6t0v - Revision history

OCA at 10:17, 22 May 2024

OCA — Wed, 22 May 2024 10:17:06 GMT

←Older revision		Revision as of 10:17, 22 May 2024
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	<StructureSection load='6t0v' size='340' side='right'caption='[[6t0v]], [[Resolution\|resolution]] 3.02Å' scene=''>		<StructureSection load='6t0v' size='340' side='right'caption='[[6t0v]], [[Resolution\|resolution]] 3.02Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[6t0v]] is a 6 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/~~Influenza_a_virus_~~(a/little_yellow-shouldered_bat/~~guatemala~~/060/2010(~~h17n10~~)) Influenza a virus (a/little yellow-shouldered bat/~~guatemala~~/060/2010(~~h17n10~~))]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6T0V OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://proteopedia.org/fgij/fg.htm?mol=6T0V FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[6t0v]] is a 6 chain structure with sequence from [https://en.wikipedia.org/wiki/Influenza_A_virus_(A/little_yellow-shouldered_bat/Guatemala/060/2010(H17N10)) Influenza A virus (A/little yellow-shouldered bat/Guatemala/060/2010(H17N10))]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6T0V OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=6T0V FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=2KH:5-O-[(S)-HYDROXY{[(S)-HYDROXY(PHOSPHONOOXY)PHOSPHORYL]AMINO}PHOSPHORYL]URIDINE'>2KH</scene>, <scene name='pdbligand=M4H:5-oxidanyl-4-oxidanylidene-1-[(1-pyrrolo[2,3-b]pyridin-1-ylcyclopentyl)methyl]pyridine-3-carboxylic+acid'>M4H</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene~~></td></tr>~~	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">Electron Microscopy, [[Resolution\|Resolution]] 3.02Å</td></tr>
-	<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=GTG:7-METHYL-GUANOSINE-5-TRIPHOSPHATE-5-GUANOSINE'>GTG</scene></td></tr>	+	<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=2KH:5-O-[(S)-HYDROXY{[(S)-HYDROXY(PHOSPHONOOXY)PHOSPHORYL]AMINO}PHOSPHORYL]URIDINE'>2KH</scene>, <scene name='pdbligand=GTG:7-METHYL-GUANOSINE-5-TRIPHOSPHATE-5-GUANOSINE'>GTG</scene>, <scene name='pdbligand=M4H:5-oxidanyl-4-oxidanylidene-1-[(1-pyrrolo[2,3-b]pyridin-1-ylcyclopentyl)methyl]pyridine-3-carboxylic+acid'>M4H</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr>
-	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">PA ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1129347 Influenza A virus (A/little yellow-shouldered bat/Guatemala/060/2010(H17N10))]), PB1 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1129347 Influenza A virus (A/little yellow-shouldered bat/Guatemala/060/2010(H17N10))]), PB2 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1129347 Influenza A virus (A/little yellow-shouldered bat/Guatemala/060/2010(H17N10))])</td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=6t0v FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6t0v OCA], [https://pdbe.org/6t0v PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=6t0v RCSB], [https://www.ebi.ac.uk/pdbsum/6t0v PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=6t0v ProSAT]</span></td></tr>
-	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/RNA-directed_RNA_polymerase RNA-directed RNA polymerase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.7.7.48 2.7.7.48] </span></td></tr>	+
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://proteopedia.org/fgij/fg.htm?mol=6t0v FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6t0v OCA], [~~http~~://pdbe.org/6t0v PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=6t0v RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/6t0v PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=6t0v ProSAT]</span></td></tr>	+
	</table>		</table>
		+	== Function ==
		+	[https://www.uniprot.org/uniprot/H6QM92_9INFA H6QM92_9INFA]
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
	== Publication Abstract from PubMed ==		== Publication Abstract from PubMed ==
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	</div>		</div>
	<div class="pdbe-citations 6t0v" style="background-color:#fffaf0;"></div>		<div class="pdbe-citations 6t0v" style="background-color:#fffaf0;"></div>
		+
		+	==See Also==
		+	*[[RNA polymerase 3D structures\|RNA polymerase 3D structures]]
	== References ==		== References ==
	<references/>		<references/>
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	</StructureSection>		</StructureSection>
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	~~[[Category: RNA-directed RNA polymerase]]~~	+	[[Category: Cusack S]]
-	[[Category: Cusack, S]]	+	[[Category: Kouba T]]
-	[[Category: Kouba, T]]	+	[[Category: Wandzik JM]]
-	[[Category: Wandzik~~, J M]]~~	+
-	~~[[Category: Influenza]]~~	+
-	~~[[Category: Polymerase]]~~	+
-	~~[[Category: Rna]]~~	+
-	~~[[Category: Viral protein]]~~	+
-	~~[[Category: Viral transcription~~]]	+

OCA at 07:06, 29 April 2020

OCA — Wed, 29 Apr 2020 07:06:48 GMT

←Older revision		Revision as of 07:06, 29 April 2020
Line 1:		Line 1:

	==Bat Influenza A polymerase elongation complex with incoming UTP analogue (complete polymerase)==		==Bat Influenza A polymerase elongation complex with incoming UTP analogue (complete polymerase)==
-	<StructureSection load='6t0v' size='340' side='right'caption='[[6t0v]]' scene=''>	+	<StructureSection load='6t0v' size='340' side='right'caption='[[6t0v]], [[Resolution\|resolution]] 3.02Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6T0V OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=6T0V FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[6t0v]] is a 6 chain structure with sequence from [http://en.wikipedia.org/wiki/Influenza_a_virus_(a/little_yellow-shouldered_bat/guatemala/060/2010(h17n10)) Influenza a virus (a/little yellow-shouldered bat/guatemala/060/2010(h17n10))]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6T0V OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=6T0V FirstGlance]. <br>
-	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=6t0v FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6t0v OCA], [http://pdbe.org/6t0v PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6t0v RCSB], [http://www.ebi.ac.uk/pdbsum/6t0v PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6t0v ProSAT]</span></td></tr>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=2KH:5-O-[(S)-HYDROXY{[(S)-HYDROXY(PHOSPHONOOXY)PHOSPHORYL]AMINO}PHOSPHORYL]URIDINE'>2KH</scene>, <scene name='pdbligand=M4H:5-oxidanyl-4-oxidanylidene-1-[(1-pyrrolo[2,3-b]pyridin-1-ylcyclopentyl)methyl]pyridine-3-carboxylic+acid'>M4H</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr>
		+	<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=GTG:7-METHYL-GUANOSINE-5-TRIPHOSPHATE-5-GUANOSINE'>GTG</scene></td></tr>
		+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">PA ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1129347 Influenza A virus (A/little yellow-shouldered bat/Guatemala/060/2010(H17N10))]), PB1 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1129347 Influenza A virus (A/little yellow-shouldered bat/Guatemala/060/2010(H17N10))]), PB2 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1129347 Influenza A virus (A/little yellow-shouldered bat/Guatemala/060/2010(H17N10))])</td></tr>
		+	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/RNA-directed_RNA_polymerase RNA-directed RNA polymerase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.7.7.48 2.7.7.48] </span></td></tr>
		+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=6t0v FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6t0v OCA], [http://pdbe.org/6t0v PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6t0v RCSB], [http://www.ebi.ac.uk/pdbsum/6t0v PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6t0v ProSAT]</span></td></tr>
	</table>		</table>
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	Influenza polymerase uses unique mechanisms to synthesize capped and polyadenylated mRNAs from the genomic viral RNA (vRNA) template, which is packaged inside ribonucleoprotein particles (vRNPs). Here, we visualize by cryoelectron microscopy the conformational dynamics of the polymerase during the complete transcription cycle from pre-initiation to termination, focusing on the template trajectory. After exiting the active site cavity, the template 3' extremity rebinds into a specific site on the polymerase surface. Here, it remains sequestered during all subsequent transcription steps, forcing the template to loop out as it further translocates. At termination, the strained connection between the bound template 5' end and the active site results in polyadenylation by stuttering at uridine 17. Upon product dissociation, further conformational changes release the trapped template, allowing recycling back into the pre-initiation state. Influenza polymerase thus performs transcription while tightly binding to and protecting both template ends, allowing efficient production of multiple mRNAs from a single vRNP.
		+
		+	A Structure-Based Model for the Complete Transcription Cycle of Influenza Polymerase.,Wandzik JM, Kouba T, Karuppasamy M, Pflug A, Drncova P, Provaznik J, Azevedo N, Cusack S Cell. 2020 Apr 16. pii: S0092-8674(20)30389-5. doi: 10.1016/j.cell.2020.03.061. PMID:32304664<ref>PMID:32304664</ref>
		+
		+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
		+	</div>
		+	<div class="pdbe-citations 6t0v" style="background-color:#fffaf0;"></div>
		+	== References ==
		+	<references/>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: Cusack S]]	+	[[Category: RNA-directed RNA polymerase]]
-	[[Category: Kouba T]]	+	[[Category: Cusack, S]]
-	[[Category: Wandzik JM]]	+	[[Category: Kouba, T]]
		+	[[Category: Wandzik, J M]]
		+	[[Category: Influenza]]
		+	[[Category: Polymerase]]
		+	[[Category: Rna]]
		+	[[Category: Viral protein]]
		+	[[Category: Viral transcription]]

OCA at 06:59, 15 April 2020

OCA — Wed, 15 Apr 2020 06:59:37 GMT

←Older revision		Revision as of 06:59, 15 April 2020
Line 1:		Line 1:
-	'''Unreleased structure'''

-	~~The entry~~ 6t0v is ~~ON HOLD~~	+	==Bat Influenza A polymerase elongation complex with incoming UTP analogue (complete polymerase)==
-		+	<StructureSection load='6t0v' size='340' side='right'caption='[[6t0v]]' scene=''>
-	~~Authors~~:	+	== Structural highlights ==
-		+	<table><tr><td colspan='2'>Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6T0V OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=6T0V FirstGlance]. <br>
-	~~Description~~:	+	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=6t0v FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6t0v OCA], [http://pdbe.org/6t0v PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6t0v RCSB], [http://www.ebi.ac.uk/pdbsum/6t0v PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6t0v ProSAT]</span></td></tr>
-	[[Category: ~~Unreleased Structures~~]]	+	</table>
		+	__TOC__
		+	</StructureSection>
		+	[[Category: Large Structures]]
		+	[[Category: Cusack S]]
		+	[[Category: Kouba T]]
		+	[[Category: Wandzik JM]]

OCA: Protected "6t0v" [edit=sysop:move=sysop]

OCA — Thu, 10 Oct 2019 03:49:06 GMT

Protected "6t0v" [edit=sysop:move=sysop]

←Older revision

Revision as of 03:49, 10 October 2019

OCA: New page: '''Unreleased structure''' The entry 6t0v is ON HOLD Authors: Description: Category: Unreleased Structures

OCA — Thu, 10 Oct 2019 03:49:05 GMT

New page: '''Unreleased structure''' The entry 6t0v is ON HOLD Authors: Description: Category: Unreleased Structures

New page

'''Unreleased structure'''

The entry 6t0v is ON HOLD

Authors:

Description:
[[Category: Unreleased Structures]]