6qnc - Revision history

OCA at 06:21, 10 October 2019

OCA — Thu, 10 Oct 2019 06:21:07 GMT

←Older revision		Revision as of 06:21, 10 October 2019
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	<StructureSection load='6qnc' size='340' side='right'caption='[[6qnc]], [[Resolution\|resolution]] 1.90Å' scene=''>		<StructureSection load='6qnc' size='340' side='right'caption='[[6qnc]], [[Resolution\|resolution]] 1.90Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[6qnc]] is a 1 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6QNC OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6QNC FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[6qnc]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/"actinomyces_rubiginosus"_preobrazhenskaya_et_al._in_gauze_et_al._1957 "actinomyces rubiginosus" preobrazhenskaya et al. in gauze et al. 1957]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6QNC OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6QNC FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CO:COBALT+(II)+ION'>CO</scene>, <scene name='pdbligand=GLC:ALPHA-D-GLUCOSE'>GLC</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CO:COBALT+(II)+ION'>CO</scene>, <scene name='pdbligand=GLC:ALPHA-D-GLUCOSE'>GLC</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr>
		+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">xylA ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1929 "Actinomyces rubiginosus" Preobrazhenskaya et al. in Gauze et al. 1957])</td></tr>
	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Xylose_isomerase Xylose isomerase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=5.3.1.5 5.3.1.5] </span></td></tr>		<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Xylose_isomerase Xylose isomerase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=5.3.1.5 5.3.1.5] </span></td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6qnc FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6qnc OCA], [http://pdbe.org/6qnc PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6qnc RCSB], [http://www.ebi.ac.uk/pdbsum/6qnc PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6qnc ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6qnc FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6qnc OCA], [http://pdbe.org/6qnc PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6qnc RCSB], [http://www.ebi.ac.uk/pdbsum/6qnc PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6qnc ProSAT]</span></td></tr>
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	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
		+	[[Category: Actinomyces rubiginosus preobrazhenskaya et al. in gauze et al. 1957]]
	[[Category: Large Structures]]		[[Category: Large Structures]]
	[[Category: Xylose isomerase]]		[[Category: Xylose isomerase]]

OCA at 10:38, 2 October 2019

OCA — Wed, 02 Oct 2019 10:38:24 GMT

←Older revision		Revision as of 10:38, 2 October 2019
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-	'''Unreleased structure'''

-	~~The entry~~ 6qnc is ~~ON HOLD~~	+	==Liquid Application Method for time-resolved Analyses (LAMA) by serial synchrotron crystallography, Xylose Isomerase 0.1 s timepoint==
		+	<StructureSection load='6qnc' size='340' side='right'caption='[[6qnc]], [[Resolution\|resolution]] 1.90Å' scene=''>
		+	== Structural highlights ==
		+	<table><tr><td colspan='2'>[[6qnc]] is a 1 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6QNC OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6QNC FirstGlance]. <br>
		+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CO:COBALT+(II)+ION'>CO</scene>, <scene name='pdbligand=GLC:ALPHA-D-GLUCOSE'>GLC</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr>
		+	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Xylose_isomerase Xylose isomerase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=5.3.1.5 5.3.1.5] </span></td></tr>
		+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6qnc FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6qnc OCA], [http://pdbe.org/6qnc PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6qnc RCSB], [http://www.ebi.ac.uk/pdbsum/6qnc PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6qnc ProSAT]</span></td></tr>
		+	</table>
		+	== Function ==
		+	[[http://www.uniprot.org/uniprot/XYLA_STRRU XYLA_STRRU]] Involved in D-xylose catabolism.
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	We introduce a liquid application method for time-resolved analyses (LAMA), an in situ mixing approach for serial crystallography. Picoliter-sized droplets are shot onto chip-mounted protein crystals, achieving near-full ligand occupancy within theoretical diffusion times. We demonstrate proof-of-principle binding of GlcNac to lysozyme, and resolve glucose binding and subsequent ring opening in a time-resolved study of xylose isomerase.

-	~~Authors: Mehrabi~~, P., Schulz, ~~E.C.~~, ~~Miller~~, R.J.D.	+	Liquid application method for time-resolved analyses by serial synchrotron crystallography.,Mehrabi P, Schulz EC, Agthe M, Horrell S, Bourenkov G, von Stetten D, Leimkohl JP, Schikora H, Schneider TR, Pearson AR, Tellkamp F, Miller RJD Nat Methods. 2019 Oct;16(10):979-982. doi: 10.1038/s41592-019-0553-1. Epub 2019, Sep 16. PMID:31527838<ref>PMID:31527838</ref>

-	~~Description: Liquid Application Method for time-resolved Analyses (LAMA) by serial synchrotron crystallography~~, ~~Xylose Isomerase 0~~.~~1 s timepoint~~	+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
-	[[Category: ~~Unreleased~~ Structures]]	+	</div>
		+	<div class="pdbe-citations 6qnc" style="background-color:#fffaf0;"></div>
		+	== References ==
		+	<references/>
		+	__TOC__
		+	</StructureSection>
		+	[[Category: Large Structures]]
		+	[[Category: Xylose isomerase]]
	[[Category: Mehrabi, P]]		[[Category: Mehrabi, P]]
-	[[Category: Miller, R.J.D]]	+	[[Category: Miller, R J.D]]
-	[[Category: Schulz, E.C]]	+	[[Category: Schulz, E C]]
		+	[[Category: Complex]]
		+	[[Category: Diffusion]]
		+	[[Category: Dynamic]]
		+	[[Category: Isomerase]]

OCA: Protected "6qnc" [edit=sysop:move=sysop]

OCA — Thu, 21 Feb 2019 05:21:10 GMT

Protected "6qnc" [edit=sysop:move=sysop]

←Older revision

Revision as of 05:21, 21 February 2019

OCA: New page: '''Unreleased structure''' The entry 6qnc is ON HOLD Authors: Mehrabi, P., Schulz, E.C., Miller, R.J.D. Description: Liquid Application Method for time-resolved Analyses (LAMA) by seri...

OCA — Thu, 21 Feb 2019 05:21:08 GMT

New page: '''Unreleased structure''' The entry 6qnc is ON HOLD Authors: Mehrabi, P., Schulz, E.C., Miller, R.J.D. Description: Liquid Application Method for time-resolved Analyses (LAMA) by seri...

New page

'''Unreleased structure'''

The entry 6qnc is ON HOLD

Authors: Mehrabi, P., Schulz, E.C., Miller, R.J.D.

Description: Liquid Application Method for time-resolved Analyses (LAMA) by serial synchrotron crystallography, Xylose Isomerase 0.1 s timepoint
[[Category: Unreleased Structures]]
[[Category: Mehrabi, P]]
[[Category: Miller, R.J.D]]
[[Category: Schulz, E.C]]