6uqg - Revision history

OCA at 09:29, 20 March 2024

OCA — Wed, 20 Mar 2024 09:29:59 GMT

←Older revision		Revision as of 09:29, 20 March 2024
Line 3:		Line 3:
	<SX load='6uqg' size='340' side='right' viewer='molstar' caption='[[6uqg]], [[Resolution\|resolution]] 3.54Å' scene=''>		<SX load='6uqg' size='340' side='right' viewer='molstar' caption='[[6uqg]], [[Resolution\|resolution]] 3.54Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[6uqg]] is a 4 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/~~Human Human~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6UQG OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://proteopedia.org/fgij/fg.htm?mol=6UQG FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[6uqg]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6UQG OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=6UQG FirstGlance]. <br>
-	</td></tr><tr id='~~ligand~~'><td class="sblockLbl"><b>[[~~Ligand~~\|~~Ligands~~:]]</b></td><td class="sblockDat" id="~~ligandDat~~">~~<scene name='pdbligand=CMP:ADENOSINE-~~3~~,5-CYCLIC-MONOPHOSPHATE'>CMP</scene>~~</td></tr>	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">Electron Microscopy, [[Resolution\|Resolution]] 3.54Å</td></tr>
-	<tr id='~~gene~~'><td class="sblockLbl"><b>[[~~Gene~~\|~~Gene~~:]]</b></td><td class="sblockDat">~~HCN1, BCNG1 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode~~=~~Info&srchmode~~=5~~&id=9606 HUMAN])~~</td></tr>	+	<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CMP:ADENOSINE-3,5-CYCLIC-MONOPHOSPHATE'>CMP</scene></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://proteopedia.org/fgij/fg.htm?mol=6uqg FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6uqg OCA], [~~http~~://pdbe.org/6uqg PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=6uqg RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/6uqg PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=6uqg ProSAT]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=6uqg FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6uqg OCA], [https://pdbe.org/6uqg PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=6uqg RCSB], [https://www.ebi.ac.uk/pdbsum/6uqg PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=6uqg ProSAT]</span></td></tr>
	</table>		</table>
	== Disease ==		== Disease ==
-	[~~[http~~://www.uniprot.org/uniprot/HCN1_HUMAN HCN1_HUMAN]] Early infantile epileptic encephalopathy. The disease is caused by mutations affecting the gene represented in this entry.	+	[https://www.uniprot.org/uniprot/HCN1_HUMAN HCN1_HUMAN] Early infantile epileptic encephalopathy. The disease is caused by mutations affecting the gene represented in this entry.
	== Function ==		== Function ==
-	[~~[http~~://www.uniprot.org/uniprot/HCN1_HUMAN HCN1_HUMAN]] Hyperpolarization-activated ion channel exhibiting weak selectivity for potassium over sodium ions. Contributes to the native pacemaker currents in heart (If) and in neurons (Ih). May mediate responses to sour stimuli.<ref>PMID:15351778</ref>	+	[https://www.uniprot.org/uniprot/HCN1_HUMAN HCN1_HUMAN] Hyperpolarization-activated ion channel exhibiting weak selectivity for potassium over sodium ions. Contributes to the native pacemaker currents in heart (If) and in neurons (Ih). May mediate responses to sour stimuli.<ref>PMID:15351778</ref>
-	~~<div style="background-color:#fffaf0;">~~	+
-	~~== Publication Abstract from PubMed ==~~	+
-	The hyperpolarization-activated cyclic nucleotide-gated (HCN) channel is a voltage-gated cation channel that mediates neuronal and cardiac pacemaker activity. The HCN channel exhibits reversed voltage dependence, meaning it closes with depolarization and opens with hyperpolarization. Different from Na(+), Ca(2+), and Kv1-Kv7 channels, the HCN channel does not have domain-swapped voltage sensors. We introduced a reversible, metal-mediated cross bridge into the voltage sensors to create the chemical equivalent of a hyperpolarized conformation and determined the structure using cryoelectron microscopy (cryo-EM). Unlike the depolarized HCN channel, the S4 helix is displaced toward the cytoplasm by two helical turns. Near the cytoplasm, the S4 helix breaks into two helices, one running parallel to the membrane surface, analogous to the S4-S5 linker of domain-swapped voltage-gated channels. These findings suggest a basis for allosteric communication between voltage sensors and the gate in this kind of channel. They also imply that voltage sensor movements are not the same in all voltage-gated channels.	+

-	Voltage Sensor Movements during Hyperpolarization in the HCN Channel.,Lee CH, MacKinnon R Cell. 2019 Dec 12;179(7):1582-1589.e7. doi: 10.1016/j.cell.2019.11.006. Epub 2019, Nov 28. PMID:31787376<ref>PMID:31787376</ref>	+	==See Also==
-		+	*[[Ion channels 3D structures\|Ion channels 3D structures]]
-	~~From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>~~	+
-	~~</div>~~	+
-	~~<div class~~=~~"pdbe-citations 6uqg" style~~=~~"background-color:#fffaf0;"></div>~~	+
	== References ==		== References ==
	<references/>		<references/>
	__TOC__		__TOC__
	</SX>		</SX>
-	[[Category: ~~Human~~]]	+	[[Category: Homo sapiens]]
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: Lee, C H]]	+	[[Category: Lee C-H]]
-	[[Category: MacKinnon, R]]	+	[[Category: MacKinnon R]]
-	~~[[Category: Ion channel]]~~	+
-	~~[[Category: Membrane protein~~]]	+

OCA at 06:54, 11 April 2020

OCA — Sat, 11 Apr 2020 06:54:11 GMT

←Older revision		Revision as of 06:54, 11 April 2020
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	<SX load='6uqg' size='340' side='right' viewer='molstar' caption='[[6uqg]], [[Resolution\|resolution]] 3.54Å' scene=''>		<SX load='6uqg' size='340' side='right' viewer='molstar' caption='[[6uqg]], [[Resolution\|resolution]] 3.54Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[6uqg]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Human Human]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6UQG OCA]. For a <b>guided tour on the structure components</b> use [http://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=6UQG FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[6uqg]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Human Human]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6UQG OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=6UQG FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CMP:ADENOSINE-3,5-CYCLIC-MONOPHOSPHATE'>CMP</scene></td></tr>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CMP:ADENOSINE-3,5-CYCLIC-MONOPHOSPHATE'>CMP</scene></td></tr>
	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">HCN1, BCNG1 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=9606 HUMAN])</td></tr>		<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">HCN1, BCNG1 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=9606 HUMAN])</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=6uqg FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6uqg OCA], [http://pdbe.org/6uqg PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6uqg RCSB], [http://www.ebi.ac.uk/pdbsum/6uqg PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6uqg ProSAT]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=6uqg FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6uqg OCA], [http://pdbe.org/6uqg PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6uqg RCSB], [http://www.ebi.ac.uk/pdbsum/6uqg PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6uqg ProSAT]</span></td></tr>
	</table>		</table>
	== Disease ==		== Disease ==

OCA at 01:14, 7 March 2020

OCA — Sat, 07 Mar 2020 01:14:18 GMT

←Older revision		Revision as of 01:14, 7 March 2020
Line 1:		Line 1:

	==Human HCN1 channel Y289D mutant==		==Human HCN1 channel Y289D mutant==
-	<~~StructureSection~~ load='6uqg' size='340' side='right'caption='[[6uqg]], [[Resolution\|resolution]] 3.54Å' scene=''>	+	<SX load='6uqg' size='340' side='right' viewer='molstar' caption='[[6uqg]], [[Resolution\|resolution]] 3.54Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[6uqg]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Human Human]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6UQG OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6UQG FirstGlance]. <br>		<table><tr><td colspan='2'>[[6uqg]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Human Human]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6UQG OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6UQG FirstGlance]. <br>
Line 24:		Line 24:
	<references/>		<references/>
	__TOC__		__TOC__
-	</~~StructureSection~~>	+	</SX>
	[[Category: Human]]		[[Category: Human]]
	[[Category: Large Structures]]		[[Category: Large Structures]]

OCA at 13:26, 18 December 2019

OCA — Wed, 18 Dec 2019 13:26:10 GMT

←Older revision		Revision as of 13:26, 18 December 2019
Line 3:		Line 3:
	<StructureSection load='6uqg' size='340' side='right'caption='[[6uqg]], [[Resolution\|resolution]] 3.54Å' scene=''>		<StructureSection load='6uqg' size='340' side='right'caption='[[6uqg]], [[Resolution\|resolution]] 3.54Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[6uqg]] is a 4 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6UQG OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6UQG FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[6uqg]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Human Human]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6UQG OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6UQG FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CMP:ADENOSINE-3,5-CYCLIC-MONOPHOSPHATE'>CMP</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CMP:ADENOSINE-3,5-CYCLIC-MONOPHOSPHATE'>CMP</scene></td></tr>
		+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">HCN1, BCNG1 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=9606 HUMAN])</td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6uqg FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6uqg OCA], [http://pdbe.org/6uqg PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6uqg RCSB], [http://www.ebi.ac.uk/pdbsum/6uqg PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6uqg ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6uqg FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6uqg OCA], [http://pdbe.org/6uqg PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6uqg RCSB], [http://www.ebi.ac.uk/pdbsum/6uqg PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6uqg ProSAT]</span></td></tr>
	</table>		</table>
Line 11:		Line 12:
	== Function ==		== Function ==
	[[http://www.uniprot.org/uniprot/HCN1_HUMAN HCN1_HUMAN]] Hyperpolarization-activated ion channel exhibiting weak selectivity for potassium over sodium ions. Contributes to the native pacemaker currents in heart (If) and in neurons (Ih). May mediate responses to sour stimuli.<ref>PMID:15351778</ref>		[[http://www.uniprot.org/uniprot/HCN1_HUMAN HCN1_HUMAN]] Hyperpolarization-activated ion channel exhibiting weak selectivity for potassium over sodium ions. Contributes to the native pacemaker currents in heart (If) and in neurons (Ih). May mediate responses to sour stimuli.<ref>PMID:15351778</ref>
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	The hyperpolarization-activated cyclic nucleotide-gated (HCN) channel is a voltage-gated cation channel that mediates neuronal and cardiac pacemaker activity. The HCN channel exhibits reversed voltage dependence, meaning it closes with depolarization and opens with hyperpolarization. Different from Na(+), Ca(2+), and Kv1-Kv7 channels, the HCN channel does not have domain-swapped voltage sensors. We introduced a reversible, metal-mediated cross bridge into the voltage sensors to create the chemical equivalent of a hyperpolarized conformation and determined the structure using cryoelectron microscopy (cryo-EM). Unlike the depolarized HCN channel, the S4 helix is displaced toward the cytoplasm by two helical turns. Near the cytoplasm, the S4 helix breaks into two helices, one running parallel to the membrane surface, analogous to the S4-S5 linker of domain-swapped voltage-gated channels. These findings suggest a basis for allosteric communication between voltage sensors and the gate in this kind of channel. They also imply that voltage sensor movements are not the same in all voltage-gated channels.
		+
		+	Voltage Sensor Movements during Hyperpolarization in the HCN Channel.,Lee CH, MacKinnon R Cell. 2019 Dec 12;179(7):1582-1589.e7. doi: 10.1016/j.cell.2019.11.006. Epub 2019, Nov 28. PMID:31787376<ref>PMID:31787376</ref>
		+
		+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
		+	</div>
		+	<div class="pdbe-citations 6uqg" style="background-color:#fffaf0;"></div>
	== References ==		== References ==
	<references/>		<references/>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
		+	[[Category: Human]]
	[[Category: Large Structures]]		[[Category: Large Structures]]
	[[Category: Lee, C H]]		[[Category: Lee, C H]]

OCA at 15:25, 11 December 2019

OCA — Wed, 11 Dec 2019 15:25:28 GMT

←Older revision		Revision as of 15:25, 11 December 2019
Line 1:		Line 1:
-	'''Unreleased structure'''

-	~~The entry~~ 6uqg is ~~ON HOLD~~	+	==Human HCN1 channel Y289D mutant==
-		+	<StructureSection load='6uqg' size='340' side='right'caption='[[6uqg]], [[Resolution\|resolution]] 3.54Å' scene=''>
-	~~Authors~~:	+	== Structural highlights ==
-		+	<table><tr><td colspan='2'>[[6uqg]] is a 4 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6UQG OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6UQG FirstGlance]. <br>
-	~~Description~~:	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CMP:ADENOSINE-3,5-CYCLIC-MONOPHOSPHATE'>CMP</scene></td></tr>
-	[[Category: ~~Unreleased~~ Structures]]	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6uqg FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6uqg OCA], [http://pdbe.org/6uqg PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6uqg RCSB], [http://www.ebi.ac.uk/pdbsum/6uqg PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6uqg ProSAT]</span></td></tr>
		+	</table>
		+	== Disease ==
		+	[[http://www.uniprot.org/uniprot/HCN1_HUMAN HCN1_HUMAN]] Early infantile epileptic encephalopathy. The disease is caused by mutations affecting the gene represented in this entry.
		+	== Function ==
		+	[[http://www.uniprot.org/uniprot/HCN1_HUMAN HCN1_HUMAN]] Hyperpolarization-activated ion channel exhibiting weak selectivity for potassium over sodium ions. Contributes to the native pacemaker currents in heart (If) and in neurons (Ih). May mediate responses to sour stimuli.<ref>PMID:15351778</ref>
		+	== References ==
		+	<references/>
		+	__TOC__
		+	</StructureSection>
		+	[[Category: Large Structures]]
		+	[[Category: Lee, C H]]
		+	[[Category: MacKinnon, R]]
		+	[[Category: Ion channel]]
		+	[[Category: Membrane protein]]

OCA: Protected "6uqg" [edit=sysop:move=sysop]

OCA — Wed, 30 Oct 2019 07:40:37 GMT

Protected "6uqg" [edit=sysop:move=sysop]

←Older revision

Revision as of 07:40, 30 October 2019

OCA: New page: '''Unreleased structure''' The entry 6uqg is ON HOLD Authors: Description: Category: Unreleased Structures

OCA — Wed, 30 Oct 2019 07:40:35 GMT

New page: '''Unreleased structure''' The entry 6uqg is ON HOLD Authors: Description: Category: Unreleased Structures

New page

'''Unreleased structure'''

The entry 6uqg is ON HOLD

Authors:

Description:
[[Category: Unreleased Structures]]