6rgm - Revision history

OCA at 12:20, 24 January 2024

OCA — Wed, 24 Jan 2024 12:20:03 GMT

←Older revision		Revision as of 12:20, 24 January 2024
Line 3:		Line 3:
	<StructureSection load='6rgm' size='340' side='right'caption='[[6rgm]], [[Resolution\|resolution]] 1.50Å' scene=''>		<StructureSection load='6rgm' size='340' side='right'caption='[[6rgm]], [[Resolution\|resolution]] 1.50Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[6rgm]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/~~Aspfl Aspfl~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6RGM OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=6RGM FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[6rgm]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Aspergillus_flavus Aspergillus flavus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6RGM OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=6RGM FirstGlance]. <br>
-	</td></tr><tr id='~~ligand~~'><td class="sblockLbl"><b>[[~~Ligand~~\|~~Ligands~~:]]</b></td><td class="sblockDat" id="~~ligandDat~~">~~<scene name='pdbligand=ACT:ACETATE+ION'>ACT</scene>, <scene name='pdbligand=AZA:8~~-~~AZAXANTHINE'>AZA</scene>~~, ~~<scene name='pdbligand=KR:KRYPTON'>KR</scene>, <scene name='pdbligand=MPD:(4S)-2-METHYL-2,4-PENTANEDIOL'>MPD</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene>~~</td></tr>	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 1.5Å</td></tr>
-	<tr id='~~NonStdRes~~'><td class="sblockLbl"><b>[[~~Non-Standard_Residue~~\|~~NonStd Res~~:]]</b></td><td class="sblockDat"><scene name='pdbligand=ACE:ACETYL+GROUP'>ACE</scene><~~/td></tr>~~	+	<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ACE:ACETYL+GROUP'>ACE</scene>, <scene name='pdbligand=ACT:ACETATE+ION'>ACT</scene>, <scene name='pdbligand=AZA:8-AZAXANTHINE'>AZA</scene>, <scene name='pdbligand=KR:KRYPTON'>KR</scene>, <scene name='pdbligand=MPD:(4S)-2-METHYL-2,4-PENTANEDIOL'>MPD</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene></td></tr>
-	~~<tr id~~='~~related'><td class~~=~~"sblockLbl"><b>[[Related_structure\|Related~~:~~]]</b~~></td><~~td class~~=~~"sblockDat"><div style~~=~~'overflow~~: ~~auto; max~~-~~height: 3em;~~'>~~[[6ic1\|6ic1]]~~</~~div~~><~~/td></tr>~~	+
-	~~<tr id~~='~~gene'><td class~~=~~"sblockLbl"><b>[[Gene\|Gene~~:~~]]</b~~></td><~~td class~~=~~"sblockDat">uaZ, uox~~ (~~[https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=5059 ASPFL]~~)~~</td~~></tr>	+
-	<~~tr id~~='~~activity'><td class~~=~~"sblockLbl"><b>Activity~~:~~</b></td><td class="sblockDat"><span class='plainlinks~~'>~~[https://en.wikipedia.org/wiki/Factor_independent_urate_hydroxylase Factor independent urate hydroxylase], with EC number [https://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.7.3.3 1.7.3.3]~~ </~~span~~></td></tr>	+
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=6rgm FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6rgm OCA], [https://pdbe.org/6rgm PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=6rgm RCSB], [https://www.ebi.ac.uk/pdbsum/6rgm PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=6rgm ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=6rgm FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6rgm OCA], [https://pdbe.org/6rgm PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=6rgm RCSB], [https://www.ebi.ac.uk/pdbsum/6rgm PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=6rgm ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
-	[[https://www.uniprot.org/uniprot/URIC_ASPFL URIC_ASPFL]] Catalyzes the oxidation of uric acid to 5-hydroxyisourate, which is further processed to form (S)-allantoin.	+	[https://www.uniprot.org/uniprot/URIC_ASPFL URIC_ASPFL] Catalyzes the oxidation of uric acid to 5-hydroxyisourate, which is further processed to form (S)-allantoin.
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: Aspfl]]
-	[[Category: Factor independent urate hydroxylase]]
-	[[Category: Large Structures]]
-	[[Category: Carpentier, P]]
-	[[Category: Prange, T]]
-	[[Category: H, N Colloc]]
	[[Category: Aspergillus flavus]]		[[Category: Aspergillus flavus]]
-	[[Category: ~~High pressure~~]]	+	[[Category: Large Structures]]
-	[[Category: ~~Homotetramer~~]]	+	[[Category: Carpentier P]]
-	[[Category: ~~Krypton~~]]	+	[[Category: Colloc'h N]]
-	[[Category: ~~Oxidoreductase]]~~	+	[[Category: Prange T]]
-	~~[[Category: Purine metabolism~~]]	+

OCA at 07:29, 9 February 2022

OCA — Wed, 09 Feb 2022 07:29:12 GMT

←Older revision		Revision as of 07:29, 9 February 2022
Line 1:		Line 1:

	==urate oxidase under 130 bar of krypton==		==urate oxidase under 130 bar of krypton==
-	<StructureSection load='6rgm' size='340' side='right'caption='[[6rgm]]' scene=''>	+	<StructureSection load='6rgm' size='340' side='right'caption='[[6rgm]], [[Resolution\|resolution]] 1.50Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6RGM OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://proteopedia.org/fgij/fg.htm?mol=6RGM FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[6rgm]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Aspfl Aspfl]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6RGM OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=6RGM FirstGlance]. <br>
-	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://proteopedia.org/fgij/fg.htm?mol=6rgm FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6rgm OCA], [~~http~~://pdbe.org/6rgm PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=6rgm RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/6rgm PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=6rgm ProSAT]</span></td></tr>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ACT:ACETATE+ION'>ACT</scene>, <scene name='pdbligand=AZA:8-AZAXANTHINE'>AZA</scene>, <scene name='pdbligand=KR:KRYPTON'>KR</scene>, <scene name='pdbligand=MPD:(4S)-2-METHYL-2,4-PENTANEDIOL'>MPD</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene></td></tr>
		+	<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=ACE:ACETYL+GROUP'>ACE</scene></td></tr>
		+	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[6ic1\|6ic1]]</div></td></tr>
		+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">uaZ, uox ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=5059 ASPFL])</td></tr>
		+	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[https://en.wikipedia.org/wiki/Factor_independent_urate_hydroxylase Factor independent urate hydroxylase], with EC number [https://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.7.3.3 1.7.3.3] </span></td></tr>
		+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=6rgm FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6rgm OCA], [https://pdbe.org/6rgm PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=6rgm RCSB], [https://www.ebi.ac.uk/pdbsum/6rgm PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=6rgm ProSAT]</span></td></tr>
	</table>		</table>
		+	== Function ==
		+	[[https://www.uniprot.org/uniprot/URIC_ASPFL URIC_ASPFL]] Catalyzes the oxidation of uric acid to 5-hydroxyisourate, which is further processed to form (S)-allantoin.
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
		+	[[Category: Aspfl]]
		+	[[Category: Factor independent urate hydroxylase]]
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: Carpentier P]]	+	[[Category: Carpentier, P]]
-	[[Category: ~~Colloc'h~~ N]]	+	[[Category: Prange, T]]
-	[[Category: ~~Prange T~~]]	+	[[Category: H, N Colloc]]
		+	[[Category: Aspergillus flavus]]
		+	[[Category: High pressure]]
		+	[[Category: Homotetramer]]
		+	[[Category: Krypton]]
		+	[[Category: Oxidoreductase]]
		+	[[Category: Purine metabolism]]

OCA at 05:29, 13 May 2020

OCA — Wed, 13 May 2020 05:29:09 GMT

←Older revision		Revision as of 05:29, 13 May 2020
Line 1:		Line 1:
-	'''Unreleased structure'''

-	~~The entry~~ 6rgm ~~is ON HOLD until Paper Publication~~	+	==urate oxidase under 130 bar of krypton==
-		+	<StructureSection load='6rgm' size='340' side='right'caption='[[6rgm]]' scene=''>
-	~~Authors~~: ~~Prange~~, T., ~~Colloc'h~~, N., ~~Carpentier~~, P.	+	== Structural highlights ==
-		+	<table><tr><td colspan='2'>Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6RGM OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=6RGM FirstGlance]. <br>
-	~~Description: urate oxidase under 130 bar of krypton~~	+	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=6rgm FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6rgm OCA], [http://pdbe.org/6rgm PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6rgm RCSB], [http://www.ebi.ac.uk/pdbsum/6rgm PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6rgm ProSAT]</span></td></tr>
-	[[Category: ~~Unreleased~~ Structures]]	+	</table>
-	[[Category: ~~Colloc'H, N~~]]	+	__TOC__
-	[[Category: ~~Carpentier, P~~]]	+	</StructureSection>
-	[[Category: Prange, T]]	+	[[Category: Large Structures]]
		+	[[Category: Carpentier P]]
		+	[[Category: Colloc'h N]]
		+	[[Category: Prange T]]

OCA at 05:56, 21 May 2019

OCA — Tue, 21 May 2019 05:56:41 GMT

←Older revision		Revision as of 05:56, 21 May 2019
Line 1:		Line 1:
	'''Unreleased structure'''		'''Unreleased structure'''

-	The entry 6rgm is ON HOLD	+	The entry 6rgm is ON HOLD until Paper Publication

	Authors: Prange, T., Colloc'h, N., Carpentier, P.		Authors: Prange, T., Colloc'h, N., Carpentier, P.
Line 8:		Line 8:
	[[Category: Unreleased Structures]]		[[Category: Unreleased Structures]]
	[[Category: Colloc'H, N]]		[[Category: Colloc'H, N]]
-	[[Category: Prange, T]]
	[[Category: Carpentier, P]]		[[Category: Carpentier, P]]
		+	[[Category: Prange, T]]

OCA: Protected "6rgm" [edit=sysop:move=sysop]

OCA — Wed, 24 Apr 2019 05:17:58 GMT

Protected "6rgm" [edit=sysop:move=sysop]

←Older revision

Revision as of 05:17, 24 April 2019

OCA: New page: '''Unreleased structure''' The entry 6rgm is ON HOLD Authors: Prange, T., Colloc'h, N., Carpentier, P. Description: urate oxidase under 130 bar of krypton [[Category: Unreleased Struct...

OCA — Wed, 24 Apr 2019 05:17:57 GMT

New page: '''Unreleased structure''' The entry 6rgm is ON HOLD Authors: Prange, T., Colloc'h, N., Carpentier, P. Description: urate oxidase under 130 bar of krypton [[Category: Unreleased Struct...

New page

'''Unreleased structure'''

The entry 6rgm is ON HOLD

Authors: Prange, T., Colloc'h, N., Carpentier, P.

Description: urate oxidase under 130 bar of krypton
[[Category: Unreleased Structures]]
[[Category: Colloc'H, N]]
[[Category: Prange, T]]
[[Category: Carpentier, P]]