6xvx - Revision history

OCA at 13:13, 24 January 2024

OCA — Wed, 24 Jan 2024 13:13:52 GMT

←Older revision		Revision as of 13:13, 24 January 2024
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	<StructureSection load='6xvx' size='340' side='right'caption='[[6xvx]], [[Resolution\|resolution]] 1.40Å' scene=''>		<StructureSection load='6xvx' size='340' side='right'caption='[[6xvx]], [[Resolution\|resolution]] 1.40Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[6xvx]] is a 2 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/Bos_taurus Bos taurus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6XVX OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=6XVX FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[6xvx]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Bos_taurus Bos taurus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6XVX OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=6XVX FirstGlance]. <br>
-	</td></tr><tr id='~~ligand~~'><td class="sblockLbl"><b>[[~~Ligand~~\|~~Ligands~~:]]</b></td><td class="sblockDat"~~><scene name~~=~~'pdbligand=ACT:ACETATE+ION'>ACT</scene~~>, ~~<scene name='pdbligand=RH3:RHODIUM(III)+ION'>RH3</scene>~~</td></tr>	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 1.4Å</td></tr>
-	<tr id='~~activity~~'><td class="sblockLbl"><b>~~Activity~~:</b></td><td class="sblockDat"><~~span class~~='~~plainlinks~~'>~~[http:~~/~~/en.wikipedia.org/wiki/Pancreatic_ribonuclease Pancreatic ribonuclease]~~, ~~with EC number [http~~:~~//www.brenda-enzymes.info/php/result_flat.php4?ecno=4.6.1.18 4.6.1.18]~~ </~~span~~></td></tr>	+	<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ACT:ACETATE+ION'>ACT</scene>, <scene name='pdbligand=RH3:RHODIUM(III)+ION'>RH3</scene></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=6xvx FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6xvx OCA], [~~http~~://pdbe.org/6xvx PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=6xvx RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/6xvx PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=6xvx ProSAT]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=6xvx FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6xvx OCA], [https://pdbe.org/6xvx PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=6xvx RCSB], [https://www.ebi.ac.uk/pdbsum/6xvx PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=6xvx ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
-	[~~[http~~://www.uniprot.org/uniprot/RNAS1_BOVIN RNAS1_BOVIN]] Endonuclease that catalyzes the cleavage of RNA on the 3' side of pyrimidine nucleotides. Acts on single stranded and double stranded RNA.<ref>PMID:7479688</ref>	+	[https://www.uniprot.org/uniprot/RNAS1_BOVIN RNAS1_BOVIN] Endonuclease that catalyzes the cleavage of RNA on the 3' side of pyrimidine nucleotides. Acts on single stranded and double stranded RNA.<ref>PMID:7479688</ref>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
	== Publication Abstract from PubMed ==		== Publication Abstract from PubMed ==
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	</div>		</div>
	<div class="pdbe-citations 6xvx" style="background-color:#fffaf0;"></div>		<div class="pdbe-citations 6xvx" style="background-color:#fffaf0;"></div>
		+
		+	==See Also==
		+	*[[Ribonuclease 3D structures\|Ribonuclease 3D structures]]
	== References ==		== References ==
	<references/>		<references/>
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	[[Category: Bos taurus]]		[[Category: Bos taurus]]
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	~~[[Category: Pancreatic ribonuclease]]~~	+	[[Category: Ferraro G]]
-	[[Category: Ferraro, G]]	+	[[Category: Merlino A]]
-	[[Category: Merlino, A]]	+
-	~~[[Category: Dirhodium]]~~	+
-	~~[[Category: Metalation]]~~	+
-	~~[[Category: Model protein]]~~	+
-	~~[[Category: Unknown function~~]]	+

OCA at 06:45, 19 February 2020

OCA — Wed, 19 Feb 2020 06:45:53 GMT

←Older revision		Revision as of 06:45, 19 February 2020
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-	'''Unreleased structure'''

-	~~The entry~~ 6xvx is ~~ON HOLD~~	+	==X-ray structure obtained upon reaction of dirhodium tetraacetate with RNase A (high resolution)==
		+	<StructureSection load='6xvx' size='340' side='right'caption='[[6xvx]], [[Resolution\|resolution]] 1.40Å' scene=''>
		+	== Structural highlights ==
		+	<table><tr><td colspan='2'>[[6xvx]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Bos_taurus Bos taurus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6XVX OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6XVX FirstGlance]. <br>
		+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=ACT:ACETATE+ION'>ACT</scene>, <scene name='pdbligand=RH3:RHODIUM(III)+ION'>RH3</scene></td></tr>
		+	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Pancreatic_ribonuclease Pancreatic ribonuclease], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=4.6.1.18 4.6.1.18] </span></td></tr>
		+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6xvx FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6xvx OCA], [http://pdbe.org/6xvx PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6xvx RCSB], [http://www.ebi.ac.uk/pdbsum/6xvx PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6xvx ProSAT]</span></td></tr>
		+	</table>
		+	== Function ==
		+	[[http://www.uniprot.org/uniprot/RNAS1_BOVIN RNAS1_BOVIN]] Endonuclease that catalyzes the cleavage of RNA on the 3' side of pyrimidine nucleotides. Acts on single stranded and double stranded RNA.<ref>PMID:7479688</ref>
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	The interactions between the cytotoxic paddlewheel dirhodium complex [Rh2(mu-O2CCH3)4] and the model protein bovine pancreatic ribonuclease (RNase A) were investigated by high-resolution mass spectrometry and X-ray crystallography. The results indicate that [Rh2(mu-O2CCH3)4] extensively reacts with RNase A. The metal compound binds the protein via coordination of the imidazole ring of a His side chain to one of its axial sites, while the dirhodium center and the acetato ligands remain unmodified. Data provide valuable information for the design of artificial dirhodium-containing metalloenzymes.

-	~~Authors~~: ~~Merlino, A~~., Ferraro, G.	+	Protein interactions of dirhodium tetraacetate: a structural study.,Ferraro G, Pratesi A, Messori L, Merlino A Dalton Trans. 2020 Feb 5. doi: 10.1039/c9dt04819g. PMID:32022076<ref>PMID:32022076</ref>

-	~~Description: X-ray structure obtained upon reaction~~ of ~~dirhodium tetraacetate with RNase A (high resolution)~~	+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
-	[[Category: ~~Unreleased~~ Structures]]	+	</div>
		+	<div class="pdbe-citations 6xvx" style="background-color:#fffaf0;"></div>
		+	== References ==
		+	<references/>
		+	__TOC__
		+	</StructureSection>
		+	[[Category: Bos taurus]]
		+	[[Category: Large Structures]]
		+	[[Category: Pancreatic ribonuclease]]
	[[Category: Ferraro, G]]		[[Category: Ferraro, G]]
	[[Category: Merlino, A]]		[[Category: Merlino, A]]
		+	[[Category: Dirhodium]]
		+	[[Category: Metalation]]
		+	[[Category: Model protein]]
		+	[[Category: Unknown function]]

OCA: Protected "6xvx" [edit=sysop:move=sysop]

OCA — Wed, 29 Jan 2020 13:50:40 GMT

Protected "6xvx" [edit=sysop:move=sysop]

←Older revision

Revision as of 13:50, 29 January 2020

OCA: New page: '''Unreleased structure''' The entry 6xvx is ON HOLD Authors: Merlino, A., Ferraro, G. Description: X-ray structure obtained upon reaction of dirhodium tetraacetate with RNase A (high ...

OCA — Wed, 29 Jan 2020 13:50:38 GMT

New page: '''Unreleased structure''' The entry 6xvx is ON HOLD Authors: Merlino, A., Ferraro, G. Description: X-ray structure obtained upon reaction of dirhodium tetraacetate with RNase A (high ...

New page

'''Unreleased structure'''

The entry 6xvx is ON HOLD

Authors: Merlino, A., Ferraro, G.

Description: X-ray structure obtained upon reaction of dirhodium tetraacetate with RNase A (high resolution)
[[Category: Unreleased Structures]]
[[Category: Ferraro, G]]
[[Category: Merlino, A]]