6w4l - Revision history

OCA at 14:16, 18 October 2023

OCA — Wed, 18 Oct 2023 14:16:43 GMT

←Older revision		Revision as of 14:16, 18 October 2023
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	<StructureSection load='6w4l' size='340' side='right'caption='[[6w4l]], [[Resolution\|resolution]] 1.31Å' scene=''>		<StructureSection load='6w4l' size='340' side='right'caption='[[6w4l]], [[Resolution\|resolution]] 1.31Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[6w4l]] is a 1 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/~~African_clawed_frog African clawed frog~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6W4L OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://proteopedia.org/fgij/fg.htm?mol=6W4L FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[6w4l]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Xenopus_laevis Xenopus laevis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6W4L OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=6W4L FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=PPV:PYROPHOSPHATE'>PPV</scene></td></tr>	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 1.31Å</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://proteopedia.org/fgij/fg.htm?mol=6w4l FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6w4l OCA], [~~http~~://pdbe.org/6w4l PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=6w4l RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/6w4l PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=6w4l ProSAT]</span></td></tr>	+	<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=PPV:PYROPHOSPHATE'>PPV</scene></td></tr>
		+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=6w4l FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6w4l OCA], [https://pdbe.org/6w4l PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=6w4l RCSB], [https://www.ebi.ac.uk/pdbsum/6w4l PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=6w4l ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
-	[~~[http~~://www.uniprot.org/uniprot/H2B11_XENLA H2B11_XENLA]] Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling.	+	[https://www.uniprot.org/uniprot/H2B11_XENLA H2B11_XENLA] Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling.[https://www.uniprot.org/uniprot/H2A1_XENLA H2A1_XENLA] Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling.
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
	== Publication Abstract from PubMed ==		== Publication Abstract from PubMed ==
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	</div>		</div>
	<div class="pdbe-citations 6w4l" style="background-color:#fffaf0;"></div>		<div class="pdbe-citations 6w4l" style="background-color:#fffaf0;"></div>
		+
		+	==See Also==
		+	*[[Histone 3D structures\|Histone 3D structures]]
	== References ==		== References ==
	<references/>		<references/>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: African clawed frog]]
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: ~~Almo, S C~~]]	+	[[Category: Xenopus laevis]]
-	[[Category: ~~Bonanno, J B~~]]	+	[[Category: Almo SC]]
-	[[Category: ~~Shechter, D~~]]	+	[[Category: Bonanno JB]]
-	[[Category: ~~Warren, C~~]]	+	[[Category: Shechter D]]
-	[[Category: ~~Chromatin]]~~	+	[[Category: Warren C]]
-	~~[[Category: Gene regulation]]~~	+
-	~~[[Category: Histone~~]]	+

OCA at 06:02, 13 May 2020

OCA — Wed, 13 May 2020 06:02:12 GMT

←Older revision		Revision as of 06:02, 13 May 2020
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	==The crystal structure of a single chain H2B-H2A histone chimera from Xenopus laevis==		==The crystal structure of a single chain H2B-H2A histone chimera from Xenopus laevis==
-	<StructureSection load='6w4l' size='340' side='right'caption='[[6w4l]]' scene=''>	+	<StructureSection load='6w4l' size='340' side='right'caption='[[6w4l]], [[Resolution\|resolution]] 1.31Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6W4L OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=6W4L FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[6w4l]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/African_clawed_frog African clawed frog]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6W4L OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=6W4L FirstGlance]. <br>
-	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=6w4l FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6w4l OCA], [http://pdbe.org/6w4l PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6w4l RCSB], [http://www.ebi.ac.uk/pdbsum/6w4l PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6w4l ProSAT]</span></td></tr>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=PPV:PYROPHOSPHATE'>PPV</scene></td></tr>
		+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=6w4l FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6w4l OCA], [http://pdbe.org/6w4l PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6w4l RCSB], [http://www.ebi.ac.uk/pdbsum/6w4l PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6w4l ProSAT]</span></td></tr>
	</table>		</table>
		+	== Function ==
		+	[[http://www.uniprot.org/uniprot/H2B11_XENLA H2B11_XENLA]] Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling.
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	Chromatin is the complex assembly of nucleic acids and proteins that makes up the physiological form of the eukaryotic genome. The nucleosome is the fundamental repeating unit of chromatin, and is composed of approximately 147 bp of DNA wrapped around a histone octamer formed by two copies of each core histone: H2A, H2B, H3 and H4. Prior to nucleosome assembly, and during histone eviction, histones are typically assembled into soluble H2A/H2B dimers and H3/H4 dimers and tetramers. A multitude of factors interact with soluble histone dimers and tetramers, including chaperones, importins, histone-modifying enzymes and chromatin-remodeling enzymes. It is still unclear how many of these proteins recognize soluble histones; therefore, there is a need for new structural tools to study non-nucleosomal histones. Here, a single-chain, tailless Xenopus H2A/H2B dimer was created by directly fusing the C-terminus of H2B to the N-terminus of H2A. It is shown that this construct (termed scH2BH2A) is readily expressed in bacteria and can be purified under non-denaturing conditions. A 1.31 A resolution crystal structure of scH2BH2A shows that it adopts a conformation that is nearly identical to that of nucleosomal H2A/H2B. This new tool is likely to facilitate future structural studies of many H2A/H2B-interacting proteins.
		+
		+	Structure of a single-chain H2A/H2B dimer.,Warren C, Bonanno JB, Almo SC, Shechter D Acta Crystallogr F Struct Biol Commun. 2020 May 1;76(Pt 5):194-198. doi:, 10.1107/S2053230X20004604. Epub 2020 Apr 28. PMID:32356520<ref>PMID:32356520</ref>
		+
		+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
		+	</div>
		+	<div class="pdbe-citations 6w4l" style="background-color:#fffaf0;"></div>
		+	== References ==
		+	<references/>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
		+	[[Category: African clawed frog]]
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: Almo SC]]	+	[[Category: Almo, S C]]
-	[[Category: Bonanno JB]]	+	[[Category: Bonanno, J B]]
-	[[Category: Shechter D]]	+	[[Category: Shechter, D]]
-	[[Category: Warren C]]	+	[[Category: Warren, C]]
		+	[[Category: Chromatin]]
		+	[[Category: Gene regulation]]
		+	[[Category: Histone]]

OCA at 06:07, 6 May 2020

OCA — Wed, 06 May 2020 06:07:42 GMT

←Older revision		Revision as of 06:07, 6 May 2020
Line 1:		Line 1:
-	'''Unreleased structure'''

-	The ~~entry~~ 6w4l is ~~ON HOLD~~	+	==The crystal structure of a single chain H2B-H2A histone chimera from Xenopus laevis==
-		+	<StructureSection load='6w4l' size='340' side='right'caption='[[6w4l]]' scene=''>
-	~~Authors~~:	+	== Structural highlights ==
-		+	<table><tr><td colspan='2'>Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6W4L OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=6W4L FirstGlance]. <br>
-	~~Description~~:	+	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=6w4l FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6w4l OCA], [http://pdbe.org/6w4l PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6w4l RCSB], [http://www.ebi.ac.uk/pdbsum/6w4l PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6w4l ProSAT]</span></td></tr>
-	[[Category: ~~Unreleased Structures~~]]	+	</table>
		+	__TOC__
		+	</StructureSection>
		+	[[Category: Large Structures]]
		+	[[Category: Almo SC]]
		+	[[Category: Bonanno JB]]
		+	[[Category: Shechter D]]
		+	[[Category: Warren C]]

OCA: Protected "6w4l" [edit=sysop:move=sysop]

OCA — Wed, 18 Mar 2020 08:34:44 GMT

Protected "6w4l" [edit=sysop:move=sysop]

←Older revision

Revision as of 08:34, 18 March 2020

OCA: New page: '''Unreleased structure''' The entry 6w4l is ON HOLD Authors: Description: Category: Unreleased Structures

OCA — Wed, 18 Mar 2020 08:34:42 GMT

New page: '''Unreleased structure''' The entry 6w4l is ON HOLD Authors: Description: Category: Unreleased Structures

New page

'''Unreleased structure'''

The entry 6w4l is ON HOLD

Authors:

Description:
[[Category: Unreleased Structures]]