6r2t - Revision history

OCA at 12:13, 24 January 2024

OCA — Wed, 24 Jan 2024 12:13:52 GMT

←Older revision		Revision as of 12:13, 24 January 2024
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	<StructureSection load='6r2t' size='340' side='right'caption='[[6r2t]], [[Resolution\|resolution]] 1.29Å' scene=''>		<StructureSection load='6r2t' size='340' side='right'caption='[[6r2t]], [[Resolution\|resolution]] 1.29Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[6r2t]] is a 1 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6R2T OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=6R2T FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[6r2t]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Aspergillus_niger Aspergillus niger]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6R2T OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=6R2T FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=4LU:1-DEOXY-5-O-PHOSPHONO-1-(3,3,4,5-TETRAMETHYL-9,11-DIOXO-2,3,8,9,10,11-HEXAHYDRO-7H-QUINOLINO[1,8-FG]PTERIDIN-12-IUM-7-YL)-D-RIBITOL'>4LU</scene>, <scene name='pdbligand=JQ8:phenylpropiolic+acid'>JQ8</scene>, <scene name='pdbligand=K:POTASSIUM+ION'>K</scene>, <scene name='pdbligand=MN:MANGANESE+(II)+ION'>MN</scene~~></td></tr>~~	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 1.29Å</td></tr>
-	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Phenacrylate_decarboxylase Phenacrylate decarboxylase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=4.1.1.102 4.1.1.102] </span></td></tr>	+	<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=4LU:1-DEOXY-5-O-PHOSPHONO-1-(3,3,4,5-TETRAMETHYL-9,11-DIOXO-2,3,8,9,10,11-HEXAHYDRO-7H-QUINOLINO[1,8-FG]PTERIDIN-12-IUM-7-YL)-D-RIBITOL'>4LU</scene>, <scene name='pdbligand=JQ8:phenylpropiolic+acid'>JQ8</scene>, <scene name='pdbligand=K:POTASSIUM+ION'>K</scene>, <scene name='pdbligand=MN:MANGANESE+(II)+ION'>MN</scene></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=6r2t FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6r2t OCA], [~~http~~://pdbe.org/6r2t PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=6r2t RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/6r2t PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=6r2t ProSAT]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=6r2t FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6r2t OCA], [https://pdbe.org/6r2t PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=6r2t RCSB], [https://www.ebi.ac.uk/pdbsum/6r2t PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=6r2t ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
-	[~~[http~~://www.uniprot.org/uniprot/FDC1_ASPNC FDC1_ASPNC]] Catalyzes the reversible decarboxylation of aromatic carboxylic acids like ferulic acid, p-coumaric acid or cinnamic acid, producing the corresponding vinyl derivatives 4-vinylphenol, 4-vinylguaiacol, and styrene, respectively, which play the role of aroma metabolites.[HAMAP-Rule:MF_03196]<ref>PMID:26083754</ref>	+	[https://www.uniprot.org/uniprot/FDC1_ASPNC FDC1_ASPNC] Catalyzes the reversible decarboxylation of aromatic carboxylic acids like ferulic acid, p-coumaric acid or cinnamic acid, producing the corresponding vinyl derivatives 4-vinylphenol, 4-vinylguaiacol, and styrene, respectively, which play the role of aroma metabolites.[HAMAP-Rule:MF_03196]<ref>PMID:26083754</ref>
	== References ==		== References ==
	<references/>		<references/>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
		+	[[Category: Aspergillus niger]]
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	~~[[Category: Phenacrylate decarboxylase]]~~	+	[[Category: Bailey SS]]
-	[[Category: Bailey~~, S S~~]]	+	[[Category: Leys D]]
-	[[Category: Leys, D]]	+
-	~~[[Category: Lyase]]~~	+
-	~~[[Category: Prfmn binding]]~~	+
-	~~[[Category: Ubid~~]]	+

OCA at 15:37, 28 August 2019

OCA — Wed, 28 Aug 2019 15:37:52 GMT

←Older revision		Revision as of 15:37, 28 August 2019
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-	'''Unreleased structure'''

-	~~The entry 6r2t is ON HOLD until Paper Publication~~	+	==Aspergillus niger ferulic acid decarboxylase (Fdc) in complex with prFMN (purified in the radical form) and phenylpropiolic acid==
-		+	<StructureSection load='6r2t' size='340' side='right'caption='[[6r2t]], [[Resolution\|resolution]] 1.29Å' scene=''>
-	~~Authors: Bailey, S.S., Leys, D.~~	+	== Structural highlights ==
-		+	<table><tr><td colspan='2'>[[6r2t]] is a 1 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6R2T OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6R2T FirstGlance]. <br>
-	~~Description:~~ Aspergillus niger ferulic acid decarboxylase (Fdc) in complex with prFMN (purified in the radical form) and phenylpropiolic acid	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=4LU:1-DEOXY-5-O-PHOSPHONO-1-(3,3,4,5-TETRAMETHYL-9,11-DIOXO-2,3,8,9,10,11-HEXAHYDRO-7H-QUINOLINO[1,8-FG]PTERIDIN-12-IUM-7-YL)-D-RIBITOL'>4LU</scene>, <scene name='pdbligand=JQ8:phenylpropiolic+acid'>JQ8</scene>, <scene name='pdbligand=K:POTASSIUM+ION'>K</scene>, <scene name='pdbligand=MN:MANGANESE+(II)+ION'>MN</scene></td></tr>
-	[[Category: ~~Unreleased~~ Structures]]	+	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Phenacrylate_decarboxylase Phenacrylate decarboxylase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=4.1.1.102 4.1.1.102] </span></td></tr>
		+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6r2t FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6r2t OCA], [http://pdbe.org/6r2t PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6r2t RCSB], [http://www.ebi.ac.uk/pdbsum/6r2t PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6r2t ProSAT]</span></td></tr>
		+	</table>
		+	== Function ==
		+	[[http://www.uniprot.org/uniprot/FDC1_ASPNC FDC1_ASPNC]] Catalyzes the reversible decarboxylation of aromatic carboxylic acids like ferulic acid, p-coumaric acid or cinnamic acid, producing the corresponding vinyl derivatives 4-vinylphenol, 4-vinylguaiacol, and styrene, respectively, which play the role of aroma metabolites.[HAMAP-Rule:MF_03196]<ref>PMID:26083754</ref>
		+	== References ==
		+	<references/>
		+	__TOC__
		+	</StructureSection>
		+	[[Category: Large Structures]]
		+	[[Category: Phenacrylate decarboxylase]]
		+	[[Category: Bailey, S S]]
	[[Category: Leys, D]]		[[Category: Leys, D]]
-	[[Category: ~~Bailey, S.S~~]]	+	[[Category: Lyase]]
		+	[[Category: Prfmn binding]]
		+	[[Category: Ubid]]

OCA at 05:37, 10 April 2019

OCA — Wed, 10 Apr 2019 05:37:41 GMT

←Older revision		Revision as of 05:37, 10 April 2019
Line 1:		Line 1:
	'''Unreleased structure'''		'''Unreleased structure'''

-	The entry 6r2t is ON HOLD	+	The entry 6r2t is ON HOLD until Paper Publication

	Authors: Bailey, S.S., Leys, D.		Authors: Bailey, S.S., Leys, D.

-	Description: Aspergillus niger ~~ferric~~ acid decarboxylase (Fdc) in complex with prFMN (purified in the radical form) and phenylpropiolic acid	+	Description: Aspergillus niger ferulic acid decarboxylase (Fdc) in complex with prFMN (purified in the radical form) and phenylpropiolic acid
	[[Category: Unreleased Structures]]		[[Category: Unreleased Structures]]
	[[Category: Leys, D]]		[[Category: Leys, D]]
	[[Category: Bailey, S.S]]		[[Category: Bailey, S.S]]

OCA: Protected "6r2t" [edit=sysop:move=sysop]

OCA — Wed, 27 Mar 2019 05:14:00 GMT

Protected "6r2t" [edit=sysop:move=sysop]

←Older revision

Revision as of 05:14, 27 March 2019

OCA: New page: '''Unreleased structure''' The entry 6r2t is ON HOLD Authors: Bailey, S.S., Leys, D. Description: Aspergillus niger ferric acid decarboxylase (Fdc) in complex with prFMN (purified in t...

OCA — Wed, 27 Mar 2019 05:13:59 GMT

New page: '''Unreleased structure''' The entry 6r2t is ON HOLD Authors: Bailey, S.S., Leys, D. Description: Aspergillus niger ferric acid decarboxylase (Fdc) in complex with prFMN (purified in t...

New page

'''Unreleased structure'''

The entry 6r2t is ON HOLD

Authors: Bailey, S.S., Leys, D.

Description: Aspergillus niger ferric acid decarboxylase (Fdc) in complex with prFMN (purified in the radical form) and phenylpropiolic acid
[[Category: Unreleased Structures]]
[[Category: Leys, D]]
[[Category: Bailey, S.S]]