6wyh - Revision history

OCA at 14:39, 18 October 2023

OCA — Wed, 18 Oct 2023 14:39:05 GMT

←Older revision		Revision as of 14:39, 18 October 2023
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	<StructureSection load='6wyh' size='340' side='right'caption='[[6wyh]], [[Resolution\|resolution]] 2.22Å' scene=''>		<StructureSection load='6wyh' size='340' side='right'caption='[[6wyh]], [[Resolution\|resolution]] 2.22Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[6wyh]] is a 4 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/~~Human Human~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6WYH OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://proteopedia.org/fgij/fg.htm?mol=6WYH FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[6wyh]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6WYH OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=6WYH FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=FE:FE+(III)+ION'>FE</scene>, <scene name='pdbligand=RFT:butyl+1-{[2-(2,5-dioxopyrrolidin-1-yl)ethyl]amino}-2-methyl-1-oxopropan-2-yl+carbonotrithioate'>RFT</scene~~></td></tr>~~	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 2.22Å</td></tr>
-	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">FTH1, FTH, FTHL6, OK/SW-cl.84, PIG15 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=9606 HUMAN])</td></tr>	+	<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=FE:FE+(III)+ION'>FE</scene>, <scene name='pdbligand=RFT:butyl+1-{[2-(2,5-dioxopyrrolidin-1-yl)ethyl]amino}-2-methyl-1-oxopropan-2-yl+carbonotrithioate'>RFT</scene></td></tr>
-	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Ferroxidase Ferroxidase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.16.3.1 1.16.3.1] </span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=6wyh FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6wyh OCA], [https://pdbe.org/6wyh PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=6wyh RCSB], [https://www.ebi.ac.uk/pdbsum/6wyh PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=6wyh ProSAT]</span></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://proteopedia.org/fgij/fg.htm?mol=6wyh FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6wyh OCA], [~~http~~://pdbe.org/6wyh PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=6wyh RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/6wyh PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=6wyh ProSAT]</span></td></tr>	+
	</table>		</table>
	== Function ==		== Function ==
-	[~~[http~~://www.uniprot.org/uniprot/FRIH_HUMAN FRIH_HUMAN]] Stores iron in a soluble, non-toxic, readily available form. Important for iron homeostasis. Has ferroxidase activity. Iron is taken up in the ferrous form and deposited as ferric hydroxides after oxidation. Also plays a role in delivery of iron to cells. Mediates iron uptake in capsule cells of the developing kidney (By similarity).	+	[https://www.uniprot.org/uniprot/FRIH_HUMAN FRIH_HUMAN] Stores iron in a soluble, non-toxic, readily available form. Important for iron homeostasis. Has ferroxidase activity. Iron is taken up in the ferrous form and deposited as ferric hydroxides after oxidation. Also plays a role in delivery of iron to cells. Mediates iron uptake in capsule cells of the developing kidney (By similarity).
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
	== Publication Abstract from PubMed ==		== Publication Abstract from PubMed ==
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	</div>		</div>
	<div class="pdbe-citations 6wyh" style="background-color:#fffaf0;"></div>		<div class="pdbe-citations 6wyh" style="background-color:#fffaf0;"></div>
		+
		+	==See Also==
		+	*[[Ferritin 3D structures\|Ferritin 3D structures]]
	== References ==		== References ==
	<references/>		<references/>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: ~~Ferroxidase]]~~	+	[[Category: Homo sapiens]]
-	~~[[Category: Human~~]]	+
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: Bailey~~, J B~~]]	+	[[Category: Bailey JB]]
-	[[Category: Zhang, L]]	+	[[Category: Zhang L]]
-	~~[[Category: Crystal hydrogel hybrid]]~~	+
-	~~[[Category: Ferritin]]~~	+
-	~~[[Category: Hydrogel]]~~	+
-	~~[[Category: Oxidoreductase]]~~	+
-	~~[[Category: Polymer]]~~	+
-	~~[[Category: Polymer integrated crystal]]~~	+
-	~~[[Category: Raft polymerization~~]]	+

OCA at 07:11, 25 November 2020

OCA — Wed, 25 Nov 2020 07:11:50 GMT

←Older revision		Revision as of 07:11, 25 November 2020
Line 1:		Line 1:

	==Crystal structure of Human H-chain Ferritin variant 157C Delta C-star Modified with a RAFT Agent Soaked in an Acrylate Solution==		==Crystal structure of Human H-chain Ferritin variant 157C Delta C-star Modified with a RAFT Agent Soaked in an Acrylate Solution==
-	<StructureSection load='6wyh' size='340' side='right'caption='[[6wyh]]' scene=''>	+	<StructureSection load='6wyh' size='340' side='right'caption='[[6wyh]], [[Resolution\|resolution]] 2.22Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6WYH OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=6WYH FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[6wyh]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Human Human]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6WYH OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=6WYH FirstGlance]. <br>
-	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=6wyh FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6wyh OCA], [http://pdbe.org/6wyh PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6wyh RCSB], [http://www.ebi.ac.uk/pdbsum/6wyh PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6wyh ProSAT]</span></td></tr>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=FE:FE+(III)+ION'>FE</scene>, <scene name='pdbligand=RFT:butyl+1-{[2-(2,5-dioxopyrrolidin-1-yl)ethyl]amino}-2-methyl-1-oxopropan-2-yl+carbonotrithioate'>RFT</scene></td></tr>
		+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">FTH1, FTH, FTHL6, OK/SW-cl.84, PIG15 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=9606 HUMAN])</td></tr>
		+	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Ferroxidase Ferroxidase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.16.3.1 1.16.3.1] </span></td></tr>
		+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=6wyh FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6wyh OCA], [http://pdbe.org/6wyh PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6wyh RCSB], [http://www.ebi.ac.uk/pdbsum/6wyh PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6wyh ProSAT]</span></td></tr>
	</table>		</table>
		+	== Function ==
		+	[[http://www.uniprot.org/uniprot/FRIH_HUMAN FRIH_HUMAN]] Stores iron in a soluble, non-toxic, readily available form. Important for iron homeostasis. Has ferroxidase activity. Iron is taken up in the ferrous form and deposited as ferric hydroxides after oxidation. Also plays a role in delivery of iron to cells. Mediates iron uptake in capsule cells of the developing kidney (By similarity).
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	The mechanical and functional properties of many crystalline materials depend on cooperative changes in lattice arrangements in response to external perturbations. However, the flexibility and adaptiveness of crystalline materials are limited. Additionally, the bottom-up, molecular-level design of crystals with desired dynamic and mechanical properties at the macroscopic level remains a considerable challenge. To address these challenges, we had previously integrated mesoporous, cubic ferritin crystals with hydrogel networks, resulting in hybrid materials (polymer-integrated crystals or PIX) which could undergo dramatic structural changes while maintaining crystalline periodicity and display efficient self-healing. The dynamics and mechanics of these ferritin-PIX were devoid of directionality, which is an important attribute of many molecular and macroscopic materials/devices. In this study, we report that such directionality can be achieved through the use of ferritin crystals with anisotropic symmetries (rhombohedral or trigonal), which enable the templated formation of patterned hydrogel networks in crystallo. The resulting PIX expand and contract anisotropically without losing crystallinity, undergo prompt bending motions in response to stimuli, and self-heal efficiently, capturing some of the essential features of sophisticated biological devices like skeletal muscles.
		+
		+	Anisotropic Dynamics and Mechanics of Macromolecular Crystals Containing Lattice-Patterned Polymer Networks.,Han K, Bailey JB, Zhang L, Tezcan FA J Am Chem Soc. 2020 Oct 30. doi: 10.1021/jacs.0c10065. PMID:33124805<ref>PMID:33124805</ref>
		+
		+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
		+	</div>
		+	<div class="pdbe-citations 6wyh" style="background-color:#fffaf0;"></div>
		+	== References ==
		+	<references/>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
		+	[[Category: Ferroxidase]]
		+	[[Category: Human]]
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: Bailey JB]]	+	[[Category: Bailey, J B]]
-	[[Category: Zhang L]]	+	[[Category: Zhang, L]]
		+	[[Category: Crystal hydrogel hybrid]]
		+	[[Category: Ferritin]]
		+	[[Category: Hydrogel]]
		+	[[Category: Oxidoreductase]]
		+	[[Category: Polymer]]
		+	[[Category: Polymer integrated crystal]]
		+	[[Category: Raft polymerization]]

OCA at 08:00, 11 November 2020

OCA — Wed, 11 Nov 2020 08:00:11 GMT

←Older revision		Revision as of 08:00, 11 November 2020
Line 1:		Line 1:
-	'''Unreleased structure'''

-	~~The entry~~ 6wyh ~~is ON HOLD until Paper Publication~~	+	==Crystal structure of Human H-chain Ferritin variant 157C Delta C-star Modified with a RAFT Agent Soaked in an Acrylate Solution==
-		+	<StructureSection load='6wyh' size='340' side='right'caption='[[6wyh]]' scene=''>
-	~~Authors~~:	+	== Structural highlights ==
-		+	<table><tr><td colspan='2'>Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6WYH OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=6WYH FirstGlance]. <br>
-	~~Description~~:	+	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=6wyh FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6wyh OCA], [http://pdbe.org/6wyh PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6wyh RCSB], [http://www.ebi.ac.uk/pdbsum/6wyh PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6wyh ProSAT]</span></td></tr>
-	[[Category: ~~Unreleased~~ Structures]]	+	</table>
		+	__TOC__
		+	</StructureSection>
		+	[[Category: Large Structures]]
		+	[[Category: Bailey JB]]
		+	[[Category: Zhang L]]

OCA at 04:54, 10 June 2020

OCA — Wed, 10 Jun 2020 04:54:18 GMT

←Older revision		Revision as of 04:54, 10 June 2020
Line 1:		Line 1:
	'''Unreleased structure'''		'''Unreleased structure'''

-	The entry 6wyh is ON HOLD	+	The entry 6wyh is ON HOLD until Paper Publication

	Authors:		Authors:

OCA: Protected "6wyh" [edit=sysop:move=sysop]

OCA — Wed, 20 May 2020 04:22:05 GMT

Protected "6wyh" [edit=sysop:move=sysop]

←Older revision

Revision as of 04:22, 20 May 2020

OCA: New page: '''Unreleased structure''' The entry 6wyh is ON HOLD Authors: Description: Category: Unreleased Structures

OCA — Wed, 20 May 2020 04:22:03 GMT

New page: '''Unreleased structure''' The entry 6wyh is ON HOLD Authors: Description: Category: Unreleased Structures

New page

'''Unreleased structure'''

The entry 6wyh is ON HOLD

Authors:

Description:
[[Category: Unreleased Structures]]