OCA at 13:12, 24 January 2024

OCA — Wed, 24 Jan 2024 13:12:05 GMT

←Older revision		Revision as of 13:12, 24 January 2024
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-	====	+	==Crystal structure of the haemagglutinin mutant (Gln226Leu, Gly228Ser) from an H10N7 seal influenza virus isolated in Germany in complex with human receptor analogue 6'-SLN==
-	<StructureSection load='6ty1' size='340' side='right'caption='[[6ty1]]' scene=''>	+	<StructureSection load='6ty1' size='340' side='right'caption='[[6ty1]], [[Resolution\|resolution]] 3.20Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id= OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://proteopedia.org/fgij/fg.htm?mol= FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[6ty1]] is a 12 chain structure with sequence from [https://en.wikipedia.org/wiki/Influenza_A_virus_(A/harbour_seal/Germany/1/2014(H10N7)) Influenza A virus (A/harbour seal/Germany/1/2014(H10N7))]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6TY1 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=6TY1 FirstGlance]. <br>
-	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://proteopedia.org/fgij/fg.htm?mol=6ty1 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6ty1 OCA], [~~http~~://pdbe.org/6ty1 PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=6ty1 RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/6ty1 PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=6ty1 ProSAT]</span></td></tr>	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 3.2Å</td></tr>
		+	<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=GAL:BETA-D-GALACTOSE'>GAL</scene>, <scene name='pdbligand=NAG:N-ACETYL-D-GLUCOSAMINE'>NAG</scene>, <scene name='pdbligand=PRD_900046:6-sialyl-N-acetyllactosamine'>PRD_900046</scene>, <scene name='pdbligand=SIA:O-SIALIC+ACID'>SIA</scene></td></tr>
		+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=6ty1 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6ty1 OCA], [https://pdbe.org/6ty1 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=6ty1 RCSB], [https://www.ebi.ac.uk/pdbsum/6ty1 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=6ty1 ProSAT]</span></td></tr>
	</table>		</table>
		+	== Function ==
		+	[https://www.uniprot.org/uniprot/A0A0A7HR51_9INFA A0A0A7HR51_9INFA] Binds to sialic acid-containing receptors on the cell surface, bringing about the attachment of the virus particle to the cell. This attachment induces virion internalization of about two third of the virus particles through clathrin-dependent endocytosis and about one third through a clathrin- and caveolin-independent pathway. Plays a major role in the determination of host range restriction and virulence. Class I viral fusion protein. Responsible for penetration of the virus into the cell cytoplasm by mediating the fusion of the membrane of the endocytosed virus particle with the endosomal membrane. Low pH in endosomes induces an irreversible conformational change in HA2, releasing the fusion hydrophobic peptide. Several trimers are required to form a competent fusion pore.[RuleBase:RU003324]
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	In 2014, an outbreak of avian A/H10N7 influenza virus occurred among seals along North-European coastal waters, significantly impacting seal populations. Here, we examine the cross-species transmission and mammalian adaptation of this influenza A virus, revealing changes in the hemagglutinin surface protein that increase stability and receptor binding. The seal A/H10N7 virus was aerosol or respiratory droplet transmissible between ferrets. Compared with avian H10 hemagglutinin, seal H10 hemagglutinin showed stronger binding to the human-type sialic acid receptor, with preferential binding to alpha2,6-linked sialic acids on long extended branches. In X-ray structures, changes in the 220-loop of the receptor-binding pocket caused similar interactions with human receptor as seen for pandemic strains. Two substitutions made seal H10 hemagglutinin more stable than avian H10 hemagglutinin and similar to human hemagglutinin. Consequently, identification of avian-origin influenza viruses across mammals appears critical to detect influenza A viruses posing a major threat to humans and other mammals.
		+
		+	Hemagglutinin Traits Determine Transmission of Avian A/H10N7 Influenza Virus between Mammals.,Herfst S, Zhang J, Richard M, McBride R, Lexmond P, Bestebroer TM, Spronken MIJ, de Meulder D, van den Brand JM, Rosu ME, Martin SR, Gamblin SJ, Xiong X, Peng W, Bodewes R, van der Vries E, Osterhaus ADME, Paulson JC, Skehel JJ, Fouchier RAM Cell Host Microbe. 2020 Oct 7;28(4):602-613.e7. doi: 10.1016/j.chom.2020.08.011. PMID:33031770<ref>PMID:33031770</ref>
		+
		+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
		+	</div>
		+	<div class="pdbe-citations 6ty1" style="background-color:#fffaf0;"></div>
		+
		+	==See Also==
		+	*[[Hemagglutinin 3D structures\|Hemagglutinin 3D structures]]
		+	== References ==
		+	<references/>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: ~~Z-disk~~]]	+	[[Category: Gamblin S]]
		+	[[Category: Purkiss A]]
		+	[[Category: Skehel JJ]]
		+	[[Category: Walker P]]
		+	[[Category: Xiong X]]
		+	[[Category: Zhang J]]

OCA at 08:14, 21 October 2020

OCA — Wed, 21 Oct 2020 08:14:06 GMT

←Older revision		Revision as of 08:14, 21 October 2020
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-	'''Unreleased structure'''

-	~~The entry~~ 6ty1 ~~is ON HOLD until Paper Publication~~	+	====
-		+	<StructureSection load='6ty1' size='340' side='right'caption='[[6ty1]]' scene=''>
-	~~Authors~~:	+	== Structural highlights ==
-		+	<table><tr><td colspan='2'>Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id= OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol= FirstGlance]. <br>
-	~~Description~~:	+	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=6ty1 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6ty1 OCA], [http://pdbe.org/6ty1 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6ty1 RCSB], [http://www.ebi.ac.uk/pdbsum/6ty1 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6ty1 ProSAT]</span></td></tr>
-	[[Category: ~~Unreleased~~ Structures]]	+	</table>
		+	__TOC__
		+	</StructureSection>
		+	[[Category: Large Structures]]
		+	[[Category: Z-disk]]

OCA at 06:27, 22 July 2020

OCA — Wed, 22 Jul 2020 06:27:50 GMT

←Older revision		Revision as of 06:27, 22 July 2020
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	'''Unreleased structure'''		'''Unreleased structure'''

-	The entry 6ty1 is ON HOLD	+	The entry 6ty1 is ON HOLD until Paper Publication

	Authors:		Authors:

OCA: Protected "6ty1" [edit=sysop:move=sysop]

OCA — Wed, 22 Jan 2020 14:07:02 GMT

Protected "6ty1" [edit=sysop:move=sysop]

←Older revision

Revision as of 14:07, 22 January 2020

OCA: New page: '''Unreleased structure''' The entry 6ty1 is ON HOLD Authors: Description: Category: Unreleased Structures

OCA — Wed, 22 Jan 2020 14:07:01 GMT

New page: '''Unreleased structure''' The entry 6ty1 is ON HOLD Authors: Description: Category: Unreleased Structures

New page

'''Unreleased structure'''

The entry 6ty1 is ON HOLD

Authors:

Description:
[[Category: Unreleased Structures]]

6ty1 - Revision history

OCA at 13:12, 24 January 2024

OCA at 08:14, 21 October 2020

OCA at 06:27, 22 July 2020

OCA: Protected "6ty1" [edit=sysop:move=sysop]

OCA: New page: '''Unreleased structure''' The entry 6ty1 is ON HOLD Authors: Description: Category: Unreleased Structures