6qfp is ~~ON HOLD~~	+	==Solution NMR ensemble for MlbQ at 298K compiled using the CoMAND method==
		+	<StructureSection load='6qfp' size='340' side='right'caption='[[6qfp]], [[NMR_Ensembles_of_Models \| 10 NMR models]]' scene=''>
		+	== Structural highlights ==
		+	<table><tr><td colspan='2'>[[6qfp]] is a 1 chain structure. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6QFP OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6QFP FirstGlance]. <br>
		+	</td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2mvo\|2mvo]]</td></tr>
		+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6qfp FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6qfp OCA], [http://pdbe.org/6qfp PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6qfp RCSB], [http://www.ebi.ac.uk/pdbsum/6qfp PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6qfp ProSAT]</span></td></tr>
		+	</table>
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	The ability of proteins to adopt multiple conformational states is essential to their function, and elucidating the details of such diversity under physiological conditions has been a major challenge. Here we present a generalized method for mapping protein population landscapes by NMR spectroscopy. Experimental NOESY spectra are directly compared with a set of expectation spectra back-calculated across an arbitrary conformational space. Signal decomposition of the experimental spectrum then directly yields the relative populations of local conformational microstates. In this way, averaged descriptions of conformation can be eliminated. As the method quantitatively compares experimental and expectation spectra, it inherently delivers an R factor expressing how well structural models explain the input data. We demonstrate that our method extracts sufficient information from a single 3D NOESY experiment to perform initial model building, refinement, and validation, thus offering a complete de novo structure determination protocol.

-	~~Authors:~~ ElGamacy, M~~., Truffault, V.~~, Zhu, H., ~~Coles~~, M.	+	Mapping Local Conformational Landscapes of Proteins in Solution.,ElGamacy M, Riss M, Zhu H, Truffault V, Coles M Structure. 2019 Mar 26. pii: S0969-2126(19)30083-8. doi:, 10.1016/j.str.2019.03.005. PMID:30930065<ref>PMID:30930065</ref>

-	~~Description: Solution NMR ensemble for human ubiquitin at 298K compiled using~~ the ~~CoMAND method~~	+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
-	~~[[Category~~: ~~Unreleased Structures]]~~	+	</div>
-	[[Category: ~~Zhu, H~~]]	+	<div class="pdbe-citations 6qfp" style="background-color:#fffaf0;"></div>
		+	== References ==
		+	<references/>
		+	__TOC__
		+	</StructureSection>
		+	[[Category: Large Structures]]
	[[Category: Coles, M]]		[[Category: Coles, M]]
		+	[[Category: ElGamacy, M]]
	[[Category: Truffault, V]]		[[Category: Truffault, V]]
-	[[Category: ~~Elgamacy~~, M]]	+	[[Category: Zhu, H]]
		+	[[Category: Comand method]]
		+	[[Category: R-factor refinement]]
		+	[[Category: Signaling protein]]

OCA: Protected "6qfp" [edit=sysop:move=sysop]

OCA — Wed, 16 Jan 2019 10:52:31 GMT

Protected "6qfp" [edit=sysop:move=sysop]

←Older revision

Revision as of 10:52, 16 January 2019

OCA: New page: '''Unreleased structure''' The entry 6qfp is ON HOLD Authors: ElGamacy, M., Truffault, V., Zhu, H., Coles, M. Description: Solution NMR ensemble for human ubiquitin at 298K compiled us...

OCA — Wed, 16 Jan 2019 10:52:29 GMT

New page: '''Unreleased structure''' The entry 6qfp is ON HOLD Authors: ElGamacy, M., Truffault, V., Zhu, H., Coles, M. Description: Solution NMR ensemble for human ubiquitin at 298K compiled us...

New page

'''Unreleased structure'''

The entry 6qfp is ON HOLD

Authors: ElGamacy, M., Truffault, V., Zhu, H., Coles, M.

Description: Solution NMR ensemble for human ubiquitin at 298K compiled using the CoMAND method
[[Category: Unreleased Structures]]
[[Category: Zhu, H]]
[[Category: Coles, M]]
[[Category: Truffault, V]]
[[Category: Elgamacy, M]]