6qq8 - Revision history

OCA at 12:06, 24 January 2024

OCA — Wed, 24 Jan 2024 12:06:06 GMT

←Older revision		Revision as of 12:06, 24 January 2024
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	<StructureSection load='6qq8' size='340' side='right'caption='[[6qq8]], [[Resolution\|resolution]] 1.46Å' scene=''>		<StructureSection load='6qq8' size='340' side='right'caption='[[6qq8]], [[Resolution\|resolution]] 1.46Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[6qq8]] is a 1 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/~~Aeqvi Aeqvi~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6QQ8 OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=6QQ8 FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[6qq8]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Aequorea_victoria Aequorea victoria]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6QQ8 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=6QQ8 FirstGlance]. <br>
-	</td></tr><tr id='~~NonStdRes~~'><td class="sblockLbl"><b>[[~~Non~~-~~Standard_Residue~~\|~~NonStd Res~~:]]</b></td><td class="sblockDat"><scene name='pdbligand=CRF:[(4Z)-2-[(1R,2R)-1-AMINO-2-HYDROXYPROPYL]-4-(1H-INDOL-3-YLMETHYLIDENE)-5-OXO-4,5-DIHYDRO-1H-IMIDAZOL-1-YL]ACETIC+ACID'>CRF</scene>~~</td></tr>~~	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 1.46Å</td></tr>
-	~~<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2wso\|2wso]], [[5oxc\|5oxc]]</td></tr>~~	+	<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CRF:[(4Z)-2-[(1R,2R)-1-AMINO-2-HYDROXYPROPYL]-4-(1H-INDOL-3-YLMETHYLIDENE)-5-OXO-4,5-DIHYDRO-1H-IMIDAZOL-1-YL]ACETIC+ACID'>CRF</scene></td></tr>
-	~~<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">GFP ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=6100 AEQVI])~~</td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=6qq8 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6qq8 OCA], [https://pdbe.org/6qq8 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=6qq8 RCSB], [https://www.ebi.ac.uk/pdbsum/6qq8 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=6qq8 ProSAT]</span></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=6qq8 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6qq8 OCA], [~~http~~://pdbe.org/6qq8 PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=6qq8 RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/6qq8 PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=6qq8 ProSAT]</span></td></tr>	+
	</table>		</table>
	== Function ==		== Function ==
-	[~~[http~~://www.uniprot.org/uniprot/GFP_AEQVI GFP_AEQVI]] Energy-transfer acceptor. Its role is to transduce the blue chemiluminescence of the protein aequorin into green fluorescent light by energy transfer. Fluoresces in vivo upon receiving energy from the Ca(2+)-activated photoprotein aequorin.	+	[https://www.uniprot.org/uniprot/GFP_AEQVI GFP_AEQVI] Energy-transfer acceptor. Its role is to transduce the blue chemiluminescence of the protein aequorin into green fluorescent light by energy transfer. Fluoresces in vivo upon receiving energy from the Ca(2+)-activated photoprotein aequorin.
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
	== Publication Abstract from PubMed ==		== Publication Abstract from PubMed ==
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	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: ~~Aeqvi~~]]	+	[[Category: Aequorea victoria]]
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: Aumonier, S]]	+	[[Category: Aumonier S]]
-	[[Category: Gotthard, G]]	+	[[Category: Gotthard G]]
-	[[Category: Royant, A]]	+	[[Category: Royant A]]
-	~~[[Category: Cerulean]]~~	+
-	~~[[Category: Fluorescent protein]]~~	+
-	~~[[Category: Hydrogen atom]]~~	+
-	~~[[Category: Tryptophan-based chromophore~~]]	+

OCA at 07:04, 31 July 2019

OCA — Wed, 31 Jul 2019 07:04:56 GMT

←Older revision		Revision as of 07:04, 31 July 2019
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	<StructureSection load='6qq8' size='340' side='right'caption='[[6qq8]], [[Resolution\|resolution]] 1.46Å' scene=''>		<StructureSection load='6qq8' size='340' side='right'caption='[[6qq8]], [[Resolution\|resolution]] 1.46Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[6qq8]] is a 1 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6QQ8 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6QQ8 FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[6qq8]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Aeqvi Aeqvi]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6QQ8 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6QQ8 FirstGlance]. <br>
	</td></tr><tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=CRF:[(4Z)-2-[(1R,2R)-1-AMINO-2-HYDROXYPROPYL]-4-(1H-INDOL-3-YLMETHYLIDENE)-5-OXO-4,5-DIHYDRO-1H-IMIDAZOL-1-YL]ACETIC+ACID'>CRF</scene></td></tr>		</td></tr><tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=CRF:[(4Z)-2-[(1R,2R)-1-AMINO-2-HYDROXYPROPYL]-4-(1H-INDOL-3-YLMETHYLIDENE)-5-OXO-4,5-DIHYDRO-1H-IMIDAZOL-1-YL]ACETIC+ACID'>CRF</scene></td></tr>
	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2wso\|2wso]], [[5oxc\|5oxc]]</td></tr>		<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2wso\|2wso]], [[5oxc\|5oxc]]</td></tr>
		+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">GFP ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=6100 AEQVI])</td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6qq8 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6qq8 OCA], [http://pdbe.org/6qq8 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6qq8 RCSB], [http://www.ebi.ac.uk/pdbsum/6qq8 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6qq8 ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6qq8 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6qq8 OCA], [http://pdbe.org/6qq8 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6qq8 RCSB], [http://www.ebi.ac.uk/pdbsum/6qq8 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6qq8 ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
	[[http://www.uniprot.org/uniprot/GFP_AEQVI GFP_AEQVI]] Energy-transfer acceptor. Its role is to transduce the blue chemiluminescence of the protein aequorin into green fluorescent light by energy transfer. Fluoresces in vivo upon receiving energy from the Ca(2+)-activated photoprotein aequorin.		[[http://www.uniprot.org/uniprot/GFP_AEQVI GFP_AEQVI]] Energy-transfer acceptor. Its role is to transduce the blue chemiluminescence of the protein aequorin into green fluorescent light by energy transfer. Fluoresces in vivo upon receiving energy from the Ca(2+)-activated photoprotein aequorin.
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	Carrying out macromolecular crystallography (MX) experiments at cryogenic temperatures significantly slows the rate of global radiation damage, thus facilitating the solution of high-resolution crystal structures of macromolecules. However, cryo-MX experiments suffer from the early onset of so-called specific radiation damage that affects certain amino-acid residues and, in particular, the active sites of many proteins. Here, a series of MX experiments are described which suggest that specific and global radiation damage are much less decoupled at room temperature than they are at cryogenic temperatures. The results reported here demonstrate the interest in reviving the practice of collecting MX diffraction data at room temperature and allow structural biologists to favourably envisage the development of time-resolved MX experiments at synchrotron sources.
		+
		+	Specific radiation damage is a lesser concern at room temperature.,Gotthard G, Aumonier S, De Sanctis D, Leonard G, von Stetten D, Royant A IUCrJ. 2019 Jun 12;6(Pt 4):665-680. doi: 10.1107/S205225251900616X. eCollection, 2019 Jul 1. PMID:31316810<ref>PMID:31316810</ref>
		+
		+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
		+	</div>
		+	<div class="pdbe-citations 6qq8" style="background-color:#fffaf0;"></div>
		+
		+	==See Also==
		+	*[[Green Fluorescent Protein 3D structures\|Green Fluorescent Protein 3D structures]]
		+	== References ==
		+	<references/>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
		+	[[Category: Aeqvi]]
	[[Category: Large Structures]]		[[Category: Large Structures]]
	[[Category: Aumonier, S]]		[[Category: Aumonier, S]]

OCA at 06:15, 19 June 2019

OCA — Wed, 19 Jun 2019 06:15:12 GMT

←Older revision		Revision as of 06:15, 19 June 2019
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-	'''Unreleased structure'''

-	~~The entry~~ 6qq8 is ~~ON HOLD until Paper Publication~~	+	==Cryogenic temperature structure of the fluorescent protein Cerulean recorded after an accumulated dose of 290 kGy==
-		+	<StructureSection load='6qq8' size='340' side='right'caption='[[6qq8]], [[Resolution\|resolution]] 1.46Å' scene=''>
-	~~Authors~~:	+	== Structural highlights ==
-		+	<table><tr><td colspan='2'>[[6qq8]] is a 1 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6QQ8 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6QQ8 FirstGlance]. <br>
-	~~Description~~:	+	</td></tr><tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=CRF:[(4Z)-2-[(1R,2R)-1-AMINO-2-HYDROXYPROPYL]-4-(1H-INDOL-3-YLMETHYLIDENE)-5-OXO-4,5-DIHYDRO-1H-IMIDAZOL-1-YL]ACETIC+ACID'>CRF</scene></td></tr>
-	[[Category: ~~Unreleased~~ Structures]]	+	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2wso\|2wso]], [[5oxc\|5oxc]]</td></tr>
		+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6qq8 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6qq8 OCA], [http://pdbe.org/6qq8 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6qq8 RCSB], [http://www.ebi.ac.uk/pdbsum/6qq8 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6qq8 ProSAT]</span></td></tr>
		+	</table>
		+	== Function ==
		+	[[http://www.uniprot.org/uniprot/GFP_AEQVI GFP_AEQVI]] Energy-transfer acceptor. Its role is to transduce the blue chemiluminescence of the protein aequorin into green fluorescent light by energy transfer. Fluoresces in vivo upon receiving energy from the Ca(2+)-activated photoprotein aequorin.
		+	__TOC__
		+	</StructureSection>
		+	[[Category: Large Structures]]
		+	[[Category: Aumonier, S]]
		+	[[Category: Gotthard, G]]
		+	[[Category: Royant, A]]
		+	[[Category: Cerulean]]
		+	[[Category: Fluorescent protein]]
		+	[[Category: Hydrogen atom]]
		+	[[Category: Tryptophan-based chromophore]]

OCA at 21:15, 5 June 2019

OCA — Wed, 05 Jun 2019 21:15:54 GMT

←Older revision		Revision as of 21:15, 5 June 2019
Line 1:		Line 1:
	'''Unreleased structure'''		'''Unreleased structure'''

-	The entry 6qq8 is ON HOLD	+	The entry 6qq8 is ON HOLD until Paper Publication

	Authors:		Authors:

OCA: Protected "6qq8" [edit=sysop:move=sysop]

OCA — Wed, 27 Feb 2019 13:56:01 GMT

Protected "6qq8" [edit=sysop:move=sysop]

←Older revision

Revision as of 13:56, 27 February 2019

OCA: New page: '''Unreleased structure''' The entry 6qq8 is ON HOLD Authors: Description: Category: Unreleased Structures

OCA — Wed, 27 Feb 2019 13:56:00 GMT

New page: '''Unreleased structure''' The entry 6qq8 is ON HOLD Authors: Description: Category: Unreleased Structures

New page

'''Unreleased structure'''

The entry 6qq8 is ON HOLD

Authors:

Description:
[[Category: Unreleased Structures]]