6rjk - Revision history

OCA at 12:21, 24 January 2024

OCA — Wed, 24 Jan 2024 12:21:43 GMT

←Older revision		Revision as of 12:21, 24 January 2024
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	<StructureSection load='6rjk' size='340' side='right'caption='[[6rjk]], [[Resolution\|resolution]] 1.92Å' scene=''>		<StructureSection load='6rjk' size='340' side='right'caption='[[6rjk]], [[Resolution\|resolution]] 1.92Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[6rjk]] is a 2 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/~~Agrobacterium_tumefaciens_a6~~ Agrobacterium tumefaciens a6]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6RJK OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=6RJK FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[6rjk]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Agrobacterium_tumefaciens_A6 Agrobacterium tumefaciens A6]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6RJK OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=6RJK FirstGlance]. <br>
-	</td></tr><tr id='~~gene~~'><td class="sblockLbl"><b>[[~~Gene~~\|~~Gene~~:]]</b></td><td class="sblockDat"~~>sghA ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&~~id~~=1453998 Agrobacterium tumefaciens A6])</td></tr>~~	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 1.922Å</td></tr>
-	~~<tr id='activity'><td class~~="~~sblockLbl~~">~~<b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Beta~~-~~glucosidase Beta-glucosidase]~~, ~~with EC number~~ [~~http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.2.~~1.~~21 3.2.1.21] </span>~~</td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=6rjk FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6rjk OCA], [https://pdbe.org/6rjk PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=6rjk RCSB], [https://www.ebi.ac.uk/pdbsum/6rjk PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=6rjk ProSAT]</span></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=6rjk FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6rjk OCA], [~~http~~://pdbe.org/6rjk PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=6rjk RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/6rjk PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=6rjk ProSAT]</span></td></tr>	+
	</table>		</table>
		+	== Function ==
		+	[https://www.uniprot.org/uniprot/A0A2I4PGZ0_RHIRD A0A2I4PGZ0_RHIRD]
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
	== Publication Abstract from PubMed ==		== Publication Abstract from PubMed ==
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	</div>		</div>
	<div class="pdbe-citations 6rjk" style="background-color:#fffaf0;"></div>		<div class="pdbe-citations 6rjk" style="background-color:#fffaf0;"></div>
		+
		+	==See Also==
		+	*[[Beta-glucosidase 3D structures\|Beta-glucosidase 3D structures]]
	== References ==		== References ==
	<references/>		<references/>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: Agrobacterium tumefaciens ~~a6]]~~	+	[[Category: Agrobacterium tumefaciens A6]]
-	~~[[Category: Beta-glucosidase~~]]	+
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: Chang~~, C Q~~]]	+	[[Category: Chang CQ]]
-	[[Category: Gao~~, Y G~~]]	+	[[Category: Gao YG]]
-	[[Category: Wang, C]]	+	[[Category: Wang C]]
-	[[Category: Ye~~, F Z~~]]	+	[[Category: Ye FZ]]
-	[[Category: Zhang~~, L H]]~~	+	[[Category: Zhang LH]]
-	~~[[Category: Agrobacterium]]~~	+
-	~~[[Category: Chemical signaling]]~~	+
-	~~[[Category: Glucosidase]]~~	+
-	~~[[Category: Host-pathogen interaction]]~~	+
-	~~[[Category: Hydrolase]]~~	+
-	~~[[Category: Sucrose~~]]	+

OCA at 08:08, 23 October 2019

OCA — Wed, 23 Oct 2019 08:08:57 GMT

←Older revision		Revision as of 08:08, 23 October 2019
Line 3:		Line 3:
	<StructureSection load='6rjk' size='340' side='right'caption='[[6rjk]], [[Resolution\|resolution]] 1.92Å' scene=''>		<StructureSection load='6rjk' size='340' side='right'caption='[[6rjk]], [[Resolution\|resolution]] 1.92Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[6rjk]] is a 2 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6RJK OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6RJK FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[6rjk]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Agrobacterium_tumefaciens_a6 Agrobacterium tumefaciens a6]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6RJK OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6RJK FirstGlance]. <br>
-	</td></tr><tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Beta-glucosidase Beta-glucosidase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.2.1.21 3.2.1.21] </span></td></tr>	+	</td></tr><tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">sghA ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1453998 Agrobacterium tumefaciens A6])</td></tr>
		+	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Beta-glucosidase Beta-glucosidase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.2.1.21 3.2.1.21] </span></td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6rjk FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6rjk OCA], [http://pdbe.org/6rjk PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6rjk RCSB], [http://www.ebi.ac.uk/pdbsum/6rjk PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6rjk ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6rjk FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6rjk OCA], [http://pdbe.org/6rjk PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6rjk RCSB], [http://www.ebi.ac.uk/pdbsum/6rjk PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6rjk ProSAT]</span></td></tr>
	</table>		</table>
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	It is highly intriguing how bacterial pathogens can quickly shut down energy-costly infection machinery once successful infection is established. This study depicts that mutation of repressor SghR increases the expression of hydrolase SghA in Agrobacterium tumefaciens, which releases plant defense signal salicylic acid (SA) from its storage form SA beta-glucoside (SAG). Addition of SA substantially reduces gene expression of bacterial virulence. Bacterial vir genes and sghA are differentially transcribed at early and later infection stages, respectively. Plant metabolite sucrose is a signal ligand that inactivates SghR and consequently induces sghA expression. Disruption of sghA leads to increased vir expression in planta and enhances tumor formation whereas mutation of sghR decreases vir expression and tumor formation. These results depict a remarkable mechanism by which A. tumefaciens taps on the reserved pool of plant signal SA to reprogram its virulence upon establishment of infection.
		+
		+	Agrobacteria reprogram virulence gene expression by controlled release of host-conjugated signals.,Wang C, Ye F, Chang C, Liu X, Wang J, Wang J, Yan XF, Fu Q, Zhou J, Chen S, Gao YG, Zhang LH Proc Natl Acad Sci U S A. 2019 Oct 11. pii: 1903695116. doi:, 10.1073/pnas.1903695116. PMID:31604827<ref>PMID:31604827</ref>
		+
		+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
		+	</div>
		+	<div class="pdbe-citations 6rjk" style="background-color:#fffaf0;"></div>
		+	== References ==
		+	<references/>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
		+	[[Category: Agrobacterium tumefaciens a6]]
	[[Category: Beta-glucosidase]]		[[Category: Beta-glucosidase]]
	[[Category: Large Structures]]		[[Category: Large Structures]]

OCA at 05:24, 10 October 2019

OCA — Thu, 10 Oct 2019 05:24:29 GMT

←Older revision		Revision as of 05:24, 10 October 2019
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-	'''Unreleased structure'''

-	~~The entry~~ 6rjk is ~~ON HOLD~~	+	==Structure of virulence factor SghA from Agrobacterium tumefaciens==
-		+	<StructureSection load='6rjk' size='340' side='right'caption='[[6rjk]], [[Resolution\|resolution]] 1.92Å' scene=''>
-	~~Authors~~: Ye, F.Z.~~, Wang, C~~., ~~Chang~~, C.Q., ~~Zhang, L~~.H., ~~Gao, Y~~.G.	+	== Structural highlights ==
-		+	<table><tr><td colspan='2'>[[6rjk]] is a 2 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6RJK OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6RJK FirstGlance]. <br>
-	~~Description~~: ~~Structure of virulence factor SghA from Agrobacterium tumefaciens~~	+	</td></tr><tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Beta-glucosidase Beta-glucosidase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.2.1.21 3.2.1.21] </span></td></tr>
-	[[Category: ~~Unreleased~~ Structures]]	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6rjk FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6rjk OCA], [http://pdbe.org/6rjk PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6rjk RCSB], [http://www.ebi.ac.uk/pdbsum/6rjk PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6rjk ProSAT]</span></td></tr>
-	[[Category: Gao, Y.G]]	+	</table>
		+	__TOC__
		+	</StructureSection>
		+	[[Category: Beta-glucosidase]]
		+	[[Category: Large Structures]]
		+	[[Category: Chang, C Q]]
		+	[[Category: Gao, Y G]]
	[[Category: Wang, C]]		[[Category: Wang, C]]
-	[[Category: ~~Chang~~, ~~C.Q~~]]	+	[[Category: Ye, F Z]]
-	[[Category: Ye, ~~F.Z~~]]	+	[[Category: Zhang, L H]]
-	[[Category: ~~Zhang, L.H~~]]	+	[[Category: Agrobacterium]]
		+	[[Category: Chemical signaling]]
		+	[[Category: Glucosidase]]
		+	[[Category: Host-pathogen interaction]]
		+	[[Category: Hydrolase]]
		+	[[Category: Sucrose]]

OCA: Protected "6rjk" [edit=sysop:move=sysop]

OCA — Fri, 10 May 2019 08:21:08 GMT

Protected "6rjk" [edit=sysop:move=sysop]

←Older revision

Revision as of 08:21, 10 May 2019

OCA: New page: '''Unreleased structure''' The entry 6rjk is ON HOLD Authors: Ye, F.Z., Wang, C., Chang, C.Q., Zhang, L.H., Gao, Y.G. Description: Structure of virulence factor SghA from Agrobacterium...

OCA — Fri, 10 May 2019 08:21:04 GMT

New page: '''Unreleased structure''' The entry 6rjk is ON HOLD Authors: Ye, F.Z., Wang, C., Chang, C.Q., Zhang, L.H., Gao, Y.G. Description: Structure of virulence factor SghA from Agrobacterium...

New page

'''Unreleased structure'''

The entry 6rjk is ON HOLD

Authors: Ye, F.Z., Wang, C., Chang, C.Q., Zhang, L.H., Gao, Y.G.

Description: Structure of virulence factor SghA from Agrobacterium tumefaciens
[[Category: Unreleased Structures]]
[[Category: Gao, Y.G]]
[[Category: Wang, C]]
[[Category: Chang, C.Q]]
[[Category: Ye, F.Z]]
[[Category: Zhang, L.H]]