6s5y - Revision history

OCA at 10:03, 21 December 2022

OCA — Wed, 21 Dec 2022 10:03:15 GMT

←Older revision		Revision as of 10:03, 21 December 2022
Line 3:		Line 3:
	<StructureSection load='6s5y' size='340' side='right'caption='[[6s5y]], [[Resolution\|resolution]] 2.30Å' scene=''>		<StructureSection load='6s5y' size='340' side='right'caption='[[6s5y]], [[Resolution\|resolution]] 2.30Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[6s5y]] is a 8 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/~~"streptoccocus_de_la_mammite"_nocard_and_mollereau_1887 "streptoccocus de la mammite" nocard and mollereau 1887~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6S5Y OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=6S5Y FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[6s5y]] is a 8 chain structure with sequence from [https://en.wikipedia.org/wiki/Streptococcus_agalactiae Streptococcus agalactiae]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6S5Y OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=6S5Y FirstGlance]. <br>
-	</td></tr><tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">rib ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1311 "Streptoccocus de la mammite" Nocard and Mollereau 1887])</td></tr>	+	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=6s5y FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6s5y OCA], [https://pdbe.org/6s5y PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=6s5y RCSB], [https://www.ebi.ac.uk/pdbsum/6s5y PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=6s5y ProSAT]</span></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=6s5y FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6s5y OCA], [~~http~~://pdbe.org/6s5y PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=6s5y RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/6s5y PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=6s5y ProSAT]</span></td></tr>	+
	</table>		</table>
		+	== Function ==
		+	[https://www.uniprot.org/uniprot/P72362_STRAG P72362_STRAG]
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
	== Publication Abstract from PubMed ==		== Publication Abstract from PubMed ==
Line 20:		Line 21:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: Streptoccocus de la mammite nocard and mollereau 1887]]
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: ~~Bateman, A~~]]	+	[[Category: Streptococcus agalactiae]]
-	[[Category: ~~Griffiths, S C~~]]	+	[[Category: Bateman A]]
-	[[Category: ~~Potts, J R~~]]	+	[[Category: Griffiths SC]]
-	[[Category: ~~Whelan, F~~]]	+	[[Category: Potts JR]]
-	[[Category: ~~Bacterial cell surface]]~~	+	[[Category: Whelan F]]
-	~~[[Category: Domain atrophy]]~~	+
-	~~[[Category: Immunoglobulin fold]]~~	+
-	~~[[Category: Profile-hmm]]~~	+
-	~~[[Category: Rib domain]]~~	+
-	~~[[Category: Structural protein~~]]	+

OCA at 13:12, 18 December 2019

OCA — Wed, 18 Dec 2019 13:12:06 GMT

←Older revision		Revision as of 13:12, 18 December 2019
Line 3:		Line 3:
	<StructureSection load='6s5y' size='340' side='right'caption='[[6s5y]], [[Resolution\|resolution]] 2.30Å' scene=''>		<StructureSection load='6s5y' size='340' side='right'caption='[[6s5y]], [[Resolution\|resolution]] 2.30Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[6s5y]] is a 8 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6S5Y OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6S5Y FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[6s5y]] is a 8 chain structure with sequence from [http://en.wikipedia.org/wiki/"streptoccocus_de_la_mammite"_nocard_and_mollereau_1887 "streptoccocus de la mammite" nocard and mollereau 1887]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6S5Y OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6S5Y FirstGlance]. <br>
-	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6s5y FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6s5y OCA], [http://pdbe.org/6s5y PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6s5y RCSB], [http://www.ebi.ac.uk/pdbsum/6s5y PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6s5y ProSAT]</span></td></tr>	+	</td></tr><tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">rib ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1311 "Streptoccocus de la mammite" Nocard and Mollereau 1887])</td></tr>
		+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6s5y FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6s5y OCA], [http://pdbe.org/6s5y PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6s5y RCSB], [http://www.ebi.ac.uk/pdbsum/6s5y PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6s5y ProSAT]</span></td></tr>
	</table>		</table>
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	Streptococcus groups A and B cause serious infections, including early onset sepsis and meningitis in newborns. Rib domain-containing surface proteins are found associated with invasive strains and elicit protective immunity in animal models. Yet, despite their apparent importance in infection, the structure of the Rib domain was previously unknown. Structures of single Rib domains of differing length reveal a rare case of domain atrophy through deletion of 2 core antiparallel strands, resulting in the loss of an entire sheet of the beta-sandwich from an immunoglobulin-like fold. Previously, observed variation in the number of Rib domains within these bacterial cell wall-attached proteins has been suggested as a mechanism of immune evasion. Here, the structure of tandem domains, combined with molecular dynamics simulations and small angle X-ray scattering, suggests that variability in Rib domain number would result in differential projection of an N-terminal host-colonization domain from the bacterial surface. The identification of 2 further structures where the typical B-D-E immunoglobulin beta-sheet is replaced with an alpha-helix further confirms the extensive structural malleability of the Rib domain.
		+
		+	Defining the remarkable structural malleability of a bacterial surface protein Rib domain implicated in infection.,Whelan F, Lafita A, Griffiths SC, Cooper REM, Whittingham JL, Turkenburg JP, Manfield IW, St John AN, Paci E, Bateman A, Potts JR Proc Natl Acad Sci U S A. 2019 Dec 9. pii: 1911776116. doi:, 10.1073/pnas.1911776116. PMID:31818940<ref>PMID:31818940</ref>
		+
		+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
		+	</div>
		+	<div class="pdbe-citations 6s5y" style="background-color:#fffaf0;"></div>
		+	== References ==
		+	<references/>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
		+	[[Category: Streptoccocus de la mammite nocard and mollereau 1887]]
	[[Category: Large Structures]]		[[Category: Large Structures]]
	[[Category: Bateman, A]]		[[Category: Bateman, A]]

OCA at 15:22, 11 December 2019

OCA — Wed, 11 Dec 2019 15:22:12 GMT

←Older revision		Revision as of 15:22, 11 December 2019
Line 1:		Line 1:
-	'''Unreleased structure'''

-	~~The entry~~ 6s5y is ~~ON HOLD~~	+	==Structure of tandemly arrayed consecutive Rib domains (Rib2R) from Group B Streptococcal species Streptococcus agalactiae==
-		+	<StructureSection load='6s5y' size='340' side='right'caption='[[6s5y]], [[Resolution\|resolution]] 2.30Å' scene=''>
-	~~Authors~~:	+	== Structural highlights ==
-		+	<table><tr><td colspan='2'>[[6s5y]] is a 8 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6S5Y OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6S5Y FirstGlance]. <br>
-	~~Description~~:	+	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6s5y FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6s5y OCA], [http://pdbe.org/6s5y PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6s5y RCSB], [http://www.ebi.ac.uk/pdbsum/6s5y PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6s5y ProSAT]</span></td></tr>
-	[[Category: ~~Unreleased Structures~~]]	+	</table>
		+	__TOC__
		+	</StructureSection>
		+	[[Category: Large Structures]]
		+	[[Category: Bateman, A]]
		+	[[Category: Griffiths, S C]]
		+	[[Category: Potts, J R]]
		+	[[Category: Whelan, F]]
		+	[[Category: Bacterial cell surface]]
		+	[[Category: Domain atrophy]]
		+	[[Category: Immunoglobulin fold]]
		+	[[Category: Profile-hmm]]
		+	[[Category: Rib domain]]
		+	[[Category: Structural protein]]

OCA: Protected "6s5y" [edit=sysop:move=sysop]

OCA — Wed, 10 Jul 2019 04:26:55 GMT

Protected "6s5y" [edit=sysop:move=sysop]

←Older revision

Revision as of 04:26, 10 July 2019

OCA: New page: '''Unreleased structure''' The entry 6s5y is ON HOLD Authors: Description: Category: Unreleased Structures

OCA — Wed, 10 Jul 2019 04:26:54 GMT

New page: '''Unreleased structure''' The entry 6s5y is ON HOLD Authors: Description: Category: Unreleased Structures

New page

'''Unreleased structure'''

The entry 6s5y is ON HOLD

Authors:

Description:
[[Category: Unreleased Structures]]