6yz7 - Revision history

OCA at 13:38, 24 January 2024

OCA — Wed, 24 Jan 2024 13:38:41 GMT

←Older revision		Revision as of 13:38, 24 January 2024
Line 3:		Line 3:
	<StructureSection load='6yz7' size='340' side='right'caption='[[6yz7]], [[Resolution\|resolution]] 3.30Å' scene=''>		<StructureSection load='6yz7' size='340' side='right'caption='[[6yz7]], [[Resolution\|resolution]] 3.30Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[6yz7]] is a 8 chain structure with sequence from [https://en.wikipedia.org/wiki/~~2019-ncov 2019-ncov~~], [https://en.wikipedia.org/wiki/~~Camelus_glama Camelus~~ glama] and [https://en.wikipedia.org/wiki/~~Human Human~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6YZ7 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=6YZ7 FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[6yz7]] is a 8 chain structure with sequence from [https://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens], [https://en.wikipedia.org/wiki/Lama_glama Lama glama] and [https://en.wikipedia.org/wiki/Severe_acute_respiratory_syndrome_coronavirus_2 Severe acute respiratory syndrome coronavirus 2]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6YZ7 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=6YZ7 FirstGlance]. <br>
-	</td></tr><tr id='~~ligand~~'><td class="sblockLbl"><b>[[~~Ligand~~\|~~Ligands~~:]]</b></td><td class="sblockDat" id="~~ligandDat~~">~~<scene name='pdbligand=NAG:N~~-~~ACETYL-D-GLUCOSAMINE'>NAG</scene>~~</td></tr>	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 3.3Å</td></tr>
-	<tr id='~~gene~~'><td class="sblockLbl"><b>[[~~Gene~~\|~~Gene~~:]]</b></td><td class="sblockDat">~~S, 2 ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode~~=~~Info&srchmode~~=~~5&id=2697049 2019~~-~~nCoV])~~</td></tr>	+	<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=NAG:N-ACETYL-D-GLUCOSAMINE'>NAG</scene></td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=6yz7 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6yz7 OCA], [https://pdbe.org/6yz7 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=6yz7 RCSB], [https://www.ebi.ac.uk/pdbsum/6yz7 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=6yz7 ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=6yz7 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6yz7 OCA], [https://pdbe.org/6yz7 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=6yz7 RCSB], [https://www.ebi.ac.uk/pdbsum/6yz7 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=6yz7 ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
-	[[https://www.uniprot.org/uniprot/SPIKE_SARS2 SPIKE_SARS2]] attaches the virion to the cell membrane by interacting with host receptor, initiating the infection (By similarity). Binding to human ACE2 receptor and internalization of the virus into the endosomes of the host cell induces conformational changes in the Spike glycoprotein (PubMed:32142651, PubMed:32075877, PubMed:32155444). Uses also human TMPRSS2 for priming in human lung cells which is an essential step for viral entry (PubMed:32142651). Proteolysis by cathepsin CTSL may unmask the fusion peptide of S2 and activate membranes fusion within endosomes.[HAMAP-Rule:MF_04099]<ref>PMID:32075877</ref> <ref>PMID:32142651</ref> <ref>PMID:32155444</ref> mediates fusion of the virion and cellular membranes by acting as a class I viral fusion protein. Under the current model, the protein has at least three conformational states: pre-fusion native state, pre-hairpin intermediate state, and post-fusion hairpin state. During viral and target cell membrane fusion, the coiled coil regions (heptad repeats) assume a trimer-of-hairpins structure, positioning the fusion peptide in close proximity to the C-terminal region of the ectodomain. The formation of this structure appears to drive apposition and subsequent fusion of viral and target cell membranes.[HAMAP-Rule:MF_04099] Acts as a viral fusion peptide which is unmasked following S2 cleavage occurring upon virus endocytosis.[HAMAP-Rule:MF_04099]	+	[https://www.uniprot.org/uniprot/SPIKE_SARS2 SPIKE_SARS2] attaches the virion to the cell membrane by interacting with host receptor, initiating the infection (By similarity). Binding to human ACE2 receptor and internalization of the virus into the endosomes of the host cell induces conformational changes in the Spike glycoprotein (PubMed:32142651, PubMed:32075877, PubMed:32155444). Uses also human TMPRSS2 for priming in human lung cells which is an essential step for viral entry (PubMed:32142651). Proteolysis by cathepsin CTSL may unmask the fusion peptide of S2 and activate membranes fusion within endosomes.[HAMAP-Rule:MF_04099]<ref>PMID:32075877</ref> <ref>PMID:32142651</ref> <ref>PMID:32155444</ref> mediates fusion of the virion and cellular membranes by acting as a class I viral fusion protein. Under the current model, the protein has at least three conformational states: pre-fusion native state, pre-hairpin intermediate state, and post-fusion hairpin state. During viral and target cell membrane fusion, the coiled coil regions (heptad repeats) assume a trimer-of-hairpins structure, positioning the fusion peptide in close proximity to the C-terminal region of the ectodomain. The formation of this structure appears to drive apposition and subsequent fusion of viral and target cell membranes.[HAMAP-Rule:MF_04099] Acts as a viral fusion peptide which is unmasked following S2 cleavage occurring upon virus endocytosis.[HAMAP-Rule:MF_04099]

	==See Also==		==See Also==
Line 17:		Line 17:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: ~~2019-ncov~~]]	+	[[Category: Homo sapiens]]
-	[[Category: ~~Camelus~~ glama]]	+	[[Category: Lama glama]]
-	~~[[Category: Human~~]]	+
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: Naismith~~, J H~~]]	+	[[Category: Severe acute respiratory syndrome coronavirus 2]]
-	[[Category: Ren, J]]	+	[[Category: Naismith JH]]
-	[[Category: Stuart~~, D I~~]]	+	[[Category: Ren J]]
-	[[Category: Zhao, Y]]	+	[[Category: Stuart DI]]
-	[[Category: Zhou, D]]	+	[[Category: Zhao Y]]
-	~~[[Category: Antibody]]~~	+	[[Category: Zhou D]]
-	~~[[Category: Nanobody complex]]~~	+
-	~~[[Category: Rbd]]~~	+
-	~~[[Category: Viral protein~~]]	+

OCA at 15:22, 8 June 2021

OCA — Tue, 08 Jun 2021 15:22:51 GMT

←Older revision		Revision as of 15:22, 8 June 2021
Line 1:		Line 1:

-	==~~n/a~~==	+	==H11-D4, SARS-CoV-2 RBD, CR3022 ternary complex==
-	<StructureSection load='6yz7' size='340' side='right'caption='[[6yz7]]' scene=''>	+	<StructureSection load='6yz7' size='340' side='right'caption='[[6yz7]], [[Resolution\|resolution]] 3.30Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6YZ7 OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://proteopedia.org/fgij/fg.htm?mol=6YZ7 FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[6yz7]] is a 8 chain structure with sequence from [https://en.wikipedia.org/wiki/2019-ncov 2019-ncov], [https://en.wikipedia.org/wiki/Camelus_glama Camelus glama] and [https://en.wikipedia.org/wiki/Human Human]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6YZ7 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=6YZ7 FirstGlance]. <br>
-	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://proteopedia.org/fgij/fg.htm?mol=6yz7 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6yz7 OCA], [~~http~~://pdbe.org/6yz7 PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=6yz7 RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/6yz7 PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=6yz7 ProSAT]</span></td></tr>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=NAG:N-ACETYL-D-GLUCOSAMINE'>NAG</scene></td></tr>
		+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">S, 2 ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=2697049 2019-nCoV])</td></tr>
		+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=6yz7 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6yz7 OCA], [https://pdbe.org/6yz7 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=6yz7 RCSB], [https://www.ebi.ac.uk/pdbsum/6yz7 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=6yz7 ProSAT]</span></td></tr>
	</table>		</table>
		+	== Function ==
		+	[[https://www.uniprot.org/uniprot/SPIKE_SARS2 SPIKE_SARS2]] attaches the virion to the cell membrane by interacting with host receptor, initiating the infection (By similarity). Binding to human ACE2 receptor and internalization of the virus into the endosomes of the host cell induces conformational changes in the Spike glycoprotein (PubMed:32142651, PubMed:32075877, PubMed:32155444). Uses also human TMPRSS2 for priming in human lung cells which is an essential step for viral entry (PubMed:32142651). Proteolysis by cathepsin CTSL may unmask the fusion peptide of S2 and activate membranes fusion within endosomes.[HAMAP-Rule:MF_04099]<ref>PMID:32075877</ref> <ref>PMID:32142651</ref> <ref>PMID:32155444</ref> mediates fusion of the virion and cellular membranes by acting as a class I viral fusion protein. Under the current model, the protein has at least three conformational states: pre-fusion native state, pre-hairpin intermediate state, and post-fusion hairpin state. During viral and target cell membrane fusion, the coiled coil regions (heptad repeats) assume a trimer-of-hairpins structure, positioning the fusion peptide in close proximity to the C-terminal region of the ectodomain. The formation of this structure appears to drive apposition and subsequent fusion of viral and target cell membranes.[HAMAP-Rule:MF_04099] Acts as a viral fusion peptide which is unmasked following S2 cleavage occurring upon virus endocytosis.[HAMAP-Rule:MF_04099]
		+
		+	==See Also==
		+	*[[Antibody 3D structures\|Antibody 3D structures]]
		+	== References ==
		+	<references/>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
		+	[[Category: 2019-ncov]]
		+	[[Category: Camelus glama]]
		+	[[Category: Human]]
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: ~~N/a~~]]	+	[[Category: Naismith, J H]]
		+	[[Category: Ren, J]]
		+	[[Category: Stuart, D I]]
		+	[[Category: Zhao, Y]]
		+	[[Category: Zhou, D]]
		+	[[Category: Antibody]]
		+	[[Category: Nanobody complex]]
		+	[[Category: Rbd]]
		+	[[Category: Viral protein]]

OCA at 06:30, 3 June 2020

OCA — Wed, 03 Jun 2020 06:30:01 GMT

←Older revision		Revision as of 06:30, 3 June 2020
Line 1:		Line 1:
-	'''Unreleased structure'''

-	~~The entry~~ 6yz7 ~~is ON HOLD~~	+	==n/a==
-		+	<StructureSection load='6yz7' size='340' side='right'caption='[[6yz7]]' scene=''>
-	~~Authors~~:	+	== Structural highlights ==
-		+	<table><tr><td colspan='2'>Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6YZ7 OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=6YZ7 FirstGlance]. <br>
-	~~Description~~:	+	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=6yz7 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6yz7 OCA], [http://pdbe.org/6yz7 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6yz7 RCSB], [http://www.ebi.ac.uk/pdbsum/6yz7 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6yz7 ProSAT]</span></td></tr>
-	[[Category: ~~Unreleased~~ Structures]]	+	</table>
		+	__TOC__
		+	</StructureSection>
		+	[[Category: Large Structures]]
		+	[[Category: N/a]]

OCA: Protected "6yz7" [edit=sysop:move=sysop]

OCA — Wed, 13 May 2020 04:18:45 GMT

Protected "6yz7" [edit=sysop:move=sysop]

←Older revision

Revision as of 04:18, 13 May 2020

OCA: New page: '''Unreleased structure''' The entry 6yz7 is ON HOLD Authors: Description: Category: Unreleased Structures

OCA — Wed, 13 May 2020 04:18:44 GMT

New page: '''Unreleased structure''' The entry 6yz7 is ON HOLD Authors: Description: Category: Unreleased Structures

New page

'''Unreleased structure'''

The entry 6yz7 is ON HOLD

Authors:

Description:
[[Category: Unreleased Structures]]