6rnf - Revision history

OCA at 12:24, 24 January 2024

OCA — Wed, 24 Jan 2024 12:24:23 GMT

←Older revision		Revision as of 12:24, 24 January 2024
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	<StructureSection load='6rnf' size='340' side='right'caption='[[6rnf]], [[Resolution\|resolution]] 1.70Å' scene=''>		<StructureSection load='6rnf' size='340' side='right'caption='[[6rnf]], [[Resolution\|resolution]] 1.70Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[6rnf]] is a 1 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/~~"actinomyces_rubiginosus"_preobrazhenskaya_et_al._in_gauze_et_al._1957 "actinomyces~~ rubiginosus~~" preobrazhenskaya et al. in gauze et al. 1957~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6RNF OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=6RNF FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[6rnf]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Streptomyces_rubiginosus Streptomyces rubiginosus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6RNF OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=6RNF FirstGlance]. <br>
-	</td></tr><tr id='~~ligand~~'><td class="sblockLbl"><b>[[~~Ligand~~\|~~Ligands~~:]]</b></td><td class="sblockDat">~~<scene name='pdbligand=GLC:ALPHA~~-~~D-GLUCOSE'>GLC</scene>~~, ~~<scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>~~</td></tr>	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 1.7Å</td></tr>
-	<tr id='~~gene~~'><td class="sblockLbl"><b>[[~~Gene~~\|~~Gene~~:]]</b></td><td class="sblockDat"~~>xylA ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&~~id=~~1929~~ "~~Actinomyces rubiginosus~~" ~~Preobrazhenskaya et al. in Gauze et al. 1957])</td~~><~~/tr>~~	+	<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=GLC:ALPHA-D-GLUCOSE'>GLC</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr>
-	~~<tr id~~='~~activity'><td class~~=~~"sblockLbl"><b>Activity~~:~~</b~~></td><~~td class~~=~~"sblockDat"><span class~~=~~'plainlinks~~'>~~[http://en.wikipedia.org/wiki/Xylose_isomerase Xylose isomerase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=5.3.1.5 5.3.1.5]~~ </~~span~~></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=6rnf FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6rnf OCA], [https://pdbe.org/6rnf PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=6rnf RCSB], [https://www.ebi.ac.uk/pdbsum/6rnf PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=6rnf ProSAT]</span></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=6rnf FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6rnf OCA], [~~http~~://pdbe.org/6rnf PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=6rnf RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/6rnf PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=6rnf ProSAT]</span></td></tr>	+
	</table>		</table>
	== Function ==		== Function ==
-	[~~[http~~://www.uniprot.org/uniprot/XYLA_STRRU XYLA_STRRU]] Involved in D-xylose catabolism.	+	[https://www.uniprot.org/uniprot/XYLA_STRRU XYLA_STRRU] Involved in D-xylose catabolism.
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
	== Publication Abstract from PubMed ==		== Publication Abstract from PubMed ==
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	</div>		</div>
	<div class="pdbe-citations 6rnf" style="background-color:#fffaf0;"></div>		<div class="pdbe-citations 6rnf" style="background-color:#fffaf0;"></div>
		+
		+	==See Also==
		+	*[[D-xylose isomerase 3D structures\|D-xylose isomerase 3D structures]]
	== References ==		== References ==
	<references/>		<references/>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: Actinomyces rubiginosus preobrazhenskaya et al. in gauze et al. 1957]]
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: ~~Xylose isomerase~~]]	+	[[Category: Streptomyces rubiginosus]]
-	[[Category: Mehrabi, P]]	+	[[Category: Mehrabi P]]
-	[[Category: Miller~~, R J.D~~]]	+	[[Category: Miller RJD]]
-	[[Category: Schulz~~, E C]]~~	+	[[Category: Schulz EC]]
-	~~[[Category: Complex]]~~	+
-	~~[[Category: Diffusion]]~~	+
-	~~[[Category: Dynamic]]~~	+
-	~~[[Category: Isomerase~~]]	+

OCA at 06:25, 10 October 2019

OCA — Thu, 10 Oct 2019 06:25:09 GMT

←Older revision		Revision as of 06:25, 10 October 2019
Line 3:		Line 3:
	<StructureSection load='6rnf' size='340' side='right'caption='[[6rnf]], [[Resolution\|resolution]] 1.70Å' scene=''>		<StructureSection load='6rnf' size='340' side='right'caption='[[6rnf]], [[Resolution\|resolution]] 1.70Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[6rnf]] is a 1 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6RNF OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6RNF FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[6rnf]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/"actinomyces_rubiginosus"_preobrazhenskaya_et_al._in_gauze_et_al._1957 "actinomyces rubiginosus" preobrazhenskaya et al. in gauze et al. 1957]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6RNF OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6RNF FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=GLC:ALPHA-D-GLUCOSE'>GLC</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=GLC:ALPHA-D-GLUCOSE'>GLC</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr>
		+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">xylA ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1929 "Actinomyces rubiginosus" Preobrazhenskaya et al. in Gauze et al. 1957])</td></tr>
	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Xylose_isomerase Xylose isomerase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=5.3.1.5 5.3.1.5] </span></td></tr>		<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Xylose_isomerase Xylose isomerase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=5.3.1.5 5.3.1.5] </span></td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6rnf FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6rnf OCA], [http://pdbe.org/6rnf PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6rnf RCSB], [http://www.ebi.ac.uk/pdbsum/6rnf PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6rnf ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6rnf FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6rnf OCA], [http://pdbe.org/6rnf PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6rnf RCSB], [http://www.ebi.ac.uk/pdbsum/6rnf PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6rnf ProSAT]</span></td></tr>
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	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
		+	[[Category: Actinomyces rubiginosus preobrazhenskaya et al. in gauze et al. 1957]]
	[[Category: Large Structures]]		[[Category: Large Structures]]
	[[Category: Xylose isomerase]]		[[Category: Xylose isomerase]]

OCA at 10:40, 2 October 2019

OCA — Wed, 02 Oct 2019 10:40:43 GMT

←Older revision		Revision as of 10:40, 2 October 2019
Line 1:		Line 1:
-	'''Unreleased structure'''

-	~~The entry~~ 6rnf is ~~ON HOLD until sometime in~~ the ~~future~~	+	==Liquid Application Method for time-resolved Analyses (LAMA) by serial synchrotron crystallography, Xylose Isomerase 30 ms timepoint==
		+	<StructureSection load='6rnf' size='340' side='right'caption='[[6rnf]], [[Resolution\|resolution]] 1.70Å' scene=''>
		+	== Structural highlights ==
		+	<table><tr><td colspan='2'>[[6rnf]] is a 1 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6RNF OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6RNF FirstGlance]. <br>
		+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=GLC:ALPHA-D-GLUCOSE'>GLC</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr>
		+	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Xylose_isomerase Xylose isomerase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=5.3.1.5 5.3.1.5] </span></td></tr>
		+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6rnf FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6rnf OCA], [http://pdbe.org/6rnf PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6rnf RCSB], [http://www.ebi.ac.uk/pdbsum/6rnf PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6rnf ProSAT]</span></td></tr>
		+	</table>
		+	== Function ==
		+	[[http://www.uniprot.org/uniprot/XYLA_STRRU XYLA_STRRU]] Involved in D-xylose catabolism.
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	We introduce a liquid application method for time-resolved analyses (LAMA), an in situ mixing approach for serial crystallography. Picoliter-sized droplets are shot onto chip-mounted protein crystals, achieving near-full ligand occupancy within theoretical diffusion times. We demonstrate proof-of-principle binding of GlcNac to lysozyme, and resolve glucose binding and subsequent ring opening in a time-resolved study of xylose isomerase.

-	~~Authors: Mehrabi~~, P., Schulz, ~~E.C.~~, ~~Miller~~, R.J.D.	+	Liquid application method for time-resolved analyses by serial synchrotron crystallography.,Mehrabi P, Schulz EC, Agthe M, Horrell S, Bourenkov G, von Stetten D, Leimkohl JP, Schikora H, Schneider TR, Pearson AR, Tellkamp F, Miller RJD Nat Methods. 2019 Oct;16(10):979-982. doi: 10.1038/s41592-019-0553-1. Epub 2019, Sep 16. PMID:31527838<ref>PMID:31527838</ref>

-	~~Description: Liquid Application Method for time-resolved Analyses (LAMA) by serial synchrotron crystallography~~, ~~Xylose Isomerase 30 ms timepoint~~	+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
-	[[Category: ~~Unreleased~~ Structures]]	+	</div>
		+	<div class="pdbe-citations 6rnf" style="background-color:#fffaf0;"></div>
		+	== References ==
		+	<references/>
		+	__TOC__
		+	</StructureSection>
		+	[[Category: Large Structures]]
		+	[[Category: Xylose isomerase]]
	[[Category: Mehrabi, P]]		[[Category: Mehrabi, P]]
-	[[Category: Miller, R.J.D]]	+	[[Category: Miller, R J.D]]
-	[[Category: Schulz, E.C]]	+	[[Category: Schulz, E C]]
		+	[[Category: Complex]]
		+	[[Category: Diffusion]]
		+	[[Category: Dynamic]]
		+	[[Category: Isomerase]]

OCA: Protected "6rnf" [edit=sysop:move=sysop]

OCA — Tue, 21 May 2019 06:02:03 GMT

Protected "6rnf" [edit=sysop:move=sysop]

←Older revision

Revision as of 06:02, 21 May 2019

OCA: New page: '''Unreleased structure''' The entry 6rnf is ON HOLD until sometime in the future Authors: Mehrabi, P., Schulz, E.C., Miller, R.J.D. Description: Liquid Application Method for time-res...

OCA — Tue, 21 May 2019 06:02:01 GMT

New page: '''Unreleased structure''' The entry 6rnf is ON HOLD until sometime in the future Authors: Mehrabi, P., Schulz, E.C., Miller, R.J.D. Description: Liquid Application Method for time-res...

New page

'''Unreleased structure'''

The entry 6rnf is ON HOLD until sometime in the future

Authors: Mehrabi, P., Schulz, E.C., Miller, R.J.D.

Description: Liquid Application Method for time-resolved Analyses (LAMA) by serial synchrotron crystallography, Xylose Isomerase 30 ms timepoint
[[Category: Unreleased Structures]]
[[Category: Mehrabi, P]]
[[Category: Miller, R.J.D]]
[[Category: Schulz, E.C]]