6s21 - Revision history

OCA at 07:31, 19 February 2020

OCA — Wed, 19 Feb 2020 07:31:53 GMT

←Older revision		Revision as of 07:31, 19 February 2020
Line 3:		Line 3:
	<StructureSection load='6s21' size='340' side='right'caption='[[6s21]], [[Resolution\|resolution]] 2.80Å' scene=''>		<StructureSection load='6s21' size='340' side='right'caption='[[6s21]], [[Resolution\|resolution]] 2.80Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[6s21]] is a 3 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6S21 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6S21 FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[6s21]] is a 3 chain structure with sequence from [http://en.wikipedia.org/wiki/Bactn Bactn]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6S21 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6S21 FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=ASG:2-DEOXY-2-ACETAMIDO-BETA-D-GALACTOSE-4-SULFATE'>ASG</scene>, <scene name='pdbligand=BDP:BETA-D-GLUCOPYRANURONIC+ACID'>BDP</scene>, <scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=GCD:4,5-DEHYDRO-D-GLUCURONIC+ACID'>GCD</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=ASG:2-DEOXY-2-ACETAMIDO-BETA-D-GALACTOSE-4-SULFATE'>ASG</scene>, <scene name='pdbligand=BDP:BETA-D-GLUCOPYRANURONIC+ACID'>BDP</scene>, <scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=GCD:4,5-DEHYDRO-D-GLUCURONIC+ACID'>GCD</scene></td></tr>
		+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">BT_3349 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=226186 BACTN])</td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6s21 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6s21 OCA], [http://pdbe.org/6s21 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6s21 RCSB], [http://www.ebi.ac.uk/pdbsum/6s21 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6s21 ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6s21 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6s21 OCA], [http://pdbe.org/6s21 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6s21 RCSB], [http://www.ebi.ac.uk/pdbsum/6s21 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6s21 ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
	[[http://www.uniprot.org/uniprot/ENDSF_BACTN ENDSF_BACTN]] Endosulfatase involved in the degradation of the glycosaminoglycans (GAGs) chondroitin sulfate (CS) and dermatan sulfate (DS). Efficiently hydrolyzes sulfate groups from a broad range of substrate size, including disaccharide to high molecular weight CS and DS polymers. Has a strict specificity for the 4-O-sulfate groups of galactosamine (PubMed:25002587). GAG-specific sulfatases play a key role in the persistence of the major human gut symbiont B.thetaiotaomicron in the host gastrointestinal tract (PubMed:25002587).<ref>PMID:25002587</ref> <ref>PMID:25002587</ref>		[[http://www.uniprot.org/uniprot/ENDSF_BACTN ENDSF_BACTN]] Endosulfatase involved in the degradation of the glycosaminoglycans (GAGs) chondroitin sulfate (CS) and dermatan sulfate (DS). Efficiently hydrolyzes sulfate groups from a broad range of substrate size, including disaccharide to high molecular weight CS and DS polymers. Has a strict specificity for the 4-O-sulfate groups of galactosamine (PubMed:25002587). GAG-specific sulfatases play a key role in the persistence of the major human gut symbiont B.thetaiotaomicron in the host gastrointestinal tract (PubMed:25002587).<ref>PMID:25002587</ref> <ref>PMID:25002587</ref>
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	The human gut microbiota (HGM), which is critical to human health, utilises complex glycans as its major carbon source. Glycosaminoglycans represent an important, high priority, nutrient source for the HGM. Pathways for the metabolism of various glycosaminoglycan substrates remain ill-defined. Here we perform a biochemical, genetic and structural dissection of the genetic loci that orchestrates glycosaminoglycan metabolism in the organism Bacteroides thetaiotaomicron. Here, we report: the discovery of two previously unknown surface glycan binding proteins which facilitate glycosaminoglycan import into the periplasm; distinct kinetic and genetic specificities of various periplasmic lyases which dictate glycosaminoglycan metabolic pathways; understanding of endo sulfatase activity questioning the paradigm of how the 'sulfation problem' is handled by the HGM; and 3D crystal structures of the polysaccharide utilisation loci encoded sulfatases. Together with comparative genomic studies, our study fills major gaps in our knowledge of glycosaminoglycan metabolism by the HGM.
		+
		+	Metabolism of multiple glycosaminoglycans by Bacteroides thetaiotaomicron is orchestrated by a versatile core genetic locus.,Ndeh D, Basle A, Strahl H, Yates EA, McClurgg UL, Henrissat B, Terrapon N, Cartmell A Nat Commun. 2020 Jan 31;11(1):646. doi: 10.1038/s41467-020-14509-4. PMID:32005816<ref>PMID:32005816</ref>
		+
		+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
		+	</div>
		+	<div class="pdbe-citations 6s21" style="background-color:#fffaf0;"></div>
		+
		+	==See Also==
		+	*[[Sulfatase 3D structures\|Sulfatase 3D structures]]
	== References ==		== References ==
	<references/>		<references/>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
		+	[[Category: Bactn]]
	[[Category: Large Structures]]		[[Category: Large Structures]]
	[[Category: Basle, A]]		[[Category: Basle, A]]

OCA at 08:08, 5 February 2020

OCA — Wed, 05 Feb 2020 08:08:46 GMT

←Older revision		Revision as of 08:08, 5 February 2020
Line 1:		Line 1:
-	'''Unreleased structure'''

-	~~The entry 6s21~~ is ~~ON HOLD~~	+	==Metabolism of multiple glycosaminoglycans by bacteroides thetaiotaomicron is orchestrated by a versatile core genetic locus (BT33494S-sulf)==
-		+	<StructureSection load='6s21' size='340' side='right'caption='[[6s21]], [[Resolution\|resolution]] 2.80Å' scene=''>
-	~~Authors~~: ~~Ndeh~~, D., ~~Basle~~, A., ~~Strahl~~, H., ~~Henrissat, B~~., ~~Terrapon, N~~., ~~Cartmell, A~~.	+	== Structural highlights ==
-		+	<table><tr><td colspan='2'>[[6s21]] is a 3 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6S21 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6S21 FirstGlance]. <br>
-	~~Description~~: ~~The metabolism~~ of ~~multiple~~ glycosaminoglycans by the human gut ~~microbiota is orchestrated by a versatile core genetic locus~~ (~~BT33494S-sulf~~)	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=ASG:2-DEOXY-2-ACETAMIDO-BETA-D-GALACTOSE-4-SULFATE'>ASG</scene>, <scene name='pdbligand=BDP:BETA-D-GLUCOPYRANURONIC+ACID'>BDP</scene>, <scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=GCD:4,5-DEHYDRO-D-GLUCURONIC+ACID'>GCD</scene></td></tr>
-	[[Category: ~~Unreleased~~ Structures]]	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6s21 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6s21 OCA], [http://pdbe.org/6s21 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6s21 RCSB], [http://www.ebi.ac.uk/pdbsum/6s21 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6s21 ProSAT]</span></td></tr>
		+	</table>
		+	== Function ==
		+	[[http://www.uniprot.org/uniprot/ENDSF_BACTN ENDSF_BACTN]] Endosulfatase involved in the degradation of the glycosaminoglycans (GAGs) chondroitin sulfate (CS) and dermatan sulfate (DS). Efficiently hydrolyzes sulfate groups from a broad range of substrate size, including disaccharide to high molecular weight CS and DS polymers. Has a strict specificity for the 4-O-sulfate groups of galactosamine (PubMed:25002587). GAG-specific sulfatases play a key role in the persistence of the major human gut symbiont B.thetaiotaomicron in the host gastrointestinal tract (PubMed:25002587).<ref>PMID:25002587</ref> <ref>PMID:25002587</ref>
		+	== References ==
		+	<references/>
		+	__TOC__
		+	</StructureSection>
		+	[[Category: Large Structures]]
		+	[[Category: Basle, A]]
	[[Category: Cartmell, A]]		[[Category: Cartmell, A]]
		+	[[Category: Henrissat, B]]
		+	[[Category: Ndeh, D]]
	[[Category: Strahl, H]]		[[Category: Strahl, H]]
-	[[Category: Henrissat, B]]
	[[Category: Terrapon, N]]		[[Category: Terrapon, N]]
-	[[Category: ~~Ndeh, D~~]]	+	[[Category: Cazyme]]
-	[[Category: ~~Basle, A~~]]	+	[[Category: Glycobiology]]
		+	[[Category: Glycosaminoglycan]]
		+	[[Category: Gut microbiota]]
		+	[[Category: Hydrolase]]

OCA: Protected "6s21" [edit=sysop:move=sysop]

OCA — Wed, 26 Jun 2019 05:30:58 GMT

Protected "6s21" [edit=sysop:move=sysop]

←Older revision

Revision as of 05:30, 26 June 2019

OCA: New page: '''Unreleased structure''' The entry 6s21 is ON HOLD Authors: Ndeh, D., Basle, A., Strahl, H., Henrissat, B., Terrapon, N., Cartmell, A. Description: The metabolism of multiple glycosa...

OCA — Wed, 26 Jun 2019 05:30:56 GMT

New page: '''Unreleased structure''' The entry 6s21 is ON HOLD Authors: Ndeh, D., Basle, A., Strahl, H., Henrissat, B., Terrapon, N., Cartmell, A. Description: The metabolism of multiple glycosa...

New page

'''Unreleased structure'''

The entry 6s21 is ON HOLD

Authors: Ndeh, D., Basle, A., Strahl, H., Henrissat, B., Terrapon, N., Cartmell, A.

Description: The metabolism of multiple glycosaminoglycans by the human gut microbiota is orchestrated by a versatile core genetic locus (BT33494S-sulf)
[[Category: Unreleased Structures]]
[[Category: Cartmell, A]]
[[Category: Strahl, H]]
[[Category: Henrissat, B]]
[[Category: Terrapon, N]]
[[Category: Ndeh, D]]
[[Category: Basle, A]]