6wkw - Revision history

OCA at 14:44, 6 March 2024

OCA — Wed, 06 Mar 2024 14:44:55 GMT

←Older revision		Revision as of 14:44, 6 March 2024
Line 3:		Line 3:
	<StructureSection load='6wkw' size='340' side='right'caption='[[6wkw]], [[Resolution\|resolution]] 3.60Å' scene=''>		<StructureSection load='6wkw' size='340' side='right'caption='[[6wkw]], [[Resolution\|resolution]] 3.60Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[6wkw]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/~~Human Human~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6WKW OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=6WKW FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[6wkw]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6WKW OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=6WKW FirstGlance]. <br>
-	</td></tr><tr id='~~ligand~~'><td class="sblockLbl"><b>[[~~Ligand~~\|~~Ligands~~:]]</b></td><td class="sblockDat" id="~~ligandDat~~">~~<scene name='pdbligand=NAD:NICOTINAMIDE-ADENINE-DINUCLEOTIDE'>NAD</scene>~~</td></tr>	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">Electron Microscopy, [[Resolution\|Resolution]] 3.6Å</td></tr>
-	<tr id='~~gene~~'><td class="sblockLbl"><b>[[~~Gene~~\|~~Gene~~:]]</b></td><td class="sblockDat">~~CTBP2 ([https~~:/~~/www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=9606 HUMAN])~~</td></tr>	+	<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=NAD:NICOTINAMIDE-ADENINE-DINUCLEOTIDE'>NAD</scene></td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=6wkw FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6wkw OCA], [https://pdbe.org/6wkw PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=6wkw RCSB], [https://www.ebi.ac.uk/pdbsum/6wkw PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=6wkw ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=6wkw FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6wkw OCA], [https://pdbe.org/6wkw PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=6wkw RCSB], [https://www.ebi.ac.uk/pdbsum/6wkw PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=6wkw ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
-	[[https://www.uniprot.org/uniprot/CTBP2_HUMAN CTBP2_HUMAN]] Corepressor targeting diverse transcription regulators. Functions in brown adipose tissue (BAT) differentiation (By similarity). Isoform 2 probably acts as a scaffold for specialized synapses.	+	[https://www.uniprot.org/uniprot/CTBP2_HUMAN CTBP2_HUMAN] Corepressor targeting diverse transcription regulators. Functions in brown adipose tissue (BAT) differentiation (By similarity). Isoform 2 probably acts as a scaffold for specialized synapses.
-	~~<div style="background-color:#fffaf0;">~~	+
-	~~== Publication Abstract from PubMed ==~~	+
-	C-terminal binding proteins 1 and 2 (CtBP1 and CtBP2) are transcriptional regulators that activate or repress many genes involved in cellular development, apoptosis, and metastasis. NADH-dependent CtBP activation has been implicated in multiple types of cancer and poor patient prognosis. Central to understanding activation of CtBP in oncogenesis is uncovering how NADH triggers protein assembly, what level of assembly occurs, and if oncogenic activity depends upon such assembly. Here, we present the cryoelectron microscopic structures of two different constructs of CtBP2 corroborating that the native state of CtBP2 in the presence of NADH is tetrameric. The physiological relevance of the observed tetramer was demonstrated in cell culture, showing that CtBP tetramer-destabilizing mutants are defective for cell migration, transcriptional repression of E-cadherin, and activation of TIAM1. Together with our cryoelectron microscopy studies, these results highlight the tetramer as the functional oligomeric form of CtBP2.	+
-		+
-	Cryo-EM Structure of CtBP2 Confirms Tetrameric Architecture.,Jecrois AM, Dcona MM, Deng X, Bandyopadhyay D, Grossman SR, Schiffer CA, Royer WE Jr Structure. 2020 Nov 27. pii: S0969-2126(20)30420-2. doi:, 10.1016/j.str.2020.11.008. PMID:33264605<ref>PMID:33264605</ref>	+
-		+
-	~~From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>~~	+
-	~~</div>~~	+
-	~~<div class="pdbe-citations 6wkw" style="background-color:#fffaf0;"></div>~~	+
-	~~== References ==~~	+
-	~~<references/>~~	+
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: ~~Human~~]]	+	[[Category: Homo sapiens]]
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: Jecrois~~, A M]]~~	+	[[Category: Jecrois AM]]
-	~~[[Category: Cancer]]~~	+
-	~~[[Category: Gene regulation]]~~	+
-	~~[[Category: Gene repression]]~~	+
-	~~[[Category: Metabolic sensor]]~~	+
-	~~[[Category: Transcriptional corepression~~]]	+

OCA at 06:53, 14 April 2021

OCA — Wed, 14 Apr 2021 06:53:15 GMT

←Older revision		Revision as of 06:53, 14 April 2021
Line 3:		Line 3:
	<StructureSection load='6wkw' size='340' side='right'caption='[[6wkw]], [[Resolution\|resolution]] 3.60Å' scene=''>		<StructureSection load='6wkw' size='340' side='right'caption='[[6wkw]], [[Resolution\|resolution]] 3.60Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[6wkw]] is a 4 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/Human Human]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6WKW OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://proteopedia.org/fgij/fg.htm?mol=6WKW FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[6wkw]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Human Human]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6WKW OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=6WKW FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=NAD:NICOTINAMIDE-ADENINE-DINUCLEOTIDE'>NAD</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=NAD:NICOTINAMIDE-ADENINE-DINUCLEOTIDE'>NAD</scene></td></tr>
-	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">CTBP2 ([~~http~~://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=9606 HUMAN])</td></tr>	+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">CTBP2 ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=9606 HUMAN])</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://proteopedia.org/fgij/fg.htm?mol=6wkw FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6wkw OCA], [~~http~~://pdbe.org/6wkw PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=6wkw RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/6wkw PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=6wkw ProSAT]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=6wkw FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6wkw OCA], [https://pdbe.org/6wkw PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=6wkw RCSB], [https://www.ebi.ac.uk/pdbsum/6wkw PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=6wkw ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
-	[[~~http~~://www.uniprot.org/uniprot/CTBP2_HUMAN CTBP2_HUMAN]] Corepressor targeting diverse transcription regulators. Functions in brown adipose tissue (BAT) differentiation (By similarity). Isoform 2 probably acts as a scaffold for specialized synapses.	+	[[https://www.uniprot.org/uniprot/CTBP2_HUMAN CTBP2_HUMAN]] Corepressor targeting diverse transcription regulators. Functions in brown adipose tissue (BAT) differentiation (By similarity). Isoform 2 probably acts as a scaffold for specialized synapses.
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
	== Publication Abstract from PubMed ==		== Publication Abstract from PubMed ==

OCA at 12:48, 16 December 2020

OCA — Wed, 16 Dec 2020 12:48:52 GMT

←Older revision		Revision as of 12:48, 16 December 2020
Line 1:		Line 1:

	==EM structure of CtBP2 with a minimal dehydrogenase domain of CtBP2==		==EM structure of CtBP2 with a minimal dehydrogenase domain of CtBP2==
-	<StructureSection load='6wkw' size='340' side='right'caption='[[6wkw]]' scene=''>	+	<StructureSection load='6wkw' size='340' side='right'caption='[[6wkw]], [[Resolution\|resolution]] 3.60Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6WKW OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=6WKW FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[6wkw]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Human Human]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6WKW OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=6WKW FirstGlance]. <br>
-	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=6wkw FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6wkw OCA], [http://pdbe.org/6wkw PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6wkw RCSB], [http://www.ebi.ac.uk/pdbsum/6wkw PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6wkw ProSAT]</span></td></tr>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=NAD:NICOTINAMIDE-ADENINE-DINUCLEOTIDE'>NAD</scene></td></tr>
		+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">CTBP2 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=9606 HUMAN])</td></tr>
		+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=6wkw FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6wkw OCA], [http://pdbe.org/6wkw PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6wkw RCSB], [http://www.ebi.ac.uk/pdbsum/6wkw PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6wkw ProSAT]</span></td></tr>
	</table>		</table>
		+	== Function ==
		+	[[http://www.uniprot.org/uniprot/CTBP2_HUMAN CTBP2_HUMAN]] Corepressor targeting diverse transcription regulators. Functions in brown adipose tissue (BAT) differentiation (By similarity). Isoform 2 probably acts as a scaffold for specialized synapses.
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	C-terminal binding proteins 1 and 2 (CtBP1 and CtBP2) are transcriptional regulators that activate or repress many genes involved in cellular development, apoptosis, and metastasis. NADH-dependent CtBP activation has been implicated in multiple types of cancer and poor patient prognosis. Central to understanding activation of CtBP in oncogenesis is uncovering how NADH triggers protein assembly, what level of assembly occurs, and if oncogenic activity depends upon such assembly. Here, we present the cryoelectron microscopic structures of two different constructs of CtBP2 corroborating that the native state of CtBP2 in the presence of NADH is tetrameric. The physiological relevance of the observed tetramer was demonstrated in cell culture, showing that CtBP tetramer-destabilizing mutants are defective for cell migration, transcriptional repression of E-cadherin, and activation of TIAM1. Together with our cryoelectron microscopy studies, these results highlight the tetramer as the functional oligomeric form of CtBP2.
		+
		+	Cryo-EM Structure of CtBP2 Confirms Tetrameric Architecture.,Jecrois AM, Dcona MM, Deng X, Bandyopadhyay D, Grossman SR, Schiffer CA, Royer WE Jr Structure. 2020 Nov 27. pii: S0969-2126(20)30420-2. doi:, 10.1016/j.str.2020.11.008. PMID:33264605<ref>PMID:33264605</ref>
		+
		+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
		+	</div>
		+	<div class="pdbe-citations 6wkw" style="background-color:#fffaf0;"></div>
		+	== References ==
		+	<references/>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
		+	[[Category: Human]]
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: Jecrois AM]]	+	[[Category: Jecrois, A M]]
		+	[[Category: Cancer]]
		+	[[Category: Gene regulation]]
		+	[[Category: Gene repression]]
		+	[[Category: Metabolic sensor]]
		+	[[Category: Transcriptional corepression]]

OCA at 07:46, 2 December 2020

OCA — Wed, 02 Dec 2020 07:46:26 GMT

←Older revision		Revision as of 07:46, 2 December 2020
Line 1:		Line 1:
-	'''Unreleased structure'''

-	~~The entry 6wkw is ON HOLD~~	+	==EM structure of CtBP2 with a minimal dehydrogenase domain of CtBP2==
-		+	<StructureSection load='6wkw' size='340' side='right'caption='[[6wkw]]' scene=''>
-	~~Authors: Jecrois, A.M.~~	+	== Structural highlights ==
-		+	<table><tr><td colspan='2'>Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6WKW OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=6WKW FirstGlance]. <br>
-	~~Description:~~ EM structure of CtBP2 with a minimal dehydrogenase domain of CtBP2	+	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=6wkw FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6wkw OCA], [http://pdbe.org/6wkw PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6wkw RCSB], [http://www.ebi.ac.uk/pdbsum/6wkw PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6wkw ProSAT]</span></td></tr>
-	[[Category: ~~Unreleased~~ Structures]]	+	</table>
-	[[Category: Jecrois~~, A.M~~]]	+	__TOC__
		+	</StructureSection>
		+	[[Category: Large Structures]]
		+	[[Category: Jecrois AM]]

OCA: Protected "6wkw" [edit=sysop:move=sysop]

OCA — Wed, 29 Apr 2020 05:13:08 GMT

Protected "6wkw" [edit=sysop:move=sysop]

←Older revision

Revision as of 05:13, 29 April 2020

OCA: New page: '''Unreleased structure''' The entry 6wkw is ON HOLD Authors: Jecrois, A.M. Description: EM structure of CtBP2 with a minimal dehydrogenase domain of CtBP2 [[Category: Unreleased Struc...

OCA — Wed, 29 Apr 2020 05:13:06 GMT

New page: '''Unreleased structure''' The entry 6wkw is ON HOLD Authors: Jecrois, A.M. Description: EM structure of CtBP2 with a minimal dehydrogenase domain of CtBP2 [[Category: Unreleased Struc...

New page

'''Unreleased structure'''

The entry 6wkw is ON HOLD

Authors: Jecrois, A.M.

Description: EM structure of CtBP2 with a minimal dehydrogenase domain of CtBP2
[[Category: Unreleased Structures]]
[[Category: Jecrois, A.M]]