6uh4 - Revision history

OCA at 07:51, 11 October 2023

OCA — Wed, 11 Oct 2023 07:51:06 GMT

←Older revision		Revision as of 07:51, 11 October 2023
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	<StructureSection load='6uh4' size='340' side='right'caption='[[6uh4]], [[Resolution\|resolution]] 3.51Å' scene=''>		<StructureSection load='6uh4' size='340' side='right'caption='[[6uh4]], [[Resolution\|resolution]] 3.51Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[6uh4]] is a 4 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/~~"bacillus_thetaiotaomicron"_distaso_1912 "bacillus~~ thetaiotaomicron~~" distaso 1912~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6UH4 OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=6UH4 FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[6uh4]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Bacteroides_thetaiotaomicron Bacteroides thetaiotaomicron]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6UH4 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=6UH4 FirstGlance]. <br>
-	</td></tr><tr id='~~ligand~~'><td class="sblockLbl"><b>[[~~Ligand~~\|~~Ligands~~:]]</b></td><td class="sblockDat"~~><scene name='pdbligand=QC7:(5R,6R)-6-[(1S,2R,4aS,4bS,7R,8aS,10R,10aS)-7,10-dihydroxy-1,2,4b-trimethyltetradecahydrophenanthren-2-yl]-5-methylheptan-2-one'>QC7</scene></td></tr>~~	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 3.51Å</td></tr>
-	~~<tr~~ id~~='related'><td class~~="~~sblockLbl~~">~~<b>~~[[~~Related_structure~~\|~~Related:]]</b></td><td class="sblockDat">[[6ufy\|6ufy~~]]</td></tr>	+	<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=QC7:(5R,6R)-6-[(1S,2R,4aS,4bS,7R,8aS,10R,10aS)-7,10-dihydroxy-1,2,4b-trimethyltetradecahydrophenanthren-2-yl]-5-methylheptan-2-one'>QC7</scene></td></tr>
-	<tr id='~~gene~~'><td class="sblockLbl"><b>[[~~Gene~~\|~~Gene~~:]]</b></td><td class="sblockDat"~~>cbh_1, Btheta7330_00957, SAMN02910322_01222 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&~~id=~~818~~ "~~Bacillus thetaiotaomicron~~" ~~Distaso 1912])</td~~><~~/tr>~~	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=6uh4 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6uh4 OCA], [https://pdbe.org/6uh4 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=6uh4 RCSB], [https://www.ebi.ac.uk/pdbsum/6uh4 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=6uh4 ProSAT]</span></td></tr>
-	~~<tr id~~='~~activity'><td class~~=~~"sblockLbl"><b>Activity~~:~~</b></td><td class="sblockDat"><span class='plainlinks'>~~[~~http://en.wikipedia.org/wiki/Choloylglycine_hydrolase Choloylglycine hydrolase]~~, ~~with EC number [http://www.brenda~~-~~enzymes.info/php/result_flat.php4?ecno=3.5.~~1~~.24 3.~~5~~.1.24]~~ </~~span~~></td></tr>	+
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=6uh4 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6uh4 OCA], [~~http~~://pdbe.org/6uh4 PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=6uh4 RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/6uh4 PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=6uh4 ProSAT]</span></td></tr>	+
	</table>		</table>
		+	== Function ==
		+	[https://www.uniprot.org/uniprot/A0A0P0ENF5_BACT4 A0A0P0ENF5_BACT4]
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
	== Publication Abstract from PubMed ==		== Publication Abstract from PubMed ==
Line 19:		Line 19:
	</div>		</div>
	<div class="pdbe-citations 6uh4" style="background-color:#fffaf0;"></div>		<div class="pdbe-citations 6uh4" style="background-color:#fffaf0;"></div>
		+
		+	==See Also==
		+	*[[Beta-2 microglobulin 3D structures\|Beta-2 microglobulin 3D structures]]
	== References ==		== References ==
	<references/>		<references/>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: ~~Bacillus~~ thetaiotaomicron ~~distaso 1912]]~~	+	[[Category: Bacteroides thetaiotaomicron]]
-	~~[[Category: Choloylglycine hydrolase~~]]	+
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: Seegar~~, T C.M]]~~	+	[[Category: Seegar TCM]]
-	~~[[Category: Bile salt hydrolase b. theta]]~~	+
-	~~[[Category: Hydrolase-hydrolase inhibitor complex~~]]	+

OCA at 10:33, 26 February 2020

OCA — Wed, 26 Feb 2020 10:33:38 GMT

←Older revision		Revision as of 10:33, 26 February 2020
Line 3:		Line 3:
	<StructureSection load='6uh4' size='340' side='right'caption='[[6uh4]], [[Resolution\|resolution]] 3.51Å' scene=''>		<StructureSection load='6uh4' size='340' side='right'caption='[[6uh4]], [[Resolution\|resolution]] 3.51Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[6uh4]] is a 4 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6UH4 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6UH4 FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[6uh4]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/"bacillus_thetaiotaomicron"_distaso_1912 "bacillus thetaiotaomicron" distaso 1912]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6UH4 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6UH4 FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=QC7:(5R,6R)-6-[(1S,2R,4aS,4bS,7R,8aS,10R,10aS)-7,10-dihydroxy-1,2,4b-trimethyltetradecahydrophenanthren-2-yl]-5-methylheptan-2-one'>QC7</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=QC7:(5R,6R)-6-[(1S,2R,4aS,4bS,7R,8aS,10R,10aS)-7,10-dihydroxy-1,2,4b-trimethyltetradecahydrophenanthren-2-yl]-5-methylheptan-2-one'>QC7</scene></td></tr>
	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[6ufy\|6ufy]]</td></tr>		<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[6ufy\|6ufy]]</td></tr>
		+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">cbh_1, Btheta7330_00957, SAMN02910322_01222 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=818 "Bacillus thetaiotaomicron" Distaso 1912])</td></tr>
	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Choloylglycine_hydrolase Choloylglycine hydrolase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.5.1.24 3.5.1.24] </span></td></tr>		<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Choloylglycine_hydrolase Choloylglycine hydrolase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.5.1.24 3.5.1.24] </span></td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6uh4 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6uh4 OCA], [http://pdbe.org/6uh4 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6uh4 RCSB], [http://www.ebi.ac.uk/pdbsum/6uh4 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6uh4 ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6uh4 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6uh4 OCA], [http://pdbe.org/6uh4 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6uh4 RCSB], [http://www.ebi.ac.uk/pdbsum/6uh4 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6uh4 ProSAT]</span></td></tr>
	</table>		</table>
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	Bile salt hydrolase (BSH) enzymes are widely expressed by human gut bacteria and catalyze the gateway reaction leading to secondary bile acid formation. Bile acids regulate key metabolic and immune processes by binding to host receptors. There is an unmet need for a potent tool to inhibit BSHs across all gut bacteria to study the effects of bile acids on host physiology. Here, we report the development of a covalent pan-inhibitor of gut bacterial BSHs. From a rationally designed candidate library, we identified a lead compound bearing an alpha-fluoromethyl ketone warhead that modifies BSH at the catalytic cysteine residue. This inhibitor abolished BSH activity in conventional mouse feces. Mice gavaged with a single dose of this compound displayed decreased BSH activity and decreased deconjugated bile acid levels in feces. Our studies demonstrate the potential of a covalent BSH inhibitor to modulate bile acid composition in vivo.
		+
		+	Development of a covalent inhibitor of gut bacterial bile salt hydrolases.,Adhikari AA, Seegar TCM, Ficarro SB, McCurry MD, Ramachandran D, Yao L, Chaudhari SN, Ndousse-Fetter S, Banks AS, Marto JA, Blacklow SC, Devlin AS Nat Chem Biol. 2020 Mar;16(3):318-326. doi: 10.1038/s41589-020-0467-3. Epub 2020 , Feb 10. PMID:32042200<ref>PMID:32042200</ref>
		+
		+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
		+	</div>
		+	<div class="pdbe-citations 6uh4" style="background-color:#fffaf0;"></div>
		+	== References ==
		+	<references/>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
		+	[[Category: Bacillus thetaiotaomicron distaso 1912]]
	[[Category: Choloylglycine hydrolase]]		[[Category: Choloylglycine hydrolase]]
	[[Category: Large Structures]]		[[Category: Large Structures]]

OCA at 06:42, 19 February 2020

OCA — Wed, 19 Feb 2020 06:42:45 GMT

←Older revision		Revision as of 06:42, 19 February 2020
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-	'''Unreleased structure'''

-	~~The entry~~ 6uh4 is ~~ON HOLD until Paper Publication~~	+	==B. theta Bile Salt Hydrolase with covalent inhibitor==
-		+	<StructureSection load='6uh4' size='340' side='right'caption='[[6uh4]], [[Resolution\|resolution]] 3.51Å' scene=''>
-	~~Authors~~:	+	== Structural highlights ==
-		+	<table><tr><td colspan='2'>[[6uh4]] is a 4 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6UH4 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6UH4 FirstGlance]. <br>
-	~~Description~~:	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=QC7:(5R,6R)-6-[(1S,2R,4aS,4bS,7R,8aS,10R,10aS)-7,10-dihydroxy-1,2,4b-trimethyltetradecahydrophenanthren-2-yl]-5-methylheptan-2-one'>QC7</scene></td></tr>
-	[[Category: ~~Unreleased~~ Structures]]	+	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[6ufy\|6ufy]]</td></tr>
		+	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Choloylglycine_hydrolase Choloylglycine hydrolase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.5.1.24 3.5.1.24] </span></td></tr>
		+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6uh4 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6uh4 OCA], [http://pdbe.org/6uh4 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6uh4 RCSB], [http://www.ebi.ac.uk/pdbsum/6uh4 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6uh4 ProSAT]</span></td></tr>
		+	</table>
		+	__TOC__
		+	</StructureSection>
		+	[[Category: Choloylglycine hydrolase]]
		+	[[Category: Large Structures]]
		+	[[Category: Seegar, T C.M]]
		+	[[Category: Bile salt hydrolase b. theta]]
		+	[[Category: Hydrolase-hydrolase inhibitor complex]]

OCA at 13:42, 11 December 2019

OCA — Wed, 11 Dec 2019 13:42:38 GMT

←Older revision		Revision as of 13:42, 11 December 2019
Line 1:		Line 1:
	'''Unreleased structure'''		'''Unreleased structure'''

-	The entry 6uh4 is ON HOLD	+	The entry 6uh4 is ON HOLD until Paper Publication

	Authors:		Authors:

OCA at 05:09, 23 October 2019

OCA — Wed, 23 Oct 2019 05:09:06 GMT

←Older revision		Revision as of 05:09, 23 October 2019
Line 1:		Line 1:
	'''Unreleased structure'''		'''Unreleased structure'''

-	The entry 6uh4 is ON HOLD ~~until sometime in the future~~	+	The entry 6uh4 is ON HOLD

	Authors:		Authors:

OCA at 03:56, 10 October 2019

OCA — Thu, 10 Oct 2019 03:56:50 GMT

←Older revision		Revision as of 03:56, 10 October 2019
Line 1:		Line 1:
	'''Unreleased structure'''		'''Unreleased structure'''

-	The entry 6uh4 is ON HOLD	+	The entry 6uh4 is ON HOLD until sometime in the future

	Authors:		Authors:

OCA: Protected "6uh4" [edit=sysop:move=sysop]

OCA — Wed, 02 Oct 2019 08:50:53 GMT

Protected "6uh4" [edit=sysop:move=sysop]

←Older revision

Revision as of 08:50, 2 October 2019

OCA: New page: '''Unreleased structure''' The entry 6uh4 is ON HOLD Authors: Description: Category: Unreleased Structures

OCA — Wed, 02 Oct 2019 08:50:51 GMT

New page: '''Unreleased structure''' The entry 6uh4 is ON HOLD Authors: Description: Category: Unreleased Structures

New page

'''Unreleased structure'''

The entry 6uh4 is ON HOLD

Authors:

Description:
[[Category: Unreleased Structures]]