6x9x - Revision history

OCA at 14:47, 18 October 2023

OCA — Wed, 18 Oct 2023 14:47:45 GMT

←Older revision		Revision as of 14:47, 18 October 2023
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-	====	+	==Crystal structure of Fab fragment of Anti-HCV E2 antibody (HC84.26)==
-	<StructureSection load='6x9x' size='340' side='right'caption='[[6x9x]]' scene=''>	+	<StructureSection load='6x9x' size='340' side='right'caption='[[6x9x]], [[Resolution\|resolution]] 1.80Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id= OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://proteopedia.org/fgij/fg.htm?mol= FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[6x9x]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6X9X OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=6X9X FirstGlance]. <br>
-	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://proteopedia.org/fgij/fg.htm?mol=6x9x FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6x9x OCA], [~~http~~://pdbe.org/6x9x PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=6x9x RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/6x9x PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=6x9x ProSAT]</span></td></tr>	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 1.8Å</td></tr>
		+	<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ACT:ACETATE+ION'>ACT</scene>, <scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene></td></tr>
		+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=6x9x FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6x9x OCA], [https://pdbe.org/6x9x PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=6x9x RCSB], [https://www.ebi.ac.uk/pdbsum/6x9x PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=6x9x ProSAT]</span></td></tr>
	</table>		</table>
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	We determined the crystal structure to 1.8 A resolution of the Fab fragment of an affinity-matured human monoclonal antibody (HC84.26.5D) that recognizes the E2 envelope glycoprotein of hepatitis C virus (HCV). Unlike conventional Fabs, which are monovalent monomers, Fab HC84.26.5D assembles into a bivalent domain-swapped dimer in which the two V(L)/V(H) modules are separated by ~25 A. In solution, Fab HC84.26.5D exists predominantly as a dimer (~80%) in equilibrium with the monomeric form of the Fab (~20%). Dimerization is mediated entirely by deletion of a single residue, V(H)Ser113 (Kabat numbering), in the elbow region linking the V(H) and C(H)1 domains. In agreement with the crystal structure, dimeric Fab HC84.26.5D is able to bind two HCV E2 molecules in solution. This is only the second example of a domain-swapped Fab dimer from among >3000 Fab crystal structures determined to date. Moreover, the architecture of the doughnut-shaped Fab HC84.26.5D dimer is completely different from that of the previously reported Fab 2G12 dimer. We demonstrate that the highly identifiable shape of dimeric Fab HC84.26.5D makes it useful as a fiducial marker for single-particle cryoEM analysis of HCV E2. Bivalent domain-swapped Fab dimers engineered on the basis of HC84.26.5D may also serve as a means of doubling the effective size of conventional Fab-protein complexes for cryoEM.
		+
		+	Crystal Structure of a Bivalent Antibody Fab Fragment.,Shahid S, Gao M, Travis Gallagher D, Pozharski E, Brinson RG, Keck ZY, Foung SKH, Fuerst TR, Mariuzza RA J Mol Biol. 2021 Jan 22;433(2):166714. doi: 10.1016/j.jmb.2020.11.013. Epub 2020 , Nov 19. PMID:33220264<ref>PMID:33220264</ref>
		+
		+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
		+	</div>
		+	<div class="pdbe-citations 6x9x" style="background-color:#fffaf0;"></div>
		+
		+	==See Also==
		+	*[[Monoclonal Antibodies 3D structures\|Monoclonal Antibodies 3D structures]]
		+	== References ==
		+	<references/>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
		+	[[Category: Homo sapiens]]
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: ~~Z-disk~~]]	+	[[Category: Mariuzza RA]]
		+	[[Category: Shahid S]]

OCA at 07:47, 2 December 2020

OCA — Wed, 02 Dec 2020 07:47:11 GMT

←Older revision		Revision as of 07:47, 2 December 2020
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-	'''Unreleased structure'''

-	~~The entry~~ 6x9x ~~is ON HOLD until Paper Publication~~	+	====
-		+	<StructureSection load='6x9x' size='340' side='right'caption='[[6x9x]]' scene=''>
-	~~Authors~~: ~~Shahid, S~~.~~, Mariuzza, R~~.A.	+	== Structural highlights ==
-		+	<table><tr><td colspan='2'>Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id= OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol= FirstGlance]. <br>
-	~~Description~~: ~~Crystal structure of Fab fragment of Anti~~-~~HCV E2 antibody (HC84~~.~~26)~~	+	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=6x9x FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6x9x OCA], [http://pdbe.org/6x9x PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6x9x RCSB], [http://www.ebi.ac.uk/pdbsum/6x9x PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6x9x ProSAT]</span></td></tr>
-	[[~~Category~~: ~~Unreleased Structures~~]]	+	</table>
-	[[Category: ~~Mariuzza, R.A~~]]	+	__TOC__
-	[[Category: ~~Shahid, S~~]]	+	</StructureSection>
		+	[[Category: Large Structures]]
		+	[[Category: Z-disk]]

OCA at 06:35, 16 September 2020

OCA — Wed, 16 Sep 2020 06:35:26 GMT

←Older revision		Revision as of 06:35, 16 September 2020
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	'''Unreleased structure'''		'''Unreleased structure'''

-	The entry 6x9x is ON HOLD	+	The entry 6x9x is ON HOLD until Paper Publication

	Authors: Shahid, S., Mariuzza, R.A.		Authors: Shahid, S., Mariuzza, R.A.

OCA: Protected "6x9x" [edit=sysop:move=sysop]

OCA — Wed, 10 Jun 2020 05:01:49 GMT

Protected "6x9x" [edit=sysop:move=sysop]

←Older revision

Revision as of 05:01, 10 June 2020

OCA: New page: '''Unreleased structure''' The entry 6x9x is ON HOLD Authors: Shahid, S., Mariuzza, R.A. Description: Crystal structure of Fab fragment of Anti-HCV E2 antibody (HC84.26) [[Category: Un...

OCA — Wed, 10 Jun 2020 05:01:48 GMT

New page: '''Unreleased structure''' The entry 6x9x is ON HOLD Authors: Shahid, S., Mariuzza, R.A. Description: Crystal structure of Fab fragment of Anti-HCV E2 antibody (HC84.26) [[Category: Un...

New page

'''Unreleased structure'''

The entry 6x9x is ON HOLD

Authors: Shahid, S., Mariuzza, R.A.

Description: Crystal structure of Fab fragment of Anti-HCV E2 antibody (HC84.26)
[[Category: Unreleased Structures]]
[[Category: Mariuzza, R.A]]
[[Category: Shahid, S]]