6vgd - Revision history

OCA at 08:12, 11 October 2023

OCA — Wed, 11 Oct 2023 08:12:05 GMT

←Older revision		Revision as of 08:12, 11 October 2023
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-	====	+	==Crystal structure of the DNA binding domain (DBD) of human FLI1 and the complex of the DBD of human Runx2 with core binding factor beta (Cbfb), in complex with 16mer DNA CAGAGGATGTGGCTTC==
-	<StructureSection load='6vgd' size='340' side='right'caption='[[6vgd]]' scene=''>	+	<StructureSection load='6vgd' size='340' side='right'caption='[[6vgd]], [[Resolution\|resolution]] 4.20Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id= OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol= FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[6vgd]] is a 5 chain structure with sequence from [https://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6VGD OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=6VGD FirstGlance]. <br>
-	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=6vgd FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6vgd OCA], [https://pdbe.org/6vgd PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=6vgd RCSB], [https://www.ebi.ac.uk/pdbsum/6vgd PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=6vgd ProSAT]</span></td></tr>	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 4.2Å</td></tr>
		+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=6vgd FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6vgd OCA], [https://pdbe.org/6vgd PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=6vgd RCSB], [https://www.ebi.ac.uk/pdbsum/6vgd PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=6vgd ProSAT]</span></td></tr>
	</table>		</table>
		+	== Disease ==
		+	[https://www.uniprot.org/uniprot/FLI1_HUMAN FLI1_HUMAN] Defects in FLI1 are a cause of Ewing sarcoma (ES) [MIM:[https://omim.org/entry/612219 612219]. A highly malignant, metastatic, primitive small round cell tumor of bone and soft tissue that affects children and adolescents. It belongs to the Ewing sarcoma family of tumors, a group of morphologically heterogeneous neoplasms that share the same cytogenetic features. They are considered neural tumors derived from cells of the neural crest. Ewing sarcoma represents the less differentiated form of the tumors. Note=A chromosomal aberration involving FLI1 is found in patients with Erwing sarcoma. Translocation t(11;22)(q24;q12) with EWSR1.
		+	== Function ==
		+	[https://www.uniprot.org/uniprot/FLI1_HUMAN FLI1_HUMAN] Sequence-specific transcriptional activator. Recognizes the DNA sequence 5'-C[CA]GGAAGT-3'.
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	ETS family transcription factors of ERG and FLI1 play a key role in oncogenesis of prostate cancer and Ewing sarcoma by binding regulatory DNA sites and interfering with function of other factors. Mithramycin (MTM) is an anti-cancer, DNA binding natural product that functions as a potent antagonist of ERG and FLI1 by an unknown mechanism. We present a series of crystal structures of the DNA binding domain (DBD) of ERG/FLI1 culminating in a structure of a high-order complex of the ERG/FLI1 DBD, transcription factor Runx2, core-binding factor beta (Cbfbeta), and MTM on a DNA enhancer site, along with supporting DNA binding studies using MTM and its analogues. Taken together, these data provide insight into allosteric mechanisms underlying ERG and FLI1 transactions and their disruption by MTM analogues.
		+
		+	Allosteric interference in oncogenic FLI1 and ERG transactions by mithramycins.,Hou C, Mandal A, Rohr J, Tsodikov OV Structure. 2021 May 6;29(5):404-412.e4. doi: 10.1016/j.str.2020.11.012. Epub 2020 , Dec 3. PMID:33275876<ref>PMID:33275876</ref>
		+
		+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
		+	</div>
		+	<div class="pdbe-citations 6vgd" style="background-color:#fffaf0;"></div>
		+
		+	==See Also==
		+	*[[Core-binding factor\|Core-binding factor]]
		+	== References ==
		+	<references/>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
		+	[[Category: Homo sapiens]]
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: ~~Z-disk~~]]	+	[[Category: Hou C]]
		+	[[Category: Tsodikov OV]]

OCA at 10:14, 19 May 2021

OCA — Wed, 19 May 2021 10:14:50 GMT

←Older revision		Revision as of 10:14, 19 May 2021
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	<StructureSection load='6vgd' size='340' side='right'caption='[[6vgd]]' scene=''>		<StructureSection load='6vgd' size='340' side='right'caption='[[6vgd]]' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id= OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://proteopedia.org/fgij/fg.htm?mol= FirstGlance]. <br>	+	<table><tr><td colspan='2'>Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id= OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol= FirstGlance]. <br>
-	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://proteopedia.org/fgij/fg.htm?mol=6vgd FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6vgd OCA], [~~http~~://pdbe.org/6vgd PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=6vgd RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/6vgd PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=6vgd ProSAT]</span></td></tr>	+	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=6vgd FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6vgd OCA], [https://pdbe.org/6vgd PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=6vgd RCSB], [https://www.ebi.ac.uk/pdbsum/6vgd PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=6vgd ProSAT]</span></td></tr>
	</table>		</table>
	__TOC__		__TOC__

OCA at 06:54, 25 November 2020

OCA — Wed, 25 Nov 2020 06:54:14 GMT

←Older revision		Revision as of 06:54, 25 November 2020
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-	'''Unreleased structure'''

-	~~The entry~~ 6vgd ~~is ON HOLD until Paper Publication~~	+	====
-		+	<StructureSection load='6vgd' size='340' side='right'caption='[[6vgd]]' scene=''>
-	~~Authors~~:	+	== Structural highlights ==
-		+	<table><tr><td colspan='2'>Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id= OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol= FirstGlance]. <br>
-	~~Description~~:	+	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=6vgd FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6vgd OCA], [http://pdbe.org/6vgd PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6vgd RCSB], [http://www.ebi.ac.uk/pdbsum/6vgd PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6vgd ProSAT]</span></td></tr>
-	[[Category: ~~Unreleased~~ Structures]]	+	</table>
		+	__TOC__
		+	</StructureSection>
		+	[[Category: Large Structures]]
		+	[[Category: Z-disk]]

OCA: Protected "6vgd" [edit=sysop:move=sysop]

OCA — Wed, 22 Jan 2020 14:24:38 GMT

Protected "6vgd" [edit=sysop:move=sysop]

←Older revision

Revision as of 14:24, 22 January 2020

OCA: New page: '''Unreleased structure''' The entry 6vgd is ON HOLD until Paper Publication Authors: Description: Category: Unreleased Structures

OCA — Wed, 22 Jan 2020 14:24:36 GMT

New page: '''Unreleased structure''' The entry 6vgd is ON HOLD until Paper Publication Authors: Description: Category: Unreleased Structures

New page

'''Unreleased structure'''

The entry 6vgd is ON HOLD until Paper Publication

Authors:

Description:
[[Category: Unreleased Structures]]