6uhn - Revision history

OCA at 07:51, 11 October 2023

OCA — Wed, 11 Oct 2023 07:51:32 GMT

←Older revision		Revision as of 07:51, 11 October 2023
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	<StructureSection load='6uhn' size='340' side='right'caption='[[6uhn]], [[Resolution\|resolution]] 1.92Å' scene=''>		<StructureSection load='6uhn' size='340' side='right'caption='[[6uhn]], [[Resolution\|resolution]] 1.92Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[6uhn]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/~~Aeqvi Aeqvi~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6UHN OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=6UHN FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[6uhn]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Aequorea_victoria Aequorea victoria]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6UHN OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=6UHN FirstGlance]. <br>
-	</td></tr><tr id='~~ligand~~'><td class="sblockLbl"><b>[[~~Ligand~~\|~~Ligands~~:]]</b></td><td class="sblockDat" id="~~ligandDat~~">~~<scene name='pdbligand=UNL:UNKNOWN+LIGAND'>UNL</scene>~~</td></tr>	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 1.92Å</td></tr>
-	<tr id='~~NonStdRes~~'><td class="sblockLbl"><b>[[~~Non-Standard_Residue~~\|~~NonStd Res~~:]]</b></td><td class="sblockDat"><scene name='pdbligand=CRO:{2-[(1R,2R)-1-AMINO-2-HYDROXYPROPYL]-4-(4-HYDROXYBENZYLIDENE)-5-OXO-4,5-DIHYDRO-1H-IMIDAZOL-1-YL}ACETIC+ACID'>CRO</scene></td></tr>	+	<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CRO:{2-[(1R,2R)-1-AMINO-2-HYDROXYPROPYL]-4-(4-HYDROXYBENZYLIDENE)-5-OXO-4,5-DIHYDRO-1H-IMIDAZOL-1-YL}ACETIC+ACID'>CRO</scene>, <scene name='pdbligand=UNL:UNKNOWN+LIGAND'>UNL</scene></td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=6uhn FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6uhn OCA], [https://pdbe.org/6uhn PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=6uhn RCSB], [https://www.ebi.ac.uk/pdbsum/6uhn PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=6uhn ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=6uhn FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6uhn OCA], [https://pdbe.org/6uhn PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=6uhn RCSB], [https://www.ebi.ac.uk/pdbsum/6uhn PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=6uhn ProSAT]</span></td></tr>
	</table>		</table>
		+	== Function ==
		+	[https://www.uniprot.org/uniprot/GFP_AEQVI GFP_AEQVI] Energy-transfer acceptor. Its role is to transduce the blue chemiluminescence of the protein aequorin into green fluorescent light by energy transfer. Fluoresces in vivo upon receiving energy from the Ca(2+)-activated photoprotein aequorin.
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
	== Publication Abstract from PubMed ==		== Publication Abstract from PubMed ==
Line 17:		Line 19:
	</div>		</div>
	<div class="pdbe-citations 6uhn" style="background-color:#fffaf0;"></div>		<div class="pdbe-citations 6uhn" style="background-color:#fffaf0;"></div>
		+
		+	==See Also==
		+	*[[Green Fluorescent Protein 3D structures\|Green Fluorescent Protein 3D structures]]
	== References ==		== References ==
	<references/>		<references/>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: ~~Aeqvi~~]]	+	[[Category: Aequorea victoria]]
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: Figg~~, C A~~]]	+	[[Category: Figg CA]]
-	[[Category: Focia~~, P J~~]]	+	[[Category: Focia PJ]]
-	[[Category: Hayes~~, O G~~]]	+	[[Category: Hayes OG]]
-	[[Category: McMillan~~, J R~~]]	+	[[Category: McMillan JR]]
-	[[Category: Mirkin~~, C A~~]]	+	[[Category: Mirkin CA]]
-	[[Category: Winegar~~, P W]]~~	+	[[Category: Winegar PW]]
-	~~[[Category: Beta-barrel]]~~	+
-	~~[[Category: Dna]]~~	+
-	~~[[Category: Fluorescent protein]]~~	+
-	~~[[Category: Green fluorescent protein]]~~	+
-	~~[[Category: Protein-dna conjugate~~]]	+

OCA at 06:49, 24 March 2021

OCA — Wed, 24 Mar 2021 06:49:29 GMT

←Older revision		Revision as of 06:49, 24 March 2021
Line 3:		Line 3:
	<StructureSection load='6uhn' size='340' side='right'caption='[[6uhn]], [[Resolution\|resolution]] 1.92Å' scene=''>		<StructureSection load='6uhn' size='340' side='right'caption='[[6uhn]], [[Resolution\|resolution]] 1.92Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[6uhn]] is a 2 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6UHN OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=6UHN FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[6uhn]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Aeqvi Aeqvi]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6UHN OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=6UHN FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=UNL:UNKNOWN+LIGAND'>UNL</scene></td></tr>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=UNL:UNKNOWN+LIGAND'>UNL</scene></td></tr>
	<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=CRO:{2-[(1R,2R)-1-AMINO-2-HYDROXYPROPYL]-4-(4-HYDROXYBENZYLIDENE)-5-OXO-4,5-DIHYDRO-1H-IMIDAZOL-1-YL}ACETIC+ACID'>CRO</scene></td></tr>		<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=CRO:{2-[(1R,2R)-1-AMINO-2-HYDROXYPROPYL]-4-(4-HYDROXYBENZYLIDENE)-5-OXO-4,5-DIHYDRO-1H-IMIDAZOL-1-YL}ACETIC+ACID'>CRO</scene></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=6uhn FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6uhn OCA], [~~http~~://pdbe.org/6uhn PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=6uhn RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/6uhn PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=6uhn ProSAT]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=6uhn FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6uhn OCA], [https://pdbe.org/6uhn PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=6uhn RCSB], [https://www.ebi.ac.uk/pdbsum/6uhn PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=6uhn ProSAT]</span></td></tr>
	</table>		</table>
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	Designed DNA-DNA interactions are investigated for their ability to modulate protein packing within single crystals of mutant green fluorescent proteins (mGFPs) functionalized with a single DNA strand (mGFP-DNA). We probe the effects of DNA sequence, length, and protein-attachment position on the formation and protein packing of mGFP-DNA crystals. Notably, when complementary mGFP-DNA conjugates are introduced to one another, crystals form with nearly identical packing parameters, regardless of sequence if the number of bases is equivalent. DNA complementarity is essential, because experiments with non-complementary sequences produce crystals with different protein arrangements. Importantly, the DNA length and its position of attachment on the protein markedly influence the formation of and protein packing within single crystals. This work shows how designed DNA interactions can be used to influence the growth and packing in X-ray diffraction quality protein single crystals and is thus an important step forward in protein crystal engineering.
		+
		+	DNA-Directed Protein Packing within Single Crystals.,Winegar PH, Hayes OG, McMillan JR, Figg CA, Focia PJ, Mirkin CA Chem. 2020 Apr 9;6(4):1007-1017. doi: 10.1016/j.chempr.2020.03.002. Epub 2020 Mar, 23. PMID:33709040<ref>PMID:33709040</ref>
		+
		+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
		+	</div>
		+	<div class="pdbe-citations 6uhn" style="background-color:#fffaf0;"></div>
		+	== References ==
		+	<references/>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
		+	[[Category: Aeqvi]]
	[[Category: Large Structures]]		[[Category: Large Structures]]
	[[Category: Figg, C A]]		[[Category: Figg, C A]]

OCA at 09:57, 18 March 2020

OCA — Wed, 18 Mar 2020 09:57:30 GMT

←Older revision		Revision as of 09:57, 18 March 2020
Line 1:		Line 1:
-	'''Unreleased structure'''

-	~~The entry~~ 6uhn ~~is ON HOLD until Paper Publication~~	+	==Crystal Structure of C148 mGFP-cDNA-1==
-		+	<StructureSection load='6uhn' size='340' side='right'caption='[[6uhn]], [[Resolution\|resolution]] 1.92Å' scene=''>
-	~~Authors~~:	+	== Structural highlights ==
-		+	<table><tr><td colspan='2'>[[6uhn]] is a 2 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6UHN OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6UHN FirstGlance]. <br>
-	~~Description~~:	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=UNL:UNKNOWN+LIGAND'>UNL</scene></td></tr>
-	[[Category: ~~Unreleased~~ Structures]]	+	<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=CRO:{2-[(1R,2R)-1-AMINO-2-HYDROXYPROPYL]-4-(4-HYDROXYBENZYLIDENE)-5-OXO-4,5-DIHYDRO-1H-IMIDAZOL-1-YL}ACETIC+ACID'>CRO</scene></td></tr>
		+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6uhn FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6uhn OCA], [http://pdbe.org/6uhn PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6uhn RCSB], [http://www.ebi.ac.uk/pdbsum/6uhn PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6uhn ProSAT]</span></td></tr>
		+	</table>
		+	__TOC__
		+	</StructureSection>
		+	[[Category: Large Structures]]
		+	[[Category: Figg, C A]]
		+	[[Category: Focia, P J]]
		+	[[Category: Hayes, O G]]
		+	[[Category: McMillan, J R]]
		+	[[Category: Mirkin, C A]]
		+	[[Category: Winegar, P W]]
		+	[[Category: Beta-barrel]]
		+	[[Category: Dna]]
		+	[[Category: Fluorescent protein]]
		+	[[Category: Green fluorescent protein]]
		+	[[Category: Protein-dna conjugate]]

OCA at 07:35, 30 October 2019

OCA — Wed, 30 Oct 2019 07:35:49 GMT

←Older revision		Revision as of 07:35, 30 October 2019
Line 1:		Line 1:
	'''Unreleased structure'''		'''Unreleased structure'''

-	The entry 6uhn is ON HOLD	+	The entry 6uhn is ON HOLD until Paper Publication

	Authors:		Authors:

OCA: Protected "6uhn" [edit=sysop:move=sysop]

OCA — Thu, 10 Oct 2019 03:57:41 GMT

Protected "6uhn" [edit=sysop:move=sysop]

←Older revision

Revision as of 03:57, 10 October 2019

OCA: New page: '''Unreleased structure''' The entry 6uhn is ON HOLD Authors: Description: Category: Unreleased Structures

OCA — Thu, 10 Oct 2019 03:57:40 GMT

New page: '''Unreleased structure''' The entry 6uhn is ON HOLD Authors: Description: Category: Unreleased Structures

New page

'''Unreleased structure'''

The entry 6uhn is ON HOLD

Authors:

Description:
[[Category: Unreleased Structures]]