6xhy - Revision history

OCA at 10:52, 15 November 2023

OCA — Wed, 15 Nov 2023 10:52:44 GMT

←Older revision		Revision as of 10:52, 15 November 2023
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	==See Also==		==See Also==
-	*[[Ribosomal protein THX 3D structures\|Ribosomal protein THX 3D structures]]
	*[[Ribosome 3D structures\|Ribosome 3D structures]]		*[[Ribosome 3D structures\|Ribosome 3D structures]]
	__TOC__		__TOC__

OCA at 14:52, 18 October 2023

OCA — Wed, 18 Oct 2023 14:52:49 GMT

←Older revision		Revision as of 14:52, 18 October 2023
Line 1:		Line 1:

-	====	+	==Crystal structure of the Thermus thermophilus 70S ribosome in complex with telithromycin, mRNA, aminoacylated A- and P-site tRNAs, and deacylated E-site tRNA at 2.60A resolution==
-	<StructureSection load='6xhy' size='340' side='right'caption='[[6xhy]]' scene=''>	+	<StructureSection load='6xhy' size='340' side='right'caption='[[6xhy]], [[Resolution\|resolution]] 2.60Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id= OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol= FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[6xhy]] is a 20 chain structure with sequence from [https://en.wikipedia.org/wiki/Thermus_thermophilus_HB8 Thermus thermophilus HB8]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6XHY OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=6XHY FirstGlance]. <br>
-	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=6xhy FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6xhy OCA], [https://pdbe.org/6xhy PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=6xhy RCSB], [https://www.ebi.ac.uk/pdbsum/6xhy PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=6xhy ProSAT]</span></td></tr>	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 2.6Å</td></tr>
		+	<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=0TD:(3S)-3-(METHYLSULFANYL)-L-ASPARTIC+ACID'>0TD</scene>, <scene name='pdbligand=2MA:2-METHYLADENOSINE-5-MONOPHOSPHATE'>2MA</scene>, <scene name='pdbligand=2MG:2N-METHYLGUANOSINE-5-MONOPHOSPHATE'>2MG</scene>, <scene name='pdbligand=2MU:2,5-DIMETHYLURIDINE-5-MONOPHOSPHATE'>2MU</scene>, <scene name='pdbligand=31H:3-DEOXY-3-[(N-FORMYL-L-METHIONYL)AMINO]ADENOSINE+5-(DIHYDROGEN+PHOSPHATE)'>31H</scene>, <scene name='pdbligand=4OC:4N,O2-METHYLCYTIDINE-5-MONOPHOSPHATE'>4OC</scene>, <scene name='pdbligand=4SU:4-THIOURIDINE-5-MONOPHOSPHATE'>4SU</scene>, <scene name='pdbligand=5MC:5-METHYLCYTIDINE-5-MONOPHOSPHATE'>5MC</scene>, <scene name='pdbligand=5MU:5-METHYLURIDINE+5-MONOPHOSPHATE'>5MU</scene>, <scene name='pdbligand=7MG:7N-METHYL-8-HYDROGUANOSINE-5-MONOPHOSPHATE'>7MG</scene>, <scene name='pdbligand=F3N:3-DEOXY-3-(L-PHENYLALANYLAMINO)ADENOSINE+5-(DIHYDROGEN+PHOSPHATE)'>F3N</scene>, <scene name='pdbligand=K:POTASSIUM+ION'>K</scene>, <scene name='pdbligand=M2G:N2-DIMETHYLGUANOSINE-5-MONOPHOSPHATE'>M2G</scene>, <scene name='pdbligand=MA6:6N-DIMETHYLADENOSINE-5-MONOPHOSHATE'>MA6</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=MIA:2-METHYLTHIO-N6-ISOPENTENYL-ADENOSINE-5-MONOPHOSPHATE'>MIA</scene>, <scene name='pdbligand=OMG:O2-METHYLGUANOSINE-5-MONOPHOSPHATE'>OMG</scene>, <scene name='pdbligand=PSU:PSEUDOURIDINE-5-MONOPHOSPHATE'>PSU</scene>, <scene name='pdbligand=SF4:IRON/SULFUR+CLUSTER'>SF4</scene>, <scene name='pdbligand=TEL:TELITHROMYCIN'>TEL</scene>, <scene name='pdbligand=UR3:3-METHYLURIDINE-5-MONOPHOSHATE'>UR3</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
		+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=6xhy FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6xhy OCA], [https://pdbe.org/6xhy PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=6xhy RCSB], [https://www.ebi.ac.uk/pdbsum/6xhy PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=6xhy ProSAT]</span></td></tr>
	</table>		</table>
		+	== Function ==
		+	[https://www.uniprot.org/uniprot/RL2_THET8 RL2_THET8] One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity; this is somewhat controversial (By similarity). Makes several contacts with the 16S rRNA (forming bridge B7b) in the 70S ribosome.[HAMAP-Rule:MF_01320_B]
		+
		+	==See Also==
		+	*[[Ribosomal protein THX 3D structures\|Ribosomal protein THX 3D structures]]
		+	*[[Ribosome 3D structures\|Ribosome 3D structures]]
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: ~~Z-disk~~]]	+	[[Category: Thermus thermophilus HB8]]
		+	[[Category: Aleksandrova EV]]
		+	[[Category: Atkinson GC]]
		+	[[Category: Gregory ST]]
		+	[[Category: Mankin AS]]
		+	[[Category: Polikanov YS]]
		+	[[Category: Svetlov MS]]
		+	[[Category: Syroegin EA]]

OCA at 08:01, 27 January 2021

OCA — Wed, 27 Jan 2021 08:01:29 GMT

←Older revision		Revision as of 08:01, 27 January 2021
Line 3:		Line 3:
	<StructureSection load='6xhy' size='340' side='right'caption='[[6xhy]]' scene=''>		<StructureSection load='6xhy' size='340' side='right'caption='[[6xhy]]' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id= OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://proteopedia.org/fgij/fg.htm?mol= FirstGlance]. <br>	+	<table><tr><td colspan='2'>Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id= OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol= FirstGlance]. <br>
-	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://proteopedia.org/fgij/fg.htm?mol=6xhy FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6xhy OCA], [~~http~~://pdbe.org/6xhy PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=6xhy RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/6xhy PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=6xhy ProSAT]</span></td></tr>	+	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=6xhy FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6xhy OCA], [https://pdbe.org/6xhy PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=6xhy RCSB], [https://www.ebi.ac.uk/pdbsum/6xhy PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=6xhy ProSAT]</span></td></tr>
	</table>		</table>
	__TOC__		__TOC__

OCA at 10:31, 24 December 2020

OCA — Thu, 24 Dec 2020 10:31:48 GMT

←Older revision		Revision as of 10:31, 24 December 2020
Line 1:		Line 1:
-	'''Unreleased structure'''

-	~~The entry~~ 6xhy ~~is ON HOLD~~	+	====
-		+	<StructureSection load='6xhy' size='340' side='right'caption='[[6xhy]]' scene=''>
-	~~Authors~~: ~~Svetlov, M~~.S.~~, Syroegin, E~~.A.~~, Aleksandrova, E~~.V.~~, Atkinson, G~~.C.~~, Gregory, S.T~~., ~~Mankin, A~~.S.~~, Polikanov, Y~~.S.	+	== Structural highlights ==
-		+	<table><tr><td colspan='2'>Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id= OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol= FirstGlance]. <br>
-	~~Description: Crystal structure of the Thermus thermophilus 70S ribosome in complex with telithromycin, mRNA, aminoacylated A~~-~~and P-site tRNAs~~, ~~and deacylated E-site tRNA at 2.60A resolution~~	+	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=6xhy FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6xhy OCA], [http://pdbe.org/6xhy PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6xhy RCSB], [http://www.ebi.ac.uk/pdbsum/6xhy PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6xhy ProSAT]</span></td></tr>
-	[~~[Category~~: ~~Unreleased Structures~~]]	+	</table>
-	[~~[Category~~: ~~Svetlov, M~~.S]]	+	__TOC__
-	~~[[Category: Mankin~~, ~~A.S]]~~	+	</StructureSection>
-	[~~[Category~~: ~~Polikanov, Y~~.S]]	+	[[Category: Large Structures]]
-	~~[[Category: Syroegin~~, ~~E.A]]~~	+	[[Category: Z-disk]]
-	[~~[Category~~: ~~Gregory, S~~.T]]	+
-	[[Category: ~~Atkinson, G.C~~]]	+
-	[[Category: ~~Aleksandrova, E.V~~]]	+

OCA at 18:47, 28 October 2020

OCA — Wed, 28 Oct 2020 18:47:59 GMT

←Older revision		Revision as of 18:47, 28 October 2020
Line 5:		Line 5:
	Authors: Svetlov, M.S., Syroegin, E.A., Aleksandrova, E.V., Atkinson, G.C., Gregory, S.T., Mankin, A.S., Polikanov, Y.S.		Authors: Svetlov, M.S., Syroegin, E.A., Aleksandrova, E.V., Atkinson, G.C., Gregory, S.T., Mankin, A.S., Polikanov, Y.S.

-	Description: Crystal structure of the ~~A2058-unmethylated~~ Thermus thermophilus 70S ribosome in complex with telithromycin, mRNA, aminoacylated A-and P-site tRNAs, and deacylated E-site tRNA at 2.60A resolution	+	Description: Crystal structure of the Thermus thermophilus 70S ribosome in complex with telithromycin, mRNA, aminoacylated A-and P-site tRNAs, and deacylated E-site tRNA at 2.60A resolution
	[[Category: Unreleased Structures]]		[[Category: Unreleased Structures]]
		+	[[Category: Svetlov, M.S]]
		+	[[Category: Mankin, A.S]]
	[[Category: Polikanov, Y.S]]		[[Category: Polikanov, Y.S]]
	[[Category: Syroegin, E.A]]		[[Category: Syroegin, E.A]]
	[[Category: Gregory, S.T]]		[[Category: Gregory, S.T]]
-	[[Category: Aleksandrova, E.V]]
-	[[Category: Mankin, A.S]]
-	[[Category: Svetlov, M.S]]
	[[Category: Atkinson, G.C]]		[[Category: Atkinson, G.C]]
		+	[[Category: Aleksandrova, E.V]]

OCA: Protected "6xhy" [edit=sysop:move=sysop]

OCA — Wed, 08 Jul 2020 10:47:46 GMT

Protected "6xhy" [edit=sysop:move=sysop]

←Older revision

Revision as of 10:47, 8 July 2020

OCA: New page: '''Unreleased structure''' The entry 6xhy is ON HOLD Authors: Svetlov, M.S., Syroegin, E.A., Aleksandrova, E.V., Atkinson, G.C., Gregory, S.T., Mankin, A.S., Polikanov, Y.S. Descriptio...

OCA — Wed, 08 Jul 2020 10:47:44 GMT

New page: '''Unreleased structure''' The entry 6xhy is ON HOLD Authors: Svetlov, M.S., Syroegin, E.A., Aleksandrova, E.V., Atkinson, G.C., Gregory, S.T., Mankin, A.S., Polikanov, Y.S. Descriptio...

New page

'''Unreleased structure'''

The entry 6xhy is ON HOLD

Authors: Svetlov, M.S., Syroegin, E.A., Aleksandrova, E.V., Atkinson, G.C., Gregory, S.T., Mankin, A.S., Polikanov, Y.S.

Description: Crystal structure of the A2058-unmethylated Thermus thermophilus 70S ribosome in complex with telithromycin, mRNA, aminoacylated A-and P-site tRNAs, and deacylated E-site tRNA at 2.60A resolution
[[Category: Unreleased Structures]]
[[Category: Polikanov, Y.S]]
[[Category: Syroegin, E.A]]
[[Category: Gregory, S.T]]
[[Category: Aleksandrova, E.V]]
[[Category: Mankin, A.S]]
[[Category: Svetlov, M.S]]
[[Category: Atkinson, G.C]]