6sdr - Revision history

OCA at 12:40, 24 January 2024

OCA — Wed, 24 Jan 2024 12:40:10 GMT

←Older revision		Revision as of 12:40, 24 January 2024
Line 3:		Line 3:
	<StructureSection load='6sdr' size='340' side='right'caption='[[6sdr]], [[Resolution\|resolution]] 2.10Å' scene=''>		<StructureSection load='6sdr' size='340' side='right'caption='[[6sdr]], [[Resolution\|resolution]] 2.10Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[6sdr]] is a 2 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/~~Desulfovibrio_vulgaris_(strain_hildenborough_/_atcc_29579_/_dsm_644_/_ncimb_8303)~~ Desulfovibrio vulgaris ~~(strain hildenborough / atcc 29579 / dsm 644 / ncimb 8303)~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6SDR OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=6SDR FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[6sdr]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Desulfovibrio_vulgaris_str._Hildenborough Desulfovibrio vulgaris str. Hildenborough]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6SDR OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=6SDR FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=H2S:HYDROSULFURIC+ACID'>H2S</scene>, <scene name='pdbligand=MGD:2-AMINO-5,6-DIMERCAPTO-7-METHYL-3,7,8A,9-TETRAHYDRO-8-OXA-1,3,9,10-TETRAAZA-ANTHRACEN-4-ONE+GUANOSINE+DINUCLEOTIDE'>MGD</scene>, <scene name='pdbligand=SF4:IRON/SULFUR+CLUSTER'>SF4</scene>, <scene name='pdbligand=W:TUNGSTEN+ION'>W</scene~~></td></tr>~~	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 2.1Å</td></tr>
-	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Formate_dehydrogenase Formate dehydrogenase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.2.1.2 1.2.1.2] </span></td></tr>	+	<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=H2S:HYDROSULFURIC+ACID'>H2S</scene>, <scene name='pdbligand=MGD:2-AMINO-5,6-DIMERCAPTO-7-METHYL-3,7,8A,9-TETRAHYDRO-8-OXA-1,3,9,10-TETRAAZA-ANTHRACEN-4-ONE+GUANOSINE+DINUCLEOTIDE'>MGD</scene>, <scene name='pdbligand=SF4:IRON/SULFUR+CLUSTER'>SF4</scene>, <scene name='pdbligand=W:TUNGSTEN+ION'>W</scene></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=6sdr FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6sdr OCA], [~~http~~://pdbe.org/6sdr PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=6sdr RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/6sdr PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=6sdr ProSAT]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=6sdr FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6sdr OCA], [https://pdbe.org/6sdr PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=6sdr RCSB], [https://www.ebi.ac.uk/pdbsum/6sdr PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=6sdr ProSAT]</span></td></tr>
	</table>		</table>
		+	== Function ==
		+	[https://www.uniprot.org/uniprot/Q72EJ0_DESVH Q72EJ0_DESVH]
		+
		+	==See Also==
		+	*[[Formate dehydrogenase 3D structures\|Formate dehydrogenase 3D structures]]
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: ~~Formate dehydrogenase~~]]	+	[[Category: Desulfovibrio vulgaris str. Hildenborough]]
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: Domingos~~, R M~~]]	+	[[Category: Domingos RM]]
-	[[Category: Gesto, D]]	+	[[Category: Gesto D]]
-	[[Category: Guigliarelli, B]]	+	[[Category: Guigliarelli B]]
-	[[Category: Mota, C]]	+	[[Category: Mota C]]
-	[[Category: Mourato, C]]	+	[[Category: Mourato C]]
-	[[Category: Oliveira~~, A R~~]]	+	[[Category: Oliveira AR]]
-	[[Category: Pereira~~, I C~~]]	+	[[Category: Pereira IC]]
-	[[Category: Romao~~, M J~~]]	+	[[Category: Romao MJ]]
-	[[Category: Santos~~, M F.A~~]]	+	[[Category: Santos MFA]]
-	[[Category: Santos-Silva, T]]	+	[[Category: Santos-Silva T]]
-	~~[[Category: Electron transport~~]]	+

OCA at 07:26, 11 March 2020

OCA — Wed, 11 Mar 2020 07:26:54 GMT

←Older revision		Revision as of 07:26, 11 March 2020
Line 1:		Line 1:
-	'''Unreleased structure'''

-	~~The entry~~ 6sdr ~~is ON HOLD until Paper Publication~~	+	==W-formate dehydrogenase from Desulfovibrio vulgaris - Oxidized form==
-		+	<StructureSection load='6sdr' size='340' side='right'caption='[[6sdr]], [[Resolution\|resolution]] 2.10Å' scene=''>
-	~~Authors~~: ~~Oliveira, A~~.R., ~~Mota~~, C., ~~Mourato~~, C., ~~Domingos~~, R.M., ~~Santos, M~~.F.A.~~, Gesto, D~~.~~, Guigliarelli, B~~., ~~Santos~~-~~Silva~~, T., ~~Romao, M~~.J., ~~Pereira~~, I.C.	+	== Structural highlights ==
-		+	<table><tr><td colspan='2'>[[6sdr]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Desulfovibrio_vulgaris_(strain_hildenborough_/_atcc_29579_/_dsm_644_/_ncimb_8303) Desulfovibrio vulgaris (strain hildenborough / atcc 29579 / dsm 644 / ncimb 8303)]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6SDR OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6SDR FirstGlance]. <br>
-	~~Description: W-formate dehydrogenase from Desulfovibrio vulgaris -Oxidized form~~	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=H2S:HYDROSULFURIC+ACID'>H2S</scene>, <scene name='pdbligand=MGD:2-AMINO-5,6-DIMERCAPTO-7-METHYL-3,7,8A,9-TETRAHYDRO-8-OXA-1,3,9,10-TETRAAZA-ANTHRACEN-4-ONE+GUANOSINE+DINUCLEOTIDE'>MGD</scene>, <scene name='pdbligand=SF4:IRON/SULFUR+CLUSTER'>SF4</scene>, <scene name='pdbligand=W:TUNGSTEN+ION'>W</scene></td></tr>
-	[[Category: ~~Unreleased Structures~~]]	+	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Formate_dehydrogenase Formate dehydrogenase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.2.1.2 1.2.1.2] </span></td></tr>
-	[[Category: ~~Santos, M.F.A~~]]	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6sdr FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6sdr OCA], [http://pdbe.org/6sdr PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6sdr RCSB], [http://www.ebi.ac.uk/pdbsum/6sdr PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6sdr ProSAT]</span></td></tr>
-	[[Category: Domingos, R.M]]	+	</table>
		+	__TOC__
		+	</StructureSection>
		+	[[Category: Formate dehydrogenase]]
		+	[[Category: Large Structures]]
		+	[[Category: Domingos, R M]]
	[[Category: Gesto, D]]		[[Category: Gesto, D]]
	[[Category: Guigliarelli, B]]		[[Category: Guigliarelli, B]]
-	[[Category: Pereira, I.C]]
	[[Category: Mota, C]]		[[Category: Mota, C]]
		+	[[Category: Mourato, C]]
		+	[[Category: Oliveira, A R]]
		+	[[Category: Pereira, I C]]
		+	[[Category: Romao, M J]]
		+	[[Category: Santos, M F.A]]
	[[Category: Santos-Silva, T]]		[[Category: Santos-Silva, T]]
-	[[Category: ~~Romao, M.J]]~~	+	[[Category: Electron transport]]
-	~~[[Category: Mourato, C]]~~	+
-	~~[[Category: Oliveira, A.R~~]]	+

OCA at 05:47, 18 December 2019

OCA — Wed, 18 Dec 2019 05:47:46 GMT

←Older revision		Revision as of 05:47, 18 December 2019
Line 1:		Line 1:
	'''Unreleased structure'''		'''Unreleased structure'''

-	The entry 6sdr is ON HOLD	+	The entry 6sdr is ON HOLD until Paper Publication

	Authors: Oliveira, A.R., Mota, C., Mourato, C., Domingos, R.M., Santos, M.F.A., Gesto, D., Guigliarelli, B., Santos-Silva, T., Romao, M.J., Pereira, I.C.		Authors: Oliveira, A.R., Mota, C., Mourato, C., Domingos, R.M., Santos, M.F.A., Gesto, D., Guigliarelli, B., Santos-Silva, T., Romao, M.J., Pereira, I.C.

OCA at 13:31, 11 December 2019

OCA — Wed, 11 Dec 2019 13:31:53 GMT

←Older revision		Revision as of 13:31, 11 December 2019
Line 3:		Line 3:
	The entry 6sdr is ON HOLD		The entry 6sdr is ON HOLD

-	Authors: Oliveira, A.R., Mota, C., Mourato, C., Santos, M.F.A., Gesto, D., Santos-Silva, T., Romao, M.J., Pereira, I.C.	+	Authors: Oliveira, A.R., Mota, C., Mourato, C., Domingos, R.M., Santos, M.F.A., Gesto, D., Guigliarelli, B., Santos-Silva, T., Romao, M.J., Pereira, I.C.

	Description: W-formate dehydrogenase from Desulfovibrio vulgaris -Oxidized form		Description: W-formate dehydrogenase from Desulfovibrio vulgaris -Oxidized form
	[[Category: Unreleased Structures]]		[[Category: Unreleased Structures]]
	[[Category: Santos, M.F.A]]		[[Category: Santos, M.F.A]]
		+	[[Category: Domingos, R.M]]
	[[Category: Gesto, D]]		[[Category: Gesto, D]]
		+	[[Category: Guigliarelli, B]]
	[[Category: Pereira, I.C]]		[[Category: Pereira, I.C]]
	[[Category: Mota, C]]		[[Category: Mota, C]]

OCA: Protected "6sdr" [edit=sysop:move=sysop]

OCA — Wed, 07 Aug 2019 04:29:48 GMT

Protected "6sdr" [edit=sysop:move=sysop]

←Older revision

Revision as of 04:29, 7 August 2019

OCA: New page: '''Unreleased structure''' The entry 6sdr is ON HOLD Authors: Oliveira, A.R., Mota, C., Mourato, C., Santos, M.F.A., Gesto, D., Santos-Silva, T., Romao, M.J., Pereira, I.C. Description...

OCA — Wed, 07 Aug 2019 04:29:46 GMT

New page: '''Unreleased structure''' The entry 6sdr is ON HOLD Authors: Oliveira, A.R., Mota, C., Mourato, C., Santos, M.F.A., Gesto, D., Santos-Silva, T., Romao, M.J., Pereira, I.C. Description...

New page

'''Unreleased structure'''

The entry 6sdr is ON HOLD

Authors: Oliveira, A.R., Mota, C., Mourato, C., Santos, M.F.A., Gesto, D., Santos-Silva, T., Romao, M.J., Pereira, I.C.

Description: W-formate dehydrogenase from Desulfovibrio vulgaris -Oxidized form
[[Category: Unreleased Structures]]
[[Category: Santos, M.F.A]]
[[Category: Gesto, D]]
[[Category: Pereira, I.C]]
[[Category: Mota, C]]
[[Category: Santos-Silva, T]]
[[Category: Romao, M.J]]
[[Category: Mourato, C]]
[[Category: Oliveira, A.R]]