6udk - Revision history

OCA at 06:46, 11 April 2020

OCA — Sat, 11 Apr 2020 06:46:07 GMT

←Older revision		Revision as of 06:46, 11 April 2020
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	<SX load='6udk' size='340' side='right' viewer='molstar' caption='[[6udk]], [[Resolution\|resolution]] 3.90Å' scene=''>		<SX load='6udk' size='340' side='right' viewer='molstar' caption='[[6udk]], [[Resolution\|resolution]] 3.90Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[6udk]] is a 18 chain structure with sequence from [http://en.wikipedia.org/wiki/9hiv1 9hiv1] and [http://en.wikipedia.org/wiki/Human Human]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6UDK OCA]. For a <b>guided tour on the structure components</b> use [http://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=6UDK FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[6udk]] is a 18 chain structure with sequence from [http://en.wikipedia.org/wiki/9hiv1 9hiv1] and [http://en.wikipedia.org/wiki/Human Human]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6UDK OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=6UDK FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=BMA:BETA-D-MANNOSE'>BMA</scene>, <scene name='pdbligand=MAN:ALPHA-D-MANNOSE'>MAN</scene>, <scene name='pdbligand=NAG:N-ACETYL-D-GLUCOSAMINE'>NAG</scene></td></tr>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=BMA:BETA-D-MANNOSE'>BMA</scene>, <scene name='pdbligand=MAN:ALPHA-D-MANNOSE'>MAN</scene>, <scene name='pdbligand=NAG:N-ACETYL-D-GLUCOSAMINE'>NAG</scene></td></tr>
	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[6orn\|6orn]]</td></tr>		<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[6orn\|6orn]]</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=6udk FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6udk OCA], [http://pdbe.org/6udk PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6udk RCSB], [http://www.ebi.ac.uk/pdbsum/6udk PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6udk ProSAT]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=6udk FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6udk OCA], [http://pdbe.org/6udk PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6udk RCSB], [http://www.ebi.ac.uk/pdbsum/6udk PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6udk ProSAT]</span></td></tr>
	</table>		</table>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">

OCA at 01:09, 7 March 2020

OCA — Sat, 07 Mar 2020 01:09:35 GMT

←Older revision		Revision as of 01:09, 7 March 2020
Line 1:		Line 1:

	==HIV-1 bNAb 1-55 in complex with modified BG505 SOSIP-based immunogen RC1 and 10-1074==		==HIV-1 bNAb 1-55 in complex with modified BG505 SOSIP-based immunogen RC1 and 10-1074==
-	<~~StructureSection~~ load='6udk' size='340' side='right'caption='[[6udk]], [[Resolution\|resolution]] 3.90Å' scene=''>	+	<SX load='6udk' size='340' side='right' viewer='molstar' caption='[[6udk]], [[Resolution\|resolution]] 3.90Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[6udk]] is a 18 chain structure with sequence from [http://en.wikipedia.org/wiki/9hiv1 9hiv1] and [http://en.wikipedia.org/wiki/Human Human]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6UDK OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6UDK FirstGlance]. <br>		<table><tr><td colspan='2'>[[6udk]] is a 18 chain structure with sequence from [http://en.wikipedia.org/wiki/9hiv1 9hiv1] and [http://en.wikipedia.org/wiki/Human Human]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6UDK OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6UDK FirstGlance]. <br>
Line 20:		Line 20:
	<references/>		<references/>
	__TOC__		__TOC__
-	</~~StructureSection~~>	+	</SX>
	[[Category: Human]]		[[Category: Human]]
	[[Category: Large Structures]]		[[Category: Large Structures]]

OCA at 04:46, 13 February 2020

OCA — Thu, 13 Feb 2020 04:46:55 GMT

←Older revision		Revision as of 04:46, 13 February 2020
Line 3:		Line 3:
	<StructureSection load='6udk' size='340' side='right'caption='[[6udk]], [[Resolution\|resolution]] 3.90Å' scene=''>		<StructureSection load='6udk' size='340' side='right'caption='[[6udk]], [[Resolution\|resolution]] 3.90Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[6udk]] is a 18 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6UDK OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6UDK FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[6udk]] is a 18 chain structure with sequence from [http://en.wikipedia.org/wiki/9hiv1 9hiv1] and [http://en.wikipedia.org/wiki/Human Human]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6UDK OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6UDK FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=BMA:BETA-D-MANNOSE'>BMA</scene>, <scene name='pdbligand=MAN:ALPHA-D-MANNOSE'>MAN</scene>, <scene name='pdbligand=NAG:N-ACETYL-D-GLUCOSAMINE'>NAG</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=BMA:BETA-D-MANNOSE'>BMA</scene>, <scene name='pdbligand=MAN:ALPHA-D-MANNOSE'>MAN</scene>, <scene name='pdbligand=NAG:N-ACETYL-D-GLUCOSAMINE'>NAG</scene></td></tr>
		+	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[6orn\|6orn]]</td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6udk FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6udk OCA], [http://pdbe.org/6udk PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6udk RCSB], [http://www.ebi.ac.uk/pdbsum/6udk PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6udk ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6udk FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6udk OCA], [http://pdbe.org/6udk PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6udk RCSB], [http://www.ebi.ac.uk/pdbsum/6udk PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6udk ProSAT]</span></td></tr>
	</table>		</table>
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	Broadly neutralizing antibodies (bNAbs) represent a promising approach to prevent and treat HIV-1 infection. However, viral escape through mutation of the HIV-1 envelope glycoprotein (Env) limits clinical applications. Here we describe 1-18, a new VH1-46-encoded CD4 binding site (CD4bs) bNAb with outstanding breadth (97%) and potency (GeoMean IC50 = 0.048 mug/mL). Notably, 1-18 is not susceptible to typical CD4bs escape mutations and effectively overcomes HIV-1 resistance to other CD4bs bNAbs. Moreover, mutational antigenic profiling uncovered restricted pathways of HIV-1 escape. Of most promise for therapeutic use, even 1-18 alone fully suppressed viremia in HIV-1-infected humanized mice without selecting for resistant viral variants. A 2.5-A cryo-EM structure of a 1-18-BG505SOSIP.664 Env complex revealed that these characteristics are likely facilitated by a heavy-chain insertion and increased inter-protomer contacts. The ability of 1-18 to effectively restrict HIV-1 escape pathways provides a new option to successfully prevent and treat HIV-1 infection.
		+
		+	Restriction of HIV-1 Escape by a Highly Broad and Potent Neutralizing Antibody.,Schommers P, Gruell H, Abernathy ME, Tran MK, Dingens AS, Gristick HB, Barnes CO, Schoofs T, Schlotz M, Vanshylla K, Kreer C, Weiland D, Holtick U, Scheid C, Valter MM, van Gils MJ, Sanders RW, Vehreschild JJ, Cornely OA, Lehmann C, Fatkenheuer G, Seaman MS, Bloom JD, Bjorkman PJ, Klein F Cell. 2020 Feb 6;180(3):471-489.e22. doi: 10.1016/j.cell.2020.01.010. Epub 2020, Jan 30. PMID:32004464<ref>PMID:32004464</ref>
		+
		+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
		+	</div>
		+	<div class="pdbe-citations 6udk" style="background-color:#fffaf0;"></div>
		+	== References ==
		+	<references/>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
		+	[[Category: Human]]
	[[Category: Large Structures]]		[[Category: Large Structures]]
	[[Category: Abernathy, M E]]		[[Category: Abernathy, M E]]

OCA at 15:44, 29 January 2020

OCA — Wed, 29 Jan 2020 15:44:49 GMT

←Older revision		Revision as of 15:44, 29 January 2020
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-	'''Unreleased structure'''

-	~~The entry~~ 6udk ~~is ON HOLD until Paper Publication~~	+	==HIV-1 bNAb 1-55 in complex with modified BG505 SOSIP-based immunogen RC1 and 10-1074==
-		+	<StructureSection load='6udk' size='340' side='right'caption='[[6udk]], [[Resolution\|resolution]] 3.90Å' scene=''>
-	~~Authors~~:	+	== Structural highlights ==
-		+	<table><tr><td colspan='2'>[[6udk]] is a 18 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6UDK OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6UDK FirstGlance]. <br>
-	~~Description~~:	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=BMA:BETA-D-MANNOSE'>BMA</scene>, <scene name='pdbligand=MAN:ALPHA-D-MANNOSE'>MAN</scene>, <scene name='pdbligand=NAG:N-ACETYL-D-GLUCOSAMINE'>NAG</scene></td></tr>
-	[[Category: ~~Unreleased~~ Structures]]	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6udk FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6udk OCA], [http://pdbe.org/6udk PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6udk RCSB], [http://www.ebi.ac.uk/pdbsum/6udk PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6udk ProSAT]</span></td></tr>
		+	</table>
		+	__TOC__
		+	</StructureSection>
		+	[[Category: Large Structures]]
		+	[[Category: Abernathy, M E]]
		+	[[Category: Barnes, C O]]
		+	[[Category: Bjorkman, P J]]
		+	[[Category: Gristick, H B]]
		+	[[Category: Bnab]]
		+	[[Category: Cd4-binding site]]
		+	[[Category: Cryo-em]]
		+	[[Category: Env trimer]]
		+	[[Category: Hiv-1 broadly neutralizing antibody]]
		+	[[Category: Rc1]]
		+	[[Category: Viral protein-immune system complex]]

OCA: Protected "6udk" [edit=sysop:move=sysop]

OCA — Wed, 02 Oct 2019 08:38:47 GMT

Protected "6udk" [edit=sysop:move=sysop]

←Older revision

Revision as of 08:38, 2 October 2019

OCA: New page: '''Unreleased structure''' The entry 6udk is ON HOLD until Paper Publication Authors: Description: Category: Unreleased Structures

OCA — Wed, 02 Oct 2019 08:38:45 GMT

New page: '''Unreleased structure''' The entry 6udk is ON HOLD until Paper Publication Authors: Description: Category: Unreleased Structures

New page

'''Unreleased structure'''

The entry 6udk is ON HOLD until Paper Publication

Authors:

Description:
[[Category: Unreleased Structures]]