6qy2 - Revision history

OCA at 12:10, 24 January 2024

OCA — Wed, 24 Jan 2024 12:10:55 GMT

←Older revision		Revision as of 12:10, 24 January 2024
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	<StructureSection load='6qy2' size='340' side='right'caption='[[6qy2]], [[Resolution\|resolution]] 1.70Å' scene=''>		<StructureSection load='6qy2' size='340' side='right'caption='[[6qy2]], [[Resolution\|resolution]] 1.70Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[6qy2]] is a 1 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/Gallus_gallus Gallus gallus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6QY2 OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=6QY2 FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[6qy2]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Gallus_gallus Gallus gallus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6QY2 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=6QY2 FirstGlance]. <br>
-	</td></tr><tr id='~~ligand~~'><td class="sblockLbl"><b>[[~~Ligand~~\|~~Ligands~~:]]</b></td><td class="sblockDat"~~><scene name~~=~~'pdbligand=CL:CHLORIDE+ION'>CL</scene~~>, ~~<scene name='pdbligand=EDO:~~1~~,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene>~~</td></tr>	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 1.7Å</td></tr>
-	<tr id='~~related~~'><td class="sblockLbl"><b>[[~~Related_structure~~\|~~Related~~:]]</b></td><td class="sblockDat">~~[[6qxv\|6qxv]], [[6qxw\|6qxw]], [[6qxx\|6qxx]], [[6qxy\|6qxy]], [[6qy0\|6qy0]], [[6qy1\|6qy1]]~~<~~/td~~></tr>	+	<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene></td></tr>
-	<~~tr id~~='~~activity'><td class~~=~~"sblockLbl"><b>Activity~~:~~</b~~></td><~~td class~~=~~"sblockDat"><span class~~=~~'plainlinks~~'>~~[http://en.wikipedia.org/wiki/Lysozyme Lysozyme], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.2.1.17 3.2.1.17]~~ </~~span~~></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=6qy2 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6qy2 OCA], [https://pdbe.org/6qy2 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=6qy2 RCSB], [https://www.ebi.ac.uk/pdbsum/6qy2 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=6qy2 ProSAT]</span></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=6qy2 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6qy2 OCA], [~~http~~://pdbe.org/6qy2 PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=6qy2 RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/6qy2 PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=6qy2 ProSAT]</span></td></tr>	+
	</table>		</table>
	== Function ==		== Function ==
-	[~~[http~~://www.uniprot.org/uniprot/LYSC_CHICK LYSC_CHICK]] Lysozymes have primarily a bacteriolytic function; those in tissues and body fluids are associated with the monocyte-macrophage system and enhance the activity of immunoagents. Has bacteriolytic activity against M.luteus.<ref>PMID:22044478</ref>	+	[https://www.uniprot.org/uniprot/LYSC_CHICK LYSC_CHICK] Lysozymes have primarily a bacteriolytic function; those in tissues and body fluids are associated with the monocyte-macrophage system and enhance the activity of immunoagents. Has bacteriolytic activity against M.luteus.<ref>PMID:22044478</ref>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
	== Publication Abstract from PubMed ==		== Publication Abstract from PubMed ==
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	</div>		</div>
	<div class="pdbe-citations 6qy2" style="background-color:#fffaf0;"></div>		<div class="pdbe-citations 6qy2" style="background-color:#fffaf0;"></div>
		+
		+	==See Also==
		+	*[[Lysozyme 3D structures\|Lysozyme 3D structures]]
	== References ==		== References ==
	<references/>		<references/>
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	[[Category: Gallus gallus]]		[[Category: Gallus gallus]]
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	~~[[Category: Lysozyme]]~~	+	[[Category: Lieske J]]
-	[[Category: Lieske, J]]	+	[[Category: Meents A]]
-	[[Category: Meents, A]]	+	[[Category: Tolstikova A]]
-	[[Category: Tolstikova, A]]	+
-	~~[[Category: Fixed-target]]~~	+
-	~~[[Category: Hydrolase]]~~	+
-	~~[[Category: Pink beam]]~~	+
-	~~[[Category: Serial crystallography~~]]	+

OCA at 06:23, 10 October 2019

OCA — Thu, 10 Oct 2019 06:23:03 GMT

←Older revision		Revision as of 06:23, 10 October 2019
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-	'''Unreleased structure'''

-	~~The entry~~ 6qy2 is ~~ON HOLD~~ ~~until Paper~~ Publication	+	==Pink beam serial crystallography: Lysozyme, 5 us exposure, 750 patterns merged==
		+	<StructureSection load='6qy2' size='340' side='right'caption='[[6qy2]], [[Resolution\|resolution]] 1.70Å' scene=''>
		+	== Structural highlights ==
		+	<table><tr><td colspan='2'>[[6qy2]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Gallus_gallus Gallus gallus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6QY2 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6QY2 FirstGlance]. <br>
		+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene></td></tr>
		+	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[6qxv\|6qxv]], [[6qxw\|6qxw]], [[6qxx\|6qxx]], [[6qxy\|6qxy]], [[6qy0\|6qy0]], [[6qy1\|6qy1]]</td></tr>
		+	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Lysozyme Lysozyme], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.2.1.17 3.2.1.17] </span></td></tr>
		+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6qy2 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6qy2 OCA], [http://pdbe.org/6qy2 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6qy2 RCSB], [http://www.ebi.ac.uk/pdbsum/6qy2 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6qy2 ProSAT]</span></td></tr>
		+	</table>
		+	== Function ==
		+	[[http://www.uniprot.org/uniprot/LYSC_CHICK LYSC_CHICK]] Lysozymes have primarily a bacteriolytic function; those in tissues and body fluids are associated with the monocyte-macrophage system and enhance the activity of immunoagents. Has bacteriolytic activity against M.luteus.<ref>PMID:22044478</ref>
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	Reliable sample delivery and efficient use of limited beam time have remained bottlenecks for serial crystallography (SX). Using a high-intensity polychromatic X-ray beam in combination with a newly developed charge-integrating JUNGFRAU detector, we have applied the method of fixed-target SX to collect data at a rate of 1 kHz at a synchrotron-radiation facility. According to our data analysis for the given experimental conditions, only about 3 000 diffraction patterns are required for a high-quality diffraction dataset. With indexing rates of up to 25%, recording of such a dataset takes less than 30 s.

-	~~Authors: Lieske, J~~., Tolstikova, A., ~~Meents~~, A.	+	1 kHz fixed-target serial crystallography using a multilayer monochromator and an integrating pixel detector.,Tolstikova A, Levantino M, Yefanov O, Hennicke V, Fischer P, Meyer J, Mozzanica A, Redford S, Crosas E, Opara NL, Barthelmess M, Lieske J, Oberthuer D, Wator E, Mohacsi I, Wulff M, Schmitt B, Chapman HN, Meents A IUCrJ. 2019 Aug 17;6(Pt 5):927-937. doi: 10.1107/S205225251900914X. eCollection, 2019 Sep 1. PMID:31576225<ref>PMID:31576225</ref>

-	~~Description~~: ~~Pink beam serial crystallography~~: ~~Lysozyme, 5 us exposure, 750 patterns merged~~	+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
-	[[Category: ~~Unreleased~~ Structures]]	+	</div>
		+	<div class="pdbe-citations 6qy2" style="background-color:#fffaf0;"></div>
		+	== References ==
		+	<references/>
		+	__TOC__
		+	</StructureSection>
		+	[[Category: Gallus gallus]]
		+	[[Category: Large Structures]]
		+	[[Category: Lysozyme]]
	[[Category: Lieske, J]]		[[Category: Lieske, J]]
-	[[Category: Tolstikova, A]]
	[[Category: Meents, A]]		[[Category: Meents, A]]
		+	[[Category: Tolstikova, A]]
		+	[[Category: Fixed-target]]
		+	[[Category: Hydrolase]]
		+	[[Category: Pink beam]]
		+	[[Category: Serial crystallography]]

OCA at 06:07, 20 March 2019

OCA — Wed, 20 Mar 2019 06:07:48 GMT

←Older revision		Revision as of 06:07, 20 March 2019
Line 1:		Line 1:
	'''Unreleased structure'''		'''Unreleased structure'''

-	The entry 6qy2 is ON HOLD	+	The entry 6qy2 is ON HOLD until Paper Publication

	Authors: Lieske, J., Tolstikova, A., Meents, A.		Authors: Lieske, J., Tolstikova, A., Meents, A.

OCA: Protected "6qy2" [edit=sysop:move=sysop]

OCA — Wed, 13 Mar 2019 10:33:34 GMT

Protected "6qy2" [edit=sysop:move=sysop]

←Older revision

Revision as of 10:33, 13 March 2019

OCA: New page: '''Unreleased structure''' The entry 6qy2 is ON HOLD Authors: Lieske, J., Tolstikova, A., Meents, A. Description: Pink beam serial crystallography: Lysozyme, 5 us exposure, 750 pattern...

OCA — Wed, 13 Mar 2019 10:33:32 GMT

New page: '''Unreleased structure''' The entry 6qy2 is ON HOLD Authors: Lieske, J., Tolstikova, A., Meents, A. Description: Pink beam serial crystallography: Lysozyme, 5 us exposure, 750 pattern...

New page

'''Unreleased structure'''

The entry 6qy2 is ON HOLD

Authors: Lieske, J., Tolstikova, A., Meents, A.

Description: Pink beam serial crystallography: Lysozyme, 5 us exposure, 750 patterns merged
[[Category: Unreleased Structures]]
[[Category: Lieske, J]]
[[Category: Tolstikova, A]]
[[Category: Meents, A]]