6ypp - Revision history

OCA at 13:32, 24 January 2024

OCA — Wed, 24 Jan 2024 13:32:49 GMT

←Older revision		Revision as of 13:32, 24 January 2024
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-	====	+	==Crystal structure of the cAMP-dependent protein kinase A cocrystallized with PKI (5-24). Soaking of aminofasudil and displacing it with the fragment isoquinoline.==
-	<StructureSection load='6ypp' size='340' side='right'caption='[[6ypp]]' scene=''>	+	<StructureSection load='6ypp' size='340' side='right'caption='[[6ypp]], [[Resolution\|resolution]] 1.75Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id= OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol= FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[6ypp]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Cricetulus_griseus Cricetulus griseus] and [https://en.wikipedia.org/wiki/Mus_musculus Mus musculus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6YPP OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=6YPP FirstGlance]. <br>
-	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=6ypp FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6ypp OCA], [https://pdbe.org/6ypp PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=6ypp RCSB], [https://www.ebi.ac.uk/pdbsum/6ypp PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=6ypp ProSAT]</span></td></tr>	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 1.75Å</td></tr>
		+	<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ISQ:ISOQUINOLINE'>ISQ</scene>, <scene name='pdbligand=SEP:PHOSPHOSERINE'>SEP</scene>, <scene name='pdbligand=TPO:PHOSPHOTHREONINE'>TPO</scene></td></tr>
		+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=6ypp FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6ypp OCA], [https://pdbe.org/6ypp PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=6ypp RCSB], [https://www.ebi.ac.uk/pdbsum/6ypp PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=6ypp ProSAT]</span></td></tr>
	</table>		</table>
		+	== Function ==
		+	[https://www.uniprot.org/uniprot/KAPCA_CRIGR KAPCA_CRIGR] Phosphorylates a large number of substrates in the cytoplasm and the nucleus. Regulates the abundance of compartmentalized pools of its regulatory subunits through phosphorylation of PJA2 which binds and ubiquitinates these subunits, leading to their subsequent proteolysis. Phosphorylates CDC25B, ABL1, NFKB1, CLDN3, PSMC5/RPT6, PJA2, RYR2, RORA and VASP. RORA is activated by phosphorylation. Required for glucose-mediated adipogenic differentiation increase and osteogenic differentiation inhibition from osteoblasts. Involved in the regulation of platelets in response to thrombin and collagen; maintains circulating platelets in a resting state by phosphorylating proteins in numerous platelet inhibitory pathways when in complex with NF-kappa-B (NFKB1 and NFKB2) and I-kappa-B-alpha (NFKBIA), but thrombin and collagen disrupt these complexes and free active PRKACA stimulates platelets and leads to platelet aggregation by phosphorylating VASP. Prevents the antiproliferative and anti-invasive effects of alpha-difluoromethylornithine in breast cancer cells when activated. RYR2 channel activity is potentiated by phosphorylation in presence of luminal Ca(2+), leading to reduced amplitude and increased frequency of store overload-induced Ca(2+) release (SOICR) characterized by an increased rate of Ca(2+) release and propagation velocity of spontaneous Ca(2+) waves, despite reduced wave amplitude and resting cytosolic Ca(2+). PSMC5/RPT6 activation by phosphorylation stimulates proteasome. Negatively regulates tight junctions (TJs) in ovarian cancer cells via CLDN3 phosphorylation. NFKB1 phosphorylation promotes NF-kappa-B p50-p50 DNA binding. Involved in embryonic development by down-regulating the Hedgehog (Hh) signaling pathway that determines embryo pattern formation and morphogenesis. Prevents meiosis resumption in prophase-arrested oocytes via CDC25B inactivation by phosphorylation. May also regulate rapid eye movement (REM) sleep in the pedunculopontine tegmental (PPT) (By similarity). Phosphorylates APOBEC3G and AICDA (By similarity).
		+
		+	==See Also==
		+	*[[CAMP-dependent protein kinase 3D structures\|CAMP-dependent protein kinase 3D structures]]
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
		+	[[Category: Cricetulus griseus]]
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: Z-~~disk~~]]	+	[[Category: Mus musculus]]
		+	[[Category: Gerber H-D]]
		+	[[Category: Heine A]]
		+	[[Category: Klebe G]]
		+	[[Category: Oebbeke M]]

OCA at 05:18, 28 April 2021

OCA — Wed, 28 Apr 2021 05:18:08 GMT

←Older revision		Revision as of 05:18, 28 April 2021
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-	'''Unreleased structure'''

-	~~The entry~~ 6ypp ~~is ON HOLD until Paper Publication~~	+	====
-		+	<StructureSection load='6ypp' size='340' side='right'caption='[[6ypp]]' scene=''>
-	~~Authors~~: ~~Oebbeke, M~~.~~, Gerber, H~~.-D.~~, Heine, A~~.~~, Klebe, G~~.	+	== Structural highlights ==
-		+	<table><tr><td colspan='2'>Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id= OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol= FirstGlance]. <br>
-	~~Description~~: ~~Crystal structure of the cAMP-dependent protein kinase A cocrystallized with PKI (5-24)~~. ~~Soaking of aminofasudil and displacing it with the fragment isoquinoline~~.	+	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=6ypp FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6ypp OCA], [https://pdbe.org/6ypp PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=6ypp RCSB], [https://www.ebi.ac.uk/pdbsum/6ypp PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=6ypp ProSAT]</span></td></tr>
-	[~~[Category~~: ~~Unreleased Structures~~]]	+	</table>
-	[~~[Category~~: ~~Gerber~~, H.-D]]	+	__TOC__
-	[~~[Category~~: ~~Klebe~~, G]]	+	</StructureSection>
-	[[Category: ~~Heine, A~~]]	+	[[Category: Large Structures]]
-	[[Category: ~~Oebbeke, M~~]]	+	[[Category: Z-disk]]

OCA at 05:24, 29 April 2020

OCA — Wed, 29 Apr 2020 05:24:10 GMT

←Older revision		Revision as of 05:24, 29 April 2020
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	'''Unreleased structure'''		'''Unreleased structure'''

-	The entry 6ypp is ON HOLD	+	The entry 6ypp is ON HOLD until Paper Publication

	Authors: Oebbeke, M., Gerber, H.-D., Heine, A., Klebe, G.		Authors: Oebbeke, M., Gerber, H.-D., Heine, A., Klebe, G.

OCA: Protected "6ypp" [edit=sysop:move=sysop]

OCA — Wed, 22 Apr 2020 04:31:52 GMT

Protected "6ypp" [edit=sysop:move=sysop]

←Older revision

Revision as of 04:31, 22 April 2020

OCA: New page: '''Unreleased structure''' The entry 6ypp is ON HOLD Authors: Oebbeke, M., Gerber, H.-D., Heine, A., Klebe, G. Description: Crystal structure of the cAMP-dependent protein kinase A coc...

OCA — Wed, 22 Apr 2020 04:31:50 GMT

New page: '''Unreleased structure''' The entry 6ypp is ON HOLD Authors: Oebbeke, M., Gerber, H.-D., Heine, A., Klebe, G. Description: Crystal structure of the cAMP-dependent protein kinase A coc...

New page

'''Unreleased structure'''

The entry 6ypp is ON HOLD

Authors: Oebbeke, M., Gerber, H.-D., Heine, A., Klebe, G.

Description: Crystal structure of the cAMP-dependent protein kinase A cocrystallized with PKI (5-24). Soaking of aminofasudil and displacing it with the fragment isoquinoline.
[[Category: Unreleased Structures]]
[[Category: Gerber, H.-D]]
[[Category: Klebe, G]]
[[Category: Heine, A]]
[[Category: Oebbeke, M]]