6yfs - Revision history

OCA at 13:25, 24 January 2024

OCA — Wed, 24 Jan 2024 13:25:57 GMT

←Older revision		Revision as of 13:25, 24 January 2024
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	<StructureSection load='6yfs' size='340' side='right'caption='[[6yfs]], [[Resolution\|resolution]] 3.50Å' scene=''>		<StructureSection load='6yfs' size='340' side='right'caption='[[6yfs]], [[Resolution\|resolution]] 3.50Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[6yfs]] is a 90 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/Leviviridae_sp. Leviviridae sp.]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6YFS OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://proteopedia.org/fgij/fg.htm?mol=6YFS FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[6yfs]] is a 90 chain structure with sequence from [https://en.wikipedia.org/wiki/Leviviridae_sp. Leviviridae sp.]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6YFS OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=6YFS FirstGlance]. <br>
-	</td></tr><tr id='~~related~~'><td class="sblockLbl"><b>[[~~Related_structure~~\|~~Related~~:]]</b></td><td class="sblockDat">~~<div style='overflow: auto; max~~-~~height: 3em;'>[[6yf7\|6yf7]]~~, [[~~6yf9~~\|6yf9]], [[6yfa\|6yfa]], [[6yfb\|6yfb]], [[6yfc\|6yfc]], [[6yfd\|6yfd]], [[6yfe\|6yfe]], [[6yff\|6yff]], [[6yfg\|6yfg]], [[6yfh\|6yfh]], [[6yfi\|6yfi]], [[6yfj\|6yfj]], [[6yfk\|6yfk]], [[6yfl\|6yfl]], [[6yfm\|6yfm]], [[6yfn\|6yfn]], [[6yfo\|6yfo]], [[6yfp\|6yfp]], [[6yfq\|6yfq]], [[6yfr\|6yfr]], [[6yft\|6yft]], [[6yfu\|6yfu]]~~</div>~~</td></tr>	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 3.498Å</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://proteopedia.org/fgij/fg.htm?mol=6yfs FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6yfs OCA], [~~http~~://pdbe.org/6yfs PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=6yfs RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/6yfs PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=6yfs ProSAT]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=6yfs FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6yfs OCA], [https://pdbe.org/6yfs PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=6yfs RCSB], [https://www.ebi.ac.uk/pdbsum/6yfs PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=6yfs ProSAT]</span></td></tr>
	</table>		</table>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
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	[[Category: Large Structures]]		[[Category: Large Structures]]
	[[Category: Leviviridae sp]]		[[Category: Leviviridae sp]]
-	[[Category: Kalnins, G]]	+	[[Category: Kalnins G]]
-	[[Category: Lieknina, I]]	+	[[Category: Lieknina I]]
-	[[Category: Rumnieks, J]]	+	[[Category: Rumnieks J]]
-	[[Category: Sisovs, M]]	+	[[Category: Sisovs M]]
-	[[Category: Tars, K]]	+	[[Category: Tars K]]
-	~~[[Category: Structural protein]]~~	+
-	~~[[Category: Virus]]~~	+
-	~~[[Category: Virus like particle]]~~	+
-	~~[[Category: Virus-like particle~~]]	+

OCA at 12:56, 16 December 2020

OCA — Wed, 16 Dec 2020 12:56:33 GMT

←Older revision		Revision as of 12:56, 16 December 2020
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	==Virus-like particle of bacteriophage PQ-465==		==Virus-like particle of bacteriophage PQ-465==
-	<StructureSection load='6yfs' size='340' side='right'caption='[[6yfs]]' scene=''>	+	<StructureSection load='6yfs' size='340' side='right'caption='[[6yfs]], [[Resolution\|resolution]] 3.50Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6YFS OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=6YFS FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[6yfs]] is a 90 chain structure with sequence from [http://en.wikipedia.org/wiki/Leviviridae_sp. Leviviridae sp.]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6YFS OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=6YFS FirstGlance]. <br>
-	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=6yfs FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6yfs OCA], [http://pdbe.org/6yfs PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6yfs RCSB], [http://www.ebi.ac.uk/pdbsum/6yfs PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6yfs ProSAT]</span></td></tr>	+	</td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[6yf7\|6yf7]], [[6yf9\|6yf9]], [[6yfa\|6yfa]], [[6yfb\|6yfb]], [[6yfc\|6yfc]], [[6yfd\|6yfd]], [[6yfe\|6yfe]], [[6yff\|6yff]], [[6yfg\|6yfg]], [[6yfh\|6yfh]], [[6yfi\|6yfi]], [[6yfj\|6yfj]], [[6yfk\|6yfk]], [[6yfl\|6yfl]], [[6yfm\|6yfm]], [[6yfn\|6yfn]], [[6yfo\|6yfo]], [[6yfp\|6yfp]], [[6yfq\|6yfq]], [[6yfr\|6yfr]], [[6yft\|6yft]], [[6yfu\|6yfu]]</div></td></tr>
		+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=6yfs FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6yfs OCA], [http://pdbe.org/6yfs PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6yfs RCSB], [http://www.ebi.ac.uk/pdbsum/6yfs PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6yfs ProSAT]</span></td></tr>
	</table>		</table>
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	The single-stranded RNA (ssRNA) bacteriophages are among the simplest known viruses with small genomes and exceptionally high mutation rates. The number of ssRNA phage isolates has remained very low, but recent metagenomic studies have uncovered an immense variety of distinct uncultured ssRNA phages. The coat proteins (CPs) in these genomes are particularly diverse, with notable variation in length and often no recognizable similarity to previously known viruses. We recombinantly expressed metagenome-derived ssRNA phage CPs to produce virus-like particles and determined the three-dimensional structure of 22 previously uncharacterized ssRNA phage capsids covering nine distinct CP types. The structures revealed substantial deviations from the previously known ssRNA phage CP fold, uncovered an unusual prolate particle shape, and revealed a previously unseen dsRNA binding mode. These data expand our knowledge of the evolution of viral structural proteins and are of relevance for applications such as ssRNA phage-based vaccine design.
		+
		+	Three-dimensional structure of 22 uncultured ssRNA bacteriophages: Flexibility of the coat protein fold and variations in particle shapes.,Rumnieks J, Lieknina I, Kalnins G, Sisovs M, Akopjana I, Bogans J, Tars K Sci Adv. 2020 Sep 2;6(36). pii: 6/36/eabc0023. doi: 10.1126/sciadv.abc0023. Print, 2020 Sep. PMID:32917600<ref>PMID:32917600</ref>
		+
		+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
		+	</div>
		+	<div class="pdbe-citations 6yfs" style="background-color:#fffaf0;"></div>
		+	== References ==
		+	<references/>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: Kalnins G]]	+	[[Category: Leviviridae sp]]
-	[[Category: Lieknina I]]	+	[[Category: Kalnins, G]]
-	[[Category: Rumnieks J]]	+	[[Category: Lieknina, I]]
-	[[Category: Sisovs M]]	+	[[Category: Rumnieks, J]]
-	[[Category: Tars K]]	+	[[Category: Sisovs, M]]
		+	[[Category: Tars, K]]
		+	[[Category: Structural protein]]
		+	[[Category: Virus]]
		+	[[Category: Virus like particle]]
		+	[[Category: Virus-like particle]]

OCA at 06:52, 2 September 2020

OCA — Wed, 02 Sep 2020 06:52:52 GMT

←Older revision		Revision as of 06:52, 2 September 2020
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-	'''Unreleased structure'''

-	~~The entry~~ 6yfs ~~is ON HOLD until Paper Publication~~	+	==Virus-like particle of bacteriophage PQ-465==
-		+	<StructureSection load='6yfs' size='340' side='right'caption='[[6yfs]]' scene=''>
-	~~Authors~~: ~~Rumnieks, J~~., ~~Kalnins~~, G., ~~Sisovs, M~~., ~~Lieknina, I~~., ~~Tars, K~~.	+	== Structural highlights ==
-		+	<table><tr><td colspan='2'>Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6YFS OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=6YFS FirstGlance]. <br>
-	~~Description: Virus-like particle of bacteriophage PQ-465~~	+	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=6yfs FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6yfs OCA], [http://pdbe.org/6yfs PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6yfs RCSB], [http://www.ebi.ac.uk/pdbsum/6yfs PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6yfs ProSAT]</span></td></tr>
-	[[Category: ~~Unreleased~~ Structures]]	+	</table>
-	[[Category: ~~Lieknina, I~~]]	+	__TOC__
-	[[Category: ~~Kalnins, G~~]]	+	</StructureSection>
-	[[Category: Rumnieks, J]]	+	[[Category: Large Structures]]
-	[[Category: Sisovs, M]]	+	[[Category: Kalnins G]]
-	[[Category: Tars, K]]	+	[[Category: Lieknina I]]
		+	[[Category: Rumnieks J]]
		+	[[Category: Sisovs M]]
		+	[[Category: Tars K]]

OCA at 07:22, 22 July 2020

OCA — Wed, 22 Jul 2020 07:22:06 GMT

←Older revision		Revision as of 07:22, 22 July 2020
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	'''Unreleased structure'''		'''Unreleased structure'''

-	The entry 6yfs is ON HOLD	+	The entry 6yfs is ON HOLD until Paper Publication

	Authors: Rumnieks, J., Kalnins, G., Sisovs, M., Lieknina, I., Tars, K.		Authors: Rumnieks, J., Kalnins, G., Sisovs, M., Lieknina, I., Tars, K.

OCA: Protected "6yfs" [edit=sysop:move=sysop]

OCA — Wed, 01 Apr 2020 07:48:47 GMT

Protected "6yfs" [edit=sysop:move=sysop]

←Older revision

Revision as of 07:48, 1 April 2020

OCA: New page: '''Unreleased structure''' The entry 6yfs is ON HOLD Authors: Rumnieks, J., Kalnins, G., Sisovs, M., Lieknina, I., Tars, K. Description: Virus-like particle of bacteriophage PQ-465 [[C...

OCA — Wed, 01 Apr 2020 07:48:45 GMT

New page: '''Unreleased structure''' The entry 6yfs is ON HOLD Authors: Rumnieks, J., Kalnins, G., Sisovs, M., Lieknina, I., Tars, K. Description: Virus-like particle of bacteriophage PQ-465 [[C...

New page

'''Unreleased structure'''

The entry 6yfs is ON HOLD

Authors: Rumnieks, J., Kalnins, G., Sisovs, M., Lieknina, I., Tars, K.

Description: Virus-like particle of bacteriophage PQ-465
[[Category: Unreleased Structures]]
[[Category: Lieknina, I]]
[[Category: Kalnins, G]]
[[Category: Rumnieks, J]]
[[Category: Sisovs, M]]
[[Category: Tars, K]]