6wde - Revision history

OCA at 14:43, 6 March 2024

OCA — Wed, 06 Mar 2024 14:43:19 GMT

←Older revision		Revision as of 14:43, 6 March 2024
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-	====	+	==Cryo-EM of elongating ribosome with EF-Tu*GTP elucidates tRNA proofreading (Cognate Structure V-B)==
-	<StructureSection load='6wde' size='340' side='right'caption='[[6wde]]' scene=''>	+	<StructureSection load='6wde' size='340' side='right'caption='[[6wde]], [[Resolution\|resolution]] 3.00Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id= OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://proteopedia.org/fgij/fg.htm?mol= FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[6wde]] is a 10 chain structure with sequence from [https://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6WDE OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=6WDE FirstGlance]. <br>
-	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://proteopedia.org/fgij/fg.htm?mol=6wde FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6wde OCA], [~~http~~://pdbe.org/6wde PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=6wde RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/6wde PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=6wde ProSAT]</span></td></tr>	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">Electron Microscopy, [[Resolution\|Resolution]] 3Å</td></tr>
		+	<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MET:METHIONINE'>MET</scene>, <scene name='pdbligand=PHE:PHENYLALANINE'>PHE</scene></td></tr>
		+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=6wde FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6wde OCA], [https://pdbe.org/6wde PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=6wde RCSB], [https://www.ebi.ac.uk/pdbsum/6wde PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=6wde ProSAT]</span></td></tr>
	</table>		</table>
		+	== Function ==
		+	[https://www.uniprot.org/uniprot/RL2_ECOLI RL2_ECOLI] One of the primary rRNA binding proteins. Located near the base of the L1 stalk, it is probably also mobile. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity; this is highly controversial.[HAMAP-Rule:MF_01320_B] In the E.coli 70S ribosome in the initiation state it has been modeled to make several contacts with the 16S rRNA (forming bridge B7b, PubMed:12809609); these contacts are broken in the model with bound EF-G.[HAMAP-Rule:MF_01320_B]
		+
		+	==See Also==
		+	*[[Ribosome 3D structures\|Ribosome 3D structures]]
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
		+	[[Category: Escherichia coli]]
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: ~~Z-disk~~]]	+	[[Category: Demo G]]
		+	[[Category: Korostelev AA]]
		+	[[Category: Loveland AB]]

OCA at 09:59, 9 September 2020

OCA — Wed, 09 Sep 2020 09:59:23 GMT

←Older revision		Revision as of 09:59, 9 September 2020
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-	'''Unreleased structure'''

-	~~The entry~~ 6wde ~~is ON HOLD until Paper Publication~~	+	====
-		+	<StructureSection load='6wde' size='340' side='right'caption='[[6wde]]' scene=''>
-	~~Authors~~:	+	== Structural highlights ==
-		+	<table><tr><td colspan='2'>Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id= OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol= FirstGlance]. <br>
-	~~Description~~:	+	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=6wde FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6wde OCA], [http://pdbe.org/6wde PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6wde RCSB], [http://www.ebi.ac.uk/pdbsum/6wde PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6wde ProSAT]</span></td></tr>
-	[[Category: ~~Unreleased~~ Structures]]	+	</table>
		+	__TOC__
		+	</StructureSection>
		+	[[Category: Large Structures]]
		+	[[Category: Z-disk]]

OCA at 04:39, 27 May 2020

OCA — Wed, 27 May 2020 04:39:58 GMT

←Older revision		Revision as of 04:39, 27 May 2020
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	'''Unreleased structure'''		'''Unreleased structure'''

-	The entry 6wde is ON HOLD	+	The entry 6wde is ON HOLD until Paper Publication

	Authors:		Authors:

OCA: Protected "6wde" [edit=sysop:move=sysop]

OCA — Wed, 08 Apr 2020 05:38:19 GMT

Protected "6wde" [edit=sysop:move=sysop]

←Older revision

Revision as of 05:38, 8 April 2020

OCA: New page: '''Unreleased structure''' The entry 6wde is ON HOLD Authors: Description: Category: Unreleased Structures

OCA — Wed, 08 Apr 2020 05:38:18 GMT

New page: '''Unreleased structure''' The entry 6wde is ON HOLD Authors: Description: Category: Unreleased Structures

New page

'''Unreleased structure'''

The entry 6wde is ON HOLD

Authors:

Description:
[[Category: Unreleased Structures]]