6yln - Revision history

OCA at 13:29, 24 January 2024

OCA — Wed, 24 Jan 2024 13:29:57 GMT

←Older revision		Revision as of 13:29, 24 January 2024
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	==mTurquoise2 SG P212121 - Directional optical properties of fluorescent proteins==		==mTurquoise2 SG P212121 - Directional optical properties of fluorescent proteins==
-	<StructureSection load='6yln' size='340' side='right'caption='[[6yln]]' scene=''>	+	<StructureSection load='6yln' size='340' side='right'caption='[[6yln]], [[Resolution\|resolution]] 1.85Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6YLN OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://proteopedia.org/fgij/fg.htm?mol=6YLN FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[6yln]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Vaccinia_virus Vaccinia virus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6YLN OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=6YLN FirstGlance]. <br>
-	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://proteopedia.org/fgij/fg.htm?mol=6yln FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6yln OCA], [~~http~~://pdbe.org/6yln PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=6yln RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/6yln PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=6yln ProSAT]</span></td></tr>	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 1.85Å</td></tr>
		+	<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=K:POTASSIUM+ION'>K</scene>, <scene name='pdbligand=SWG:2-[(4Z)-2-[(1R)-1-AMINO-2-HYDROXY-ETHYL]-4-(1H-INDOL-3-YLMETHYLIDENE)-5-OXO-IMIDAZOL-1-YL]ETHANOIC+ACID'>SWG</scene></td></tr>
		+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=6yln FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6yln OCA], [https://pdbe.org/6yln PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=6yln RCSB], [https://www.ebi.ac.uk/pdbsum/6yln PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=6yln ProSAT]</span></td></tr>
	</table>		</table>
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	Fluorescent molecules are like antennas: The rate at which they absorb light depends on their orientation with respect to the incoming light wave, and the apparent intensity of their emission depends on their orientation with respect to the observer. However, the directions along which the most important fluorescent molecules in biology, fluorescent proteins (FPs), absorb and emit light are generally not known. Our optical and X-ray investigations of FP crystals have now allowed us to determine the molecular orientations of the excitation and emission transition dipole moments in the FPs mTurquoise2, eGFP, and mCherry, and the photoconvertible FP mEos4b. Our results will allow using FP directionality in studies of molecular and biological processes, but also in development of novel bioengineering and bioelectronics applications.
		+
		+	Directionality of light absorption and emission in representative fluorescent proteins.,Myskova J, Rybakova O, Brynda J, Khoroshyy P, Bondar A, Lazar J Proc Natl Acad Sci U S A. 2020 Dec 3. pii: 2017379117. doi:, 10.1073/pnas.2017379117. PMID:33273123<ref>PMID:33273123</ref>
		+
		+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
		+	</div>
		+	<div class="pdbe-citations 6yln" style="background-color:#fffaf0;"></div>
		+
		+	==See Also==
		+	*[[Green Fluorescent Protein 3D structures\|Green Fluorescent Protein 3D structures]]
		+	== References ==
		+	<references/>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
	[[Category: Large Structures]]		[[Category: Large Structures]]
		+	[[Category: Vaccinia virus]]
	[[Category: Brynda J]]		[[Category: Brynda J]]
	[[Category: Lazar J]]		[[Category: Lazar J]]
	[[Category: Myskova J]]		[[Category: Myskova J]]
	[[Category: Rybakova O]]		[[Category: Rybakova O]]

OCA at 12:33, 16 December 2020

OCA — Wed, 16 Dec 2020 12:33:13 GMT

←Older revision		Revision as of 12:33, 16 December 2020
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-	'''Unreleased structure'''

-	~~The entry~~ 6yln ~~is ON HOLD until Paper Publication~~	+	==mTurquoise2 SG P212121 - Directional optical properties of fluorescent proteins==
-		+	<StructureSection load='6yln' size='340' side='right'caption='[[6yln]]' scene=''>
-	~~Authors~~: ~~Myskova~~, J., ~~Rybakova~~, O., ~~Brynda, J~~., ~~Lazar, J~~.	+	== Structural highlights ==
-		+	<table><tr><td colspan='2'>Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6YLN OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=6YLN FirstGlance]. <br>
-	~~Description: mTurquoise2 SG P212121 -Directional optical properties of fluorescent proteins~~	+	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=6yln FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6yln OCA], [http://pdbe.org/6yln PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6yln RCSB], [http://www.ebi.ac.uk/pdbsum/6yln PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6yln ProSAT]</span></td></tr>
-	[[Category: ~~Unreleased~~ Structures]]	+	</table>
-	[[Category: ~~Lazar,~~ J]]	+	__TOC__
-	[[Category: ~~Brynda,~~ J]]	+	</StructureSection>
-	[[Category: ~~Rybakova, O~~]]	+	[[Category: Large Structures]]
-	[[Category: ~~Myskova, J~~]]	+	[[Category: Brynda J]]
		+	[[Category: Lazar J]]
		+	[[Category: Myskova J]]
		+	[[Category: Rybakova O]]

OCA at 07:27, 22 July 2020

OCA — Wed, 22 Jul 2020 07:27:37 GMT

←Older revision		Revision as of 07:27, 22 July 2020
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	'''Unreleased structure'''		'''Unreleased structure'''

-	The entry 6yln is ON HOLD	+	The entry 6yln is ON HOLD until Paper Publication

	Authors: Myskova, J., Rybakova, O., Brynda, J., Lazar, J.		Authors: Myskova, J., Rybakova, O., Brynda, J., Lazar, J.

OCA at 04:13, 13 May 2020

OCA — Wed, 13 May 2020 04:13:10 GMT

←Older revision		Revision as of 04:13, 13 May 2020
Line 1:		Line 1:
	'''Unreleased structure'''		'''Unreleased structure'''

-	The entry 6yln is ON HOLD ~~until sometime in the future~~	+	The entry 6yln is ON HOLD

	Authors: Myskova, J., Rybakova, O., Brynda, J., Lazar, J.		Authors: Myskova, J., Rybakova, O., Brynda, J., Lazar, J.

-	Description: ~~mEos4b~~ -Directional optical properties of fluorescent proteins	+	Description: mTurquoise2 SG P212121 -Directional optical properties of fluorescent proteins
	[[Category: Unreleased Structures]]		[[Category: Unreleased Structures]]
-	[[Category: Myskova, J]]
	[[Category: Lazar, J]]		[[Category: Lazar, J]]
	[[Category: Brynda, J]]		[[Category: Brynda, J]]
	[[Category: Rybakova, O]]		[[Category: Rybakova, O]]
		+	[[Category: Myskova, J]]

OCA: Protected "6yln" [edit=sysop:move=sysop]

OCA — Wed, 15 Apr 2020 05:35:57 GMT

Protected "6yln" [edit=sysop:move=sysop]

←Older revision

Revision as of 05:35, 15 April 2020

OCA: New page: '''Unreleased structure''' The entry 6yln is ON HOLD until sometime in the future Authors: Myskova, J., Rybakova, O., Brynda, J., Lazar, J. Description: mEos4b -Directional optical pro...

OCA — Wed, 15 Apr 2020 05:35:55 GMT

New page: '''Unreleased structure''' The entry 6yln is ON HOLD until sometime in the future Authors: Myskova, J., Rybakova, O., Brynda, J., Lazar, J. Description: mEos4b -Directional optical pro...

New page

'''Unreleased structure'''

The entry 6yln is ON HOLD until sometime in the future

Authors: Myskova, J., Rybakova, O., Brynda, J., Lazar, J.

Description: mEos4b -Directional optical properties of fluorescent proteins
[[Category: Unreleased Structures]]
[[Category: Myskova, J]]
[[Category: Lazar, J]]
[[Category: Brynda, J]]
[[Category: Rybakova, O]]