6sxn - Revision history

OCA at 12:49, 24 January 2024

OCA — Wed, 24 Jan 2024 12:49:53 GMT

←Older revision		Revision as of 12:49, 24 January 2024
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	==Crystal structure of P212121 apo form of CrtE==		==Crystal structure of P212121 apo form of CrtE==
-	<StructureSection load='6sxn' size='340' side='right'caption='[[6sxn]]' scene=''>	+	<StructureSection load='6sxn' size='340' side='right'caption='[[6sxn]], [[Resolution\|resolution]] 2.66Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6SXN OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://proteopedia.org/fgij/fg.htm?mol=6SXN FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[6sxn]] is a 6 chain structure with sequence from [https://en.wikipedia.org/wiki/Synechococcus_sp._PCC_7002 Synechococcus sp. PCC 7002]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6SXN OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=6SXN FirstGlance]. <br>
-	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://proteopedia.org/fgij/fg.htm?mol=6sxn FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6sxn OCA], [~~http~~://pdbe.org/6sxn PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=6sxn RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/6sxn PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=6sxn ProSAT]</span></td></tr>	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 2.66Å</td></tr>
		+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=6sxn FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6sxn OCA], [https://pdbe.org/6sxn PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=6sxn RCSB], [https://www.ebi.ac.uk/pdbsum/6sxn PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=6sxn ProSAT]</span></td></tr>
	</table>		</table>
		+	== Function ==
		+	[https://www.uniprot.org/uniprot/CRTE_SYNP2 CRTE_SYNP2] Catalyzes the sequential condensation of three molecules of isopentenyl diphosphate (IPP) onto dimethylallyl diphosphate (DMAPP) to yield geranylgeranyl diphosphate (GGPP). Thereby, is a key enzyme for the biosynthesis of terpenenoids.<ref>PMID:32523588</ref>
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	Cyanobacteria are photosynthetic prokaryotes that perform oxygenic photosynthesis. Due to their ability to use the photon energy of sunlight to fix carbon dioxide into biomass, cyanobacteria are promising hosts for the sustainable production of terpenoids, also known as isoprenoids, a diverse class of natural products with potential as advanced biofuels and high-value chemicals. However, the cyanobacterial enzymes involved in the biosynthesis of the terpene precursors needed to make more complicated terpenoids are poorly characterized. Here we show that the predicted type II prenyltransferase CrtE encoded by the model cyanobacterium Synechococcus sp. PCC 7002 is homodimeric and able to synthesize C20-geranylgeranyl pyrophosphate (GGPP) from C5-isopentenyl pyrophosphate (IPP) and C5-dimethylallyl pyrophosphate (DMAPP). The crystal structure of CrtE solved to a resolution of 2.7 A revealed a strong structural similarity to the large subunit of the heterodimeric geranylgeranyl pyrophosphate synthase 1 from Arabidopsis thaliana with each subunit containing 14 helices. Using mutagenesis, we confirmed that the fourth and fifth amino acids (Met-87 and Ser-88) before the first conserved aspartate-rich motif (FARM) play important roles in controlling chain elongation. While the WT enzyme specifically produced GGPP, variants M87F and S88Y could only generate C15-farnesyl pyrophosphate (FPP), indicating that residues with large side chains obstruct product elongation. In contrast, replacement of M87 with the smaller Ala residue allowed the formation of the longer C25-geranylfarnesyl pyrophosphate (GFPP) product. Overall, our results provide new structural and functional information on the cyanobacterial CrtE enzyme that could lead to the development of improved cyanobacterial platforms for terpenoid production.
		+
		+	Crystal Structure of Geranylgeranyl Pyrophosphate Synthase (CrtE) Involved in Cyanobacterial Terpenoid Biosynthesis.,Feng Y, Morgan RML, Fraser PD, Hellgardt K, Nixon PJ Front Plant Sci. 2020 May 25;11:589. doi: 10.3389/fpls.2020.00589. eCollection, 2020. PMID:32523588<ref>PMID:32523588</ref>
		+
		+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
		+	</div>
		+	<div class="pdbe-citations 6sxn" style="background-color:#fffaf0;"></div>
		+
		+	==See Also==
		+	*[[Geranylgeranyl pyrophosphate synthase 3D structures\|Geranylgeranyl pyrophosphate synthase 3D structures]]
		+	== References ==
		+	<references/>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
	[[Category: Large Structures]]		[[Category: Large Structures]]
		+	[[Category: Synechococcus sp. PCC 7002]]
	[[Category: Feng Y]]		[[Category: Feng Y]]
	[[Category: Morgan RML]]		[[Category: Morgan RML]]
	[[Category: Nixon PJ]]		[[Category: Nixon PJ]]

OCA at 06:21, 25 June 2020

OCA — Thu, 25 Jun 2020 06:21:28 GMT

←Older revision		Revision as of 06:21, 25 June 2020
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-	'''Unreleased structure'''

-	~~The entry~~ 6sxn ~~is ON HOLD~~	+	==Crystal structure of P212121 apo form of CrtE==
-		+	<StructureSection load='6sxn' size='340' side='right'caption='[[6sxn]]' scene=''>
-	~~Authors~~: ~~Feng~~, Y., ~~Morgan~~, R.M.L., ~~Nixon~~, P.J.	+	== Structural highlights ==
-		+	<table><tr><td colspan='2'>Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6SXN OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=6SXN FirstGlance]. <br>
-	~~Description: Crystal structure of P212121 apo form of CrtE~~	+	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=6sxn FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6sxn OCA], [http://pdbe.org/6sxn PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6sxn RCSB], [http://www.ebi.ac.uk/pdbsum/6sxn PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6sxn ProSAT]</span></td></tr>
-	[[Category: ~~Unreleased~~ Structures]]	+	</table>
-	[[Category: ~~Nixon, P.J~~]]	+	__TOC__
-	[[Category: ~~Feng, Y~~]]	+	</StructureSection>
-	[[Category: ~~Morgan, R.M.L~~]]	+	[[Category: Large Structures]]
		+	[[Category: Feng Y]]
		+	[[Category: Morgan RML]]
		+	[[Category: Nixon PJ]]

OCA at 05:18, 15 April 2020

OCA — Wed, 15 Apr 2020 05:18:06 GMT

←Older revision		Revision as of 05:18, 15 April 2020
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	'''Unreleased structure'''		'''Unreleased structure'''

-	The entry 6sxn is ON HOLD ~~until sometime in the future~~	+	The entry 6sxn is ON HOLD

	Authors: Feng, Y., Morgan, R.M.L., Nixon, P.J.		Authors: Feng, Y., Morgan, R.M.L., Nixon, P.J.

OCA: Protected "6sxn" [edit=sysop:move=sysop]

OCA — Wed, 02 Oct 2019 07:59:56 GMT

Protected "6sxn" [edit=sysop:move=sysop]

←Older revision

Revision as of 07:59, 2 October 2019

OCA: New page: '''Unreleased structure''' The entry 6sxn is ON HOLD until sometime in the future Authors: Feng, Y., Morgan, R.M.L., Nixon, P.J. Description: Crystal structure of P212121 apo form of C...

OCA — Wed, 02 Oct 2019 07:59:54 GMT

New page: '''Unreleased structure''' The entry 6sxn is ON HOLD until sometime in the future Authors: Feng, Y., Morgan, R.M.L., Nixon, P.J. Description: Crystal structure of P212121 apo form of C...

New page

'''Unreleased structure'''

The entry 6sxn is ON HOLD until sometime in the future

Authors: Feng, Y., Morgan, R.M.L., Nixon, P.J.

Description: Crystal structure of P212121 apo form of CrtE
[[Category: Unreleased Structures]]
[[Category: Nixon, P.J]]
[[Category: Feng, Y]]
[[Category: Morgan, R.M.L]]